Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_03G0383600 | OGI:03062660 | 1/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr03:24228571-24229215 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGGTGGGTATCAAGCCCATTTCCCTCGATGCACTGTCTATCACATTACGTGGTAGCCCCTTGGTAAACTGATCTGCCAGATTTCTAGCCGTTTGGACATAGTCCAATGCTATCACTCCGGAATTTTTCTGCTTTCTGACAGATTTCAGTCTTCTCTTGATGTGTCTAGATGACTTCATGTTGTCCTTTGAACTGTTCACTTTAATAATCACTGTTTGATTATCGCAGTTCATTAGGATAGCTGGCACTAGTTTTTCAACCACCGGCAAATCCATCAGGAGTTCACGAAGCCACTCGGCCTCAACTGTCGCAGTATCTAGTGCTGTAAGTTCTGCTTCCATTGTTGACCTCGTTAAGATGGTCTGCTTGCAAGACTTCCAGGAAACAGCGCCACCTCCAAGTGTGAACACATATCCACTTGTGGCTTTTATCTCATCAACATCAGATATCCAGTTTGAGTCACTATACCCTTCTAGTACTTTTGGATACCCGGTATAGTGAATTCCATAGCTCATAGTGCCCTTTGGATAGCGTATTACTCTTTCCAGAGCCTGCCAATGATCATCTCCTGGATTTGAGACAAACTGGCTCAGCTTGCTTACAACAAATGAGATGTCAGGACTCGTTGCACTAGCCAAGTACAT
More
|
||||||||||
| CDS seq | ATGTACTTGGCTAGTGCAACGAGTCCTGACATCTCATTTGTTGTAAGCAAGCTGAGCCAGTTTGTCTCAAATCCAGGAGATGATCATTGGCAGGCTCTGGAAAGAGTAATACGCTATCCAAAGGGCACTATGAGCTATGGAATTCACTATACCGGGTATCCAAAAGTACTAGAAGGGTATAGTGACTCAAACTGGATATCTGATGTTGATGAGATAAAAGCCACAAGTGGATATGTGTTCACACTTGGAGGTGGCGCTGTTTCCTGGAAGTCTTGCAAGCAGACCATCTTAACGAGGTCAACAATGGAAGCAGAACTTACAGCACTAGATACTGCGACAGTTGAGGCCGAGTGGCTTCGTGAACTCCTGATGGATTTGCCGGTGGTTGAAAAACTAGTGCCAGCTATCCTAATGAACTGCGATAATCAAACAGTGATTATTAAAGTGAACAGTTCAAAGGACAACATGAAGTCATCTAGACACATCAAGAGAAGACTGAAATCTGTCAGAAAGCAGAAAAATTCCGGAGTGATAGCATTGGACTATGTCCAAACGGCTAGAAATCTGGCAGATCAGTTTACCAAGGGGCTACCACGTAATGTGATAGACAGTGCATCGAGGGAAATGGGCTTGATACCCACCTAA
More
|
||||||||||
| Protein seq | MYLASATSPDISFVVSKLSQFVSNPGDDHWQALERVIRYPKGTMSYGIHYTGYPKVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKLVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDSASREMGLIPT |
||||||||||
| Function | Retrovirus-related Pol polyprotein from transposon RE2 [UniProtKB/Swiss-Prot:Q9ZT94] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_03G0383600 | OsZS97_03T0383600.1 | Chr03 | 24228571 | 24229215 | - | makerRMon | ||
| CDS seq | ATGTACTTGGCTAGTGCAACGAGTCCTGACATCTCATTTGTTGTAAGCAAGCTGAGCCAGTTTGTCTCAAATCCAGGAGATGATCATTGGCAGGCTCTGGAAAGAGTAATACGCTATCCAAAGGGCACTATGAGCTATGGAATTCACTATACCGGGTATCCAAAAGTACTAGAAGGGTATAGTGACTCAAACTGGATATCTGATGTTGATGAGATAAAAGCCACAAGTGGATATGTGTTCACACTTGGAGGTGGCGCTGTTTCCTGGAAGTCTTGCAAGCAGACCATCTTAACGAGGTCAACAATGGAAGCAGAACTTACAGCACTAGATACTGCGACAGTTGAGGCCGAGTGGCTTCGTGAACTCCTGATGGATTTGCCGGTGGTTGAAAAACTAGTGCCAGCTATCCTAATGAACTGCGATAATCAAACAGTGATTATTAAAGTGAACAGTTCAAAGGACAACATGAAGTCATCTAGACACATCAAGAGAAGACTGAAATCTGTCAGAAAGCAGAAAAATTCCGGAGTGATAGCATTGGACTATGTCCAAACGGCTAGAAATCTGGCAGATCAGTTTACCAAGGGGCTACCACGTAATGTGATAGACAGTGCATCGAGGGAAATGGGCTTGATACCCACCTAA
More
|
|||||||
| Protein seq | MYLASATSPDISFVVSKLSQFVSNPGDDHWQALERVIRYPKGTMSYGIHYTGYPKVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKLVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDSASREMGLIPT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.011697 | 0.003942 | 0.0252775 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0442550 | SBH | 0.012027 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g37650 | SBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0442550 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0397500 | SBH | 0.022325 | 0.099749 | 0.0163495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0045300 | SBH | 0.1419535 | 0.0767665 | 0.0096775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
