Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_03G0341900 | OGI:03055600 | 15/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr03:21819882-21822852 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACATATTCTTCTTGAGGTGCAGCTGCGGACGGTGATCTCGGATGCAGGCCAGCACATGTCCTCTAGCGTAGCGGCTCGCTCGACGACACTCCTGCTTCAGGACATCGTCGATGCGCTGGCCAATCCCTTCGAGCTGTGCGCAGGCCCCATTCAACCACGAGATATAACCAGCCGCCGACTCCTCGGGATCTCCGCAGGGAACTCGGAGCTCCTTGCAAACCCTCGCCATCGCCGTGCAGCAGCTCTTGAGGTACGAGTTGAACCACACCTCGCGACCCCGGAGAGCTTCCACGGCCTGGTCCTTCTTCACCTCCACCATGGTTTTTTCGAGTTTGGCCACCTCGAGTTTCGTCTTCCAATATCGGATTCGACGATCTTAGTCAGCCAACATGTTCTCAAAATCTACCCGACACGGAAAAGACTAAGTCAAGCTATTCTTCTCTTCCGAGAACATAGCTAATTAAGTCAAACGGAACACAAGGAGTGAAGGAGAGCAAGATACAAACCTAATGACGTCATCGCCACGCTCGCCTCCGCAGACGGGCTTTGACTAGTTTCCTCCCGCAGCACGAACGGCTCGAGTGTGAGCGCCGGAACGATCACCGGCATATCGGGCTGCCCGCGCTGCTGGACGTCCTCGACATCAACATATCTACAACAACAACAAAGTACTCAGAATCACATGCTAAGGAAACAAGGGAGACAGCTATTCAGATAAGAGCAATTCGGATCCACAGAAAAGTTTTTCAGCATGAAGGCTAAGGGGTGCAAGGGAAAACAAATATCCTACTGTTCAAAAAGGGGGAGGACGTACTCACCCAAGTCACCGACTTCTTCCATCATAGCCTTGCGCGCGTCATCGGCGGCCCCCTGATACAAAGCCTTCTTAAGGTCCAGATCGGGATATGCCAGCCTCATGCACGCAAGGACATGGCACGCCCCGGTGTAGATGCCGTTGGACGTCTCCTCGCCGATCCTGGCCGCGTGATTGGAGGGGATCTCCTCCATCGCCGTAGCCAATTCCGCAAGCGACGACGTCAGCGAGAACTCATCGGGGTGCGCCGGGATGGTAGTCGTGACACCACACTCCCCGACGAGTTGGTGCAGGCTGGTGAACGATGTTCGCAGCGAACCACGGATGTCAATCATGTGACCCTCGAGCTCCGACATCCGGTGCTTGAGTCCGCGCCGTTGCATCTCGTTGCCGGCCACCAGCTCCCTCATCTTTAGGAGGTCCTCGCGGGCCTCCGCTAGGTTGCGCGCCAGCTGGTCGGCACGCTGGTTTGCCGACAACGCTGCCGCCCTGGCCTCTTCGATCTCGCGACCTACGCCATGAGCACCGGCCTGGAGGATGCGCTCCATCTCCGCTTGGACCTCTCCCCAGGTGAGGGCATCGGTGGACGGGCCCCGGGTAGGCACGGGGCTAACGGCAGGGCCACTCGGTGCTGCCTCCTGGTCCTTAGCAGCGAATAAGACTCCCGACGAGGTCGCTGCAGGGGACGCGCTGGATGTGGCATCAGCCCCACCTTGCGCCACCTTTTCCCGCGCCACCCTGCAAAGATTTTCCTCTTCCCCATGAGGCGAGGTGATCAGAACTTTGAAAATGAAAAGACATCAAGAACGTTTACTTACTTCTCGCCGATCGTCACCAACCTTTGCCTTCGCTGAGGCGGAGGAGACGTGTCCGAGTCCTGAGTAGGATGAAATGGTGTGAGGAGAAGTTCTTCCGACTACGCGCTAAAAAACGAGAGAGAAGCTTACCGCGGAGGTCGGCGCTTTCCGACGGGTCCCGAGTACGGAGGAGAATTTCCTTCCCCTCTTTGGGACGTTGCTACCACCCGTGGTGGCAGCAACAACGTTAGATGGCTCCTTGGCAACGCTCTCTTTCAACGACGCTGCCGCCTGGTGGTCCATGAGCGGCCCGATGACGTCCGTCAGAGGGAGGTCCTGCATAACGTGAAGTCACGGCGCAATCTAGACAAGGAAGATATAAAGGTATTATCGACTACACTTACATTAATCACGGCGGCGCGCTCAGTCACATCCTTATCACAGAGTGCGATGGGGATATCGCCCGCCTTCGAGGGCACGCTGATCATTATCTGACCAACGCGGCGTCCCACGGTGTCACTGTCTAGACCTGTAAATCGAGAATAAGAACTCGATACGTCAGGAGAAACAGATGCGCTCAGAACAAAAATAGAAAAGCGAGAAAAAATACCCCGAGGAGAGACCCTGGTCGTGTCCTCTGGCCCAGAGTAATCAAAGGCCGGATGGGCGTGGCTTTTTTTTCTCTTCACTCGAACCAATCCACCCAGCCGACTTCTTGTGTTTTTTGTGAGTTGTGTATCCACTCCAATAATACTATTGTCAAGTACCTTTAGGGATGAGGATCTCGGCAAGATATGCAGTTCTTGGAGAATGAAAAAAAACTGATCTACTTCTTTTTGGTATTTTAGACTAAATTCTTTTGTTCCTCGATGCTCAATCAAAACCCCCTTTTTTAAGACGGAATCTTCCTCCGGGTTCCCATATTCGTTCTCTGAGTCTTCCTTTGAGTCTTCCTCTAAAGTGCCATATTTATCCTCTCGGGGCCTATATTTGTTCTCTGGACTCCCATATTCGTCCTCGGATTCCTCCTCTCGAGTCCTATATTCGTCCTTTAGGATTCCATATTCATCTTCTAGGGTTTCATATTCGTTCTCTGGGATCCCATATTCATCTTCTAGGGTTTCATACTCCTCCTCTCGAGTCCTATATTCGTCTTCTAGGGTTTTACATTCTTCCTCTCTGGTCCTATATTCGTTTTCTGGGCTCCCGTATTCGTTCTCTGAGTCTTTCTCTCGAGTCCTATATTCGTCCTCTAGGGTCCTATATCTAAATTTAACAATTCCTGAACCATTTTTATCTTTTTTGTATCGTGGGTCATCAAAATAAGCAACTATAGTATTTCTACGTAAAACACCCAT
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| CDS seq | ATGGGTGTTTTACGTAGAAATACTATAGTTGCTTATTTTGATGACCCACGATACAAAAAAGATAAAAATGGTTCAGGAATTGTTAAATTTAGATATAGGACCCTAGAGGACGAATATAGGACTCGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGAATATAGGACCAGAGAGGAAGAATGTAAAACCCTAGAAGACGAATATAGGACTCGAGAGGAGGAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAACGAATATGAAACCCTAGAAGATGAATATGGAATCCTAAAGGACGAATATAGGACTCGAGAGGAGGAATCCGAGGACGAATATGGGAGTCCAGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAAGACTCAAAGGAAGACTCAGAGAACGAATATGGGAACCCGGAGGAAGATTCCGTCTTAAAAAAGGGGGTTTTGATTGAGCATCGAGGAACAAAAGAATTTAGTCTAAAATACCAAAAAGAAGTAGATCAGTTTTTTTTCATTCTCCAAGAACTGCATATCTTGCCGAGATCCTCATCCCTAAAGGTACTTGACAATAGTATTATTGGAGTGGATACACAACTCACAAAAAACACAAGAAGTCGGCTGGGTGGATTGGTTCGAGTGAAGAGAAAAAAAAGCCACGCCCATCCGGCCTTTGATTACTCTGGGCCAGAGGACACGACCAGGGTCTCTCCTCGGGGTATTTTTTCTCGCTTTTCTATTTTTGTTCTGAGCGCATCTGTTTCTCCTGACGTATCGAGTTCTTATTCTCGATTTACAGGTCTAGACAGTGACACCGTGGGACGCCGCGTTGGTCAGATAATGATCAGCGTGCCCTCGAAGGCGGGCGATATCCCCATCGCACTCTGTGATAAGGATGTGACTGAGCGCGCCGCCGTGATTAATGACCTCCCTCTGACGGACGTCATCGGGCCGCTCATGGACCACCAGGCGGCAGCGTCGTTGAAAGAGAGCGTTGCCAAGGAGCCATCTAACGTTGTTGCTGCCACCACGGGTGGTAGCAACGTCCCAAAGAGGGGAAGGAAATTCTCCTCCGTACTCGGGACCCGTCGGAAAGCGCCGACCTCCGCGGACTCGGACACGTCTCCTCCGCCTCAGCGAAGGCAAAGGTTGGTGACGATCGGCGAGAAGGTGGCGCGGGAAAAGGTGGCGCAAGGTGGGGCTGATGCCACATCCAGCGCGTCCCCTGCAGCGACCTCGTCGGGAGTCTTATTCGCTGCTAAGGACCAGGAGGCAGCACCGAGTGGCCCTGCCGTTAGCCCCGTGCCTACCCGGGGCCCGTCCACCGATGCCCTCACCTGGGGAGAGGTCCAAGCGGAGATGGAGCGCATCCTCCAGGCCGGTGCTCATGGCGTAGGTCGCGAGATCGAAGAGGCCAGGGCGGCAGCGTTGTCGGCAAACCAGCGTGCCGACCAGCTGGCGCGCAACCTAGCGGAGGCCCGCGAGGACCTCCTAAAGATGAGGGAGCTGGTGGCCGGCAACGAGATGCAACGGCGCGGACTCAAGCACCGGATGTCGGAGCTCGAGGGTCACATGATTGACATCCGTGGTTCGCTGCGAACATCGTTCACCAGCCTGCACCAACTCGTCGGGGAGTGTGGTGTCACGACTACCATCCCGGCGCACCCCGATGAGTTCTCGCTGACGTCGTCGCTTGCGGAATTGGCTACGGCGATGGAGGAGATCCCCTCCAATCACGCGGCCAGGATCGGCGAGGAGACGTCCAACGGCATCTACACCGGGGCGTGCCATGTCCTTGCGTGCATGAGGCTGGCATATCCCGATCTGGACCTTAAGAAGGCTTTGTATCAGGGGGCCGCCGATGACGCGCGCAAGGCTATGATGGAAGAAGTCGGTGACTTGGGTGAATATGTTGATGTCGAGGACGTCCAGCAGCGCGGGCAGCCCGATATGCCGGTGATCGTTCCGGCGCTCACACTCGAGCCGTTCGTGCTGCGGGAGGAAACTAGTCAAAGCCCGTCTGCGGAGGCGAGCGTGGCGATGACGTCATTAGATCGTCGAATCCGATATTGGAAGACGAAACTCGAGGTGGCCAAACTCGAAAAAACCATGGTGGAGGTGAAGAAGGACCAGGCCGTGGAAGCTCTCCGGGGTCGCGAGGTGTGGTTCAACTCGTACCTCAAGAGCTGCTGCACGGCGATGGCGAGGGTTTGCAAGGAGCTCCGAGTTCCCTGCGGAGATCCCGAGGAGTCGGCGGCTGGTTATATCTCGTGGTTGAATGGGGCCTGCGCACAGCTCGAAGGGATTGGCCAGCGCATCGACGATGTCCTGAAGCAGGAGTGTCGTCGAGCGAGCCGCTACGCTAGAGGACATGTGCTGGCCTGCATCCGAGATCACCGTCCGCAGCTGCACCTCAAGAAGAATATGTGA
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| Protein seq | MGVLRRNTIVAYFDDPRYKKDKNGSGIVKFRYRTLEDEYRTREKDSENEYGSPENEYRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILKDEYRTREEESEDEYGSPENKYRPREDKYGTLEEDSKEDSENEYGNPEEDSVLKKGVLIEHRGTKEFSLKYQKEVDQFFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHAHPAFDYSGPEDTTRVSPRGIFSRFSIFVLSASVSPDVSSSYSRFTGLDSDTVGRRVGQIMISVPSKAGDIPIALCDKDVTERAAVINDLPLTDVIGPLMDHQAAASLKESVAKEPSNVVAATTGGSNVPKRGRKFSSVLGTRRKAPTSADSDTSPPPQRRQRLVTIGEKVAREKVAQGGADATSSASPAATSSGVLFAAKDQEAAPSGPAVSPVPTRGPSTDALTWGEVQAEMERILQAGAHGVGREIEEARAAALSANQRADQLARNLAEAREDLLKMRELVAGNEMQRRGLKHRMSELEGHMIDIRGSLRTSFTSLHQLVGECGVTTTIPAHPDEFSLTSSLAELATAMEEIPSNHAARIGEETSNGIYTGACHVLACMRLAYPDLDLKKALYQGAADDARKAMMEEVGDLGEYVDVEDVQQRGQPDMPVIVPALTLEPFVLREETSQSPSAEASVAMTSLDRRIRYWKTKLEVAKLEKTMVEVKKDQAVEALRGREVWFNSYLKSCCTAMARVCKELRVPCGDPEESAAGYISWLNGACAQLEGIGQRIDDVLKQECRRASRYARGHVLACIRDHRPQLHLKKNM |
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| Function | DNA-directed RNA polymerase subunit beta'' [UniProtKB/Swiss-Prot:P0C509] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_03G0341900 | OsZS97_03T0341900.1 | Chr03 | 21819882 | 21822852 | - | makerRMon | ||
| CDS seq | ATGGGTGTTTTACGTAGAAATACTATAGTTGCTTATTTTGATGACCCACGATACAAAAAAGATAAAAATGGTTCAGGAATTGTTAAATTTAGATATAGGACCCTAGAGGACGAATATAGGACTCGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGAATATAGGACCAGAGAGGAAGAATGTAAAACCCTAGAAGACGAATATAGGACTCGAGAGGAGGAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAACGAATATGAAACCCTAGAAGATGAATATGGAATCCTAAAGGACGAATATAGGACTCGAGAGGAGGAATCCGAGGACGAATATGGGAGTCCAGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAAGACTCAAAGGAAGACTCAGAGAACGAATATGGGAACCCGGAGGAAGATTCCGTCTTAAAAAAGGGGGTTTTGATTGAGCATCGAGGAACAAAAGAATTTAGTCTAAAATACCAAAAAGAAGTAGATCAGTTTTTTTTCATTCTCCAAGAACTGCATATCTTGCCGAGATCCTCATCCCTAAAGGTACTTGACAATAGTATTATTGGAGTGGATACACAACTCACAAAAAACACAAGAAGTCGGCTGGGTGGATTGGTTCGAGTGAAGAGAAAAAAAAGCCACGCCCATCCGGCCTTTGATTACTCTGGGCCAGAGGACACGACCAGGGTCTCTCCTCGGGGTATTTTTTCTCGCTTTTCTATTTTTGTTCTGAGCGCATCTGTTTCTCCTGACGTATCGAGTTCTTATTCTCGATTTACAGGTCTAGACAGTGACACCGTGGGACGCCGCGTTGGTCAGATAATGATCAGCGTGCCCTCGAAGGCGGGCGATATCCCCATCGCACTCTGTGATAAGGATGTGACTGAGCGCGCCGCCGTGATTAATGACCTCCCTCTGACGGACGTCATCGGGCCGCTCATGGACCACCAGGCGGCAGCGTCGTTGAAAGAGAGCGTTGCCAAGGAGCCATCTAACGTTGTTGCTGCCACCACGGGTGGTAGCAACGTCCCAAAGAGGGGAAGGAAATTCTCCTCCGTACTCGGGACCCGTCGGAAAGCGCCGACCTCCGCGGACTCGGACACGTCTCCTCCGCCTCAGCGAAGGCAAAGGTTGGTGACGATCGGCGAGAAGGTGGCGCGGGAAAAGGTGGCGCAAGGTGGGGCTGATGCCACATCCAGCGCGTCCCCTGCAGCGACCTCGTCGGGAGTCTTATTCGCTGCTAAGGACCAGGAGGCAGCACCGAGTGGCCCTGCCGTTAGCCCCGTGCCTACCCGGGGCCCGTCCACCGATGCCCTCACCTGGGGAGAGGTCCAAGCGGAGATGGAGCGCATCCTCCAGGCCGGTGCTCATGGCGTAGGTCGCGAGATCGAAGAGGCCAGGGCGGCAGCGTTGTCGGCAAACCAGCGTGCCGACCAGCTGGCGCGCAACCTAGCGGAGGCCCGCGAGGACCTCCTAAAGATGAGGGAGCTGGTGGCCGGCAACGAGATGCAACGGCGCGGACTCAAGCACCGGATGTCGGAGCTCGAGGGTCACATGATTGACATCCGTGGTTCGCTGCGAACATCGTTCACCAGCCTGCACCAACTCGTCGGGGAGTGTGGTGTCACGACTACCATCCCGGCGCACCCCGATGAGTTCTCGCTGACGTCGTCGCTTGCGGAATTGGCTACGGCGATGGAGGAGATCCCCTCCAATCACGCGGCCAGGATCGGCGAGGAGACGTCCAACGGCATCTACACCGGGGCGTGCCATGTCCTTGCGTGCATGAGGCTGGCATATCCCGATCTGGACCTTAAGAAGGCTTTGTATCAGGGGGCCGCCGATGACGCGCGCAAGGCTATGATGGAAGAAGTCGGTGACTTGGGTGAATATGTTGATGTCGAGGACGTCCAGCAGCGCGGGCAGCCCGATATGCCGGTGATCGTTCCGGCGCTCACACTCGAGCCGTTCGTGCTGCGGGAGGAAACTAGTCAAAGCCCGTCTGCGGAGGCGAGCGTGGCGATGACGTCATTAGATCGTCGAATCCGATATTGGAAGACGAAACTCGAGGTGGCCAAACTCGAAAAAACCATGGTGGAGGTGAAGAAGGACCAGGCCGTGGAAGCTCTCCGGGGTCGCGAGGTGTGGTTCAACTCGTACCTCAAGAGCTGCTGCACGGCGATGGCGAGGGTTTGCAAGGAGCTCCGAGTTCCCTGCGGAGATCCCGAGGAGTCGGCGGCTGGTTATATCTCGTGGTTGAATGGGGCCTGCGCACAGCTCGAAGGGATTGGCCAGCGCATCGACGATGTCCTGAAGCAGGAGTGTCGTCGAGCGAGCCGCTACGCTAGAGGACATGTGCTGGCCTGCATCCGAGATCACCGTCCGCAGCTGCACCTCAAGAAGAATATGTGA
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| Protein seq | MGVLRRNTIVAYFDDPRYKKDKNGSGIVKFRYRTLEDEYRTREKDSENEYGSPENEYRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILKDEYRTREEESEDEYGSPENKYRPREDKYGTLEEDSKEDSENEYGNPEEDSVLKKGVLIEHRGTKEFSLKYQKEVDQFFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHAHPAFDYSGPEDTTRVSPRGIFSRFSIFVLSASVSPDVSSSYSRFTGLDSDTVGRRVGQIMISVPSKAGDIPIALCDKDVTERAAVINDLPLTDVIGPLMDHQAAASLKESVAKEPSNVVAATTGGSNVPKRGRKFSSVLGTRRKAPTSADSDTSPPPQRRQRLVTIGEKVAREKVAQGGADATSSASPAATSSGVLFAAKDQEAAPSGPAVSPVPTRGPSTDALTWGEVQAEMERILQAGAHGVGREIEEARAAALSANQRADQLARNLAEAREDLLKMRELVAGNEMQRRGLKHRMSELEGHMIDIRGSLRTSFTSLHQLVGECGVTTTIPAHPDEFSLTSSLAELATAMEEIPSNHAARIGEETSNGIYTGACHVLACMRLAYPDLDLKKALYQGAADDARKAMMEEVGDLGEYVDVEDVQQRGQPDMPVIVPALTLEPFVLREETSQSPSAEASVAMTSLDRRIRYWKTKLEVAKLEKTMVEVKKDQAVEALRGREVWFNSYLKSCCTAMARVCKELRVPCGDPEESAAGYISWLNGACAQLEGIGQRIDDVLKQECRRASRYARGHVLACIRDHRPQLHLKKNM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.153213 | 0.0512805 | 0.051708 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0186600 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g35970 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0186600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0023230 | RBH | 1.433885 | 0.000000 | 0.787610 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0023270 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0023300 | RBH | 0.000000 | 0.033816 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0023090 | RBH | 7.877664 | 0.000000 | 4.153811 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0337900 | RBH | 0.001968 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0022860 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0165000 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0023130 | RBH | 3.604309 | 0.809162 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0023180 | RBH | 3.629723 | 3.323472 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0023230 | RBH | 6.096070 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0023070 | RBH | 0.300182 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0022930 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022940 | RBH | 0.100551 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022900 | RBH | 11.301925 | 77.223228 | 30.074314 |
