Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_02G0378700 | OGI:02061390 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr02:22772928-22777424 | ||||||||
| Gene Symbol | OsbHLH097 | ||||||||||
| DNA seq | CACGAAGATTTCATAAATATATATAATTTTGGCACTTCATCCAATATGTCTCACCAAACTCGGAACAAATCATAACCAGCATGAGTAAAGACATAATTTACAAAAATTTGTGAACTATATAGATCAAATATCAAGGTACTGAATGGCATTGTCCGCAAGGACCGCAACAATACAAAATATAATTATATATGATTTAATAACTAACCTCCATATAACAATTTTCTAATCACCGGCAAAATGTAGTTCGAGATCACCAGTTGCAACTTGCAATTAAAATTTCATAATAATAAACATATAAGTAGCAAAGTGTTAGGATCTAAATTAAGCTCCATCTCTCCTGAACAAAGCAGAGGTTCTAGCTTAGACTCTGGACCTCATCTCCTTCGGCCGGCCGACAGGAGGCCTCCTCGGTGCGTCAAACTCTCCCTTCACGTCCTCCTCGTCGCCGCCGCCATCGCCATCACCGTTCTTCTTCTTCTCCGGTCGGACGGCGGCCGAGGACGTCCCCTTCTGTGCCGATATCGCCGACGCCAGCGCCACCGGCATGAGGCAGAGCCCCTTGCTCTGCAGGTACTGCATCGCCGTCGTCATGTTGTCCTCCATCAGCTTCACCACCTCCTGCTCGAACATGGCGCCGCCGTCCAGGAGCTCCGGCTGATCGCCGGGGAGCCCTCCTGTTACTGCTCCTGCTCCTGCCTGCCTTTCTCCTGATGATGATCTTGGGGACAGGAGAAACCCGGGGCTCTGCATCAACAGTTTCAGTGAGTGCATTGTGATTAACAGGATTAACCGCTTCCTGTTCTTTGACCTGATTGCATCAGCAGTGGTAAACAAGTTAGAATGTTATTGTGAATTGATTTTGTTGGTTTACCTCGGTTTGTGTTTCTGTCAGAAGAGGGACAACGGCTTCGGCCGCTCCAAGCCTGCTCATGCTAAGGACCTTCAAAGGACAGCAATGGCATTAGTACAGAAGCAGAAAATAGCTTGTCAATTGAAACAAACATAGCTGTGAAAACGAGCGGTTGTGGTGGCACGCAAACCTTGACTTGTAATTGGAGAAATTTCACATAGTCGATGATCTCATCGAGCATGGATGCCTTGTTAGTCTGCACAACAGAAAAACAAATTGTCATCTCAGATCACAAGCATCTCAACGAGGTACTACTAATCTAGCATTATCTGGTAATAAAGAAGCATGGCAGTAAGTAGACTACCTTGTTTGAGTTTGGGACAAGCTCCTGTAAATCCTTCATCCTGTCAGAGATCTTCTCCCTCCGGAGCTACAAACAGGAGATCACCACAGAGTCAAACAGTCTGCTGTAATCCGTTGTTCTACAGTTCTTCTAGCTGAACTAACCACTGGAATTCAAGCAGAACAAGAATCACATGAACCCACTCACCCTCTCTGCGATGCTGTGGGGATCGGTGGCCTGGCCTCGGCGAGCCCTGACACGAGGCTTGGGTGCTCCATTCCCAGCACTACCACTCCCATTGCCCTTTGGTAGCACCTCAGATAGGTTCACAAATGGAGCGGCGCCGCCATTTTTGCCACCGCAAGCTTCAGCAGGCTGTATGCACAACAGTTCTTGCTCAGGTTTTCAGGACATCAGATATTGCAGAGGAATTCGACTGATTTACTAAAAGATTGGCAAATCAAGATGGACAAGGAAGGACAAGAACCTGTCTATGGCTCTGTGTTGCATTGAATGATGCGAGTGGTCCAGAAATCAGCGAGGAGAGATTGAGGTGGTGCAGGCCACTGCTGAATTCCTGAAAAAAATTGCAGCTCAGGTTGTTAGGTAAACTGAAGTATCAGGGTCCGATTCTATCTCAGCCTTTAGCTAACTAATACTGTACCGTGCTGTGCTGCTTTATTTAGATAGCGATAAATCGGCACTATATATTGACTTAACATGCATATCTACTTAGAAGAATTGAGGTCAAGCATGTCGCATAAAACAAAAAAGACAAAACATTTTATTGAGCTCATCCTCACCTTCTGGTCGATCTGCAGGCTGTCAATGCTGGGGGTAACGTGCTGCTGTCCAGAAGCAAAAGACATCAATTTTCCAGTGTTGAAATCGATGTCATCCTGCAATTCCAAGACATTAAGGGCATGTTTAGTTCTCAAACAAAATTTTTCACGCTGTCATATTGAATATTTGGACACATGCATGGAGTATTAAATGTAGACTAAAAAAACAAAACCAATTACAGAAATTGCTAGACGAATCTTTTAAGCCTAATTGCACCATGATTTGACAATGTGGTGCTACAGTAAACATTTGCTAATGACGGATTAATTAGGCTTAATAAATTCGTCTTACGGGAAAAGTTTCCTCGCGGAATTTATAATTTGTTTCGTTATTAGACTACGTTTAATACTTCAAATGTGTATCCGTATATCCGATGTGATATGCATGGGCAAAAATTTTTGCCAACTAAACAAGCCTAAAATGTTACCACTGGCGATGAATGATGCTTTTACATGGTAAATGTCAGATTCAATTCAGGGTTCTTGTTACTCACATTCAGATGATGCGGCTGCGACGAAGGCACAACGCCCAGCTGCTGCTGCTGCTGATGATGATGATACTTGCTCACGTTCGCCTCCTGCAGGAGATCGCCATTGAAGAGGCTGCCAAAGCCGAAGCTCTGCGGCGTTTCTTCTCCCGCGGCCATGGACGGGAGTACACCTCCCGCGGCGTAGGCCGCCGGCGGCACGTGCTGCTGCTGCTCTCCGACGAGGAAGCCGCCTCCTGCAGGCATGGCGGCGGAGTGCTCGCTCCCGCTGCTGTCGTTGGAGCTGCTGCTGCAGATGACCGGGGGGCCGCCGCTGTCGGTGAGCGGCATGGCGCACGGCTCCAGCGCGCCGAGCATCGCGGCGTCGCCGTCGTCGTCCATCGCGGCGAAGCCGAGGCCGTCGCCGTGGCGCAGCAGCTCGGCCTCCAGCAGCAGCTGCTGCTGCTCGTGCAGCCTCGCCGTACTGGGAGACGACGCGGCGGTCTTGCCGAGGAACGCGGCCTCCTCGTCGTCGACGGCCCCGTAGCTCACCAAAGCGTCGGCGAGGGAGGAGACGCCGCCTGCGGCCCACGGCGAGCCAGCGAACACGGCGTGCCGCGACCACGCCGGCGACGGCGTGAAGGGGTAGGCGAAGCCGCCCATTCCGATCTCCGGTGCAATCCACTGAACAAAACAAGAACGAAAAAATTATATATATATATATATATATATATATATATATATATATATTATATATAAAAACTCCTTTCAGATCAATTGAATTTGAGATCCATAGAACAACGTTTTTTTTAAAAAGAAAATGATTGCTAGAAGCAATAAATAATTTATCCATGTGGTACTCCTAAGTATAGATCATTATGCATGGCCTCATTCATGGTCAGACAGGTGATCAAGTTTAAGAGAGTGTTGAGCAAGTTGTTCTACTCAGACAGAACTACATCTTTGTTTTTTTTTTCTTTCTCCGGGTAATCTGGTCTGACAAATTGCAGTCATATGGAAGATACTACTACTGTATTAGTATCATGGCCCTGGAAGGAGAAGAATCTCCAAGAACTCCTTACTATAAAAAAATTGTCTAACTCGACCGTTAATTTGCATCTGATATAAAGAAATGCATCAATCCAAAACAAGTCAAAGAGGCAGTACACAACACTGCAACCATAATGCAATGCCTTTTTTTTTAGTTGGTCTGAACCTGAAAAAAATTCAGAGCAATAAAAGAGACCAGGCCAAAACTGATTATGAAATCTACACCTCTAATCCAAGCGAGGCCAGATAGATTTGACTAATCTCCCCGTTCCAATTGGGATCAACAGCATTATAACTAAAACGGCCGTATGTTCATCAGGAACAAGAACGGACTAATTCTGAATATCCTTGAAAAAGGAAAAAAAAAACATTTTCACCGAAATAACACGAGCTAATCAATCCTACCAGTAAGGACTCCCCCCAAAAAGAAGAAAAGAAACTGCCGAAAAACGCAATTCACTCCCCTACAGCTCCCGCACCCAGATCAATCCCCAAACACCGATACATGCAAGAACAGCAGCACACCGATTGAGCTCGGAATTCCGCATGGATCCGGCCACCCAATTAGGCACACAGAATGAAGGAACTGGAAGCAGAGAGAGAGAGAGAGAGAGAGGATGAGATTGGCGATGGAGCTCACCGGGTGGGGGCGGTGACGACGGCTGACGAGGCGAAGTCGGAGGGCGACGTGCGGCGAGGAAGGAGGAGGAAGTGCTGTATATATATATATAACCGCCGCGCTCCGCTTTGGGCGGGGGAGGAGAAGACCGGGAGGAGAGAGAGTATGAGGAGGGAGGGAAGGAAGACGAGGCGGCACTGCACTGCACTGCACTGCTCTCCCGTCTCTCGACTCGCGTCGCGCGCTCGCCGGTTGCGGTTGATGCGTTTTTGTAGCTGCGCGCGTGTGTGATCACCGTGTGTGTCTGTCTGCGTCTGTTTGTGCGT
More
|
||||||||||
| CDS seq | ATGGGCGGCTTCGCCTACCCCTTCACGCCGTCGCCGGCGTGGTCGCGGCACGCCGTGTTCGCTGGCTCGCCGTGGGCCGCAGGCGGCGTCTCCTCCCTCGCCGACGCTTTGGTGAGCTACGGGGCCGTCGACGACGAGGAGGCCGCGTTCCTCGGCAAGACCGCCGCGTCGTCTCCCAGTACGGCGAGGCTGCACGAGCAGCAGCAGCTGCTGCTGGAGGCCGAGCTGCTGCGCCACGGCGACGGCCTCGGCTTCGCCGCGATGGACGACGACGGCGACGCCGCGATGCTCGGCGCGCTGGAGCCGTGCGCCATGCCGCTCACCGACAGCGGCGGCCCCCCGGTCATCTGCAGCAGCAGCTCCAACGACAGCAGCGGGAGCGAGCACTCCGCCGCCATGCCTGCAGGAGGCGGCTTCCTCGTCGGAGAGCAGCAGCAGCACGTGCCGCCGGCGGCCTACGCCGCGGGAGGTGTACTCCCGTCCATGGCCGCGGGAGAAGAAACGCCGCAGAGCTTCGGCTTTGGCAGCCTCTTCAATGGCGATCTCCTGCAGGAGGCGAACGTGAGCAAGTATCATCATCATCAGCAGCAGCAGCAGCTGGGCGTTGTGCCTTCGTCGCAGCCGCATCATCTGAATCAGCACGTTACCCCCAGCATTGACAGCCTGCAGATCGACCAGAAGGAATTCAGCAGTGGCCTGCACCACCTCAATCTCTCCTCGCTGATTTCTGGACCACTCGCATCATTCAATGCAACACAGAGCCATAGACAGCCTGCTGAAGCTTGCGGTGGCAAAAATGGCGGCGCCGCTCCATTTGTGAACCTATCTGAGGTGCTACCAAAGGGCAATGGGAGTGGTAGTGCTGGGAATGGAGCACCCAAGCCTCGTGTCAGGGCTCGCCGAGGCCAGGCCACCGATCCCCACAGCATCGCAGAGAGGCTCCGGAGGGAGAAGATCTCTGACAGGATGAAGGATTTACAGGAGCTTGTCCCAAACTCAAACAAGACTAACAAGGCATCCATGCTCGATGAGATCATCGACTATGTGAAATTTCTCCAATTACAAGTCAAGGTCCTTAGCATGAGCAGGCTTGGAGCGGCCGAAGCCGTTGTCCCTCTTCTGACAGAAACACAAACCGAGAGCCCCGGGTTTCTCCTGTCCCCAAGATCATCATCAGGAGAAAGGCAGGCAGGAGCAGGAGCAGTAACAGGAGGGCTCCCCGGCGATCAGCCGGAGCTCCTGGACGGCGGCGCCATGTTCGAGCAGGAGGTGGTGAAGCTGATGGAGGACAACATGACGACGGCGATGCAGTACCTGCAGAGCAAGGGGCTCTGCCTCATGCCGGTGGCGCTGGCGTCGGCGATATCGGCACAGAAGGGGACGTCCTCGGCCGCCGTCCGACCGGAGAAGAAGAAGAACGGTGATGGCGATGGCGGCGGCGACGAGGAGGACGTGAAGGGAGAGTTTGACGCACCGAGGAGGCCTCCTGTCGGCCGGCCGAAGGAGATGAGGTCCAGAGTCTAA
More
|
||||||||||
| Protein seq | MGGFAYPFTPSPAWSRHAVFAGSPWAAGGVSSLADALVSYGAVDDEEAAFLGKTAASSPSTARLHEQQQLLLEAELLRHGDGLGFAAMDDDGDAAMLGALEPCAMPLTDSGGPPVICSSSSNDSSGSEHSAAMPAGGGFLVGEQQQHVPPAAYAAGGVLPSMAAGEETPQSFGFGSLFNGDLLQEANVSKYHHHQQQQQLGVVPSSQPHHLNQHVTPSIDSLQIDQKEFSSGLHHLNLSSLISGPLASFNATQSHRQPAEACGGKNGGAAPFVNLSEVLPKGNGSGSAGNGAPKPRVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASMLDEIIDYVKFLQLQVKVLSMSRLGAAEAVVPLLTETQTESPGFLLSPRSSSGERQAGAGAVTGGLPGDQPELLDGGAMFEQEVVKLMEDNMTTAMQYLQSKGLCLMPVALASAISAQKGTSSAAVRPEKKKNGDGDGGGDEEDVKGEFDAPRRPPVGRPKEMRSRV |
||||||||||
| Function | bHLH transcription factor RHL1 [UniProtKB/Swiss-Prot:D0PX88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_02G0378700 | OsZS97_02T0378700-mRNA-1 | Chr02 | 22772928 | 22777424 | - | makerRMon | ||
| CDS seq | ATGGGCGGCTTCGCCTACCCCTTCACGCCGTCGCCGGCGTGGTCGCGGCACGCCGTGTTCGCTGGCTCGCCGTGGGCCGCAGGCGGCGTCTCCTCCCTCGCCGACGCTTTGGTGAGCTACGGGGCCGTCGACGACGAGGAGGCCGCGTTCCTCGGCAAGACCGCCGCGTCGTCTCCCAGTACGGCGAGGCTGCACGAGCAGCAGCAGCTGCTGCTGGAGGCCGAGCTGCTGCGCCACGGCGACGGCCTCGGCTTCGCCGCGATGGACGACGACGGCGACGCCGCGATGCTCGGCGCGCTGGAGCCGTGCGCCATGCCGCTCACCGACAGCGGCGGCCCCCCGGTCATCTGCAGCAGCAGCTCCAACGACAGCAGCGGGAGCGAGCACTCCGCCGCCATGCCTGCAGGAGGCGGCTTCCTCGTCGGAGAGCAGCAGCAGCACGTGCCGCCGGCGGCCTACGCCGCGGGAGGTGTACTCCCGTCCATGGCCGCGGGAGAAGAAACGCCGCAGAGCTTCGGCTTTGGCAGCCTCTTCAATGGCGATCTCCTGCAGGAGGCGAACGTGAGCAAGTATCATCATCATCAGCAGCAGCAGCAGCTGGGCGTTGTGCCTTCGTCGCAGCCGCATCATCTGAATCAGCACGTTACCCCCAGCATTGACAGCCTGCAGATCGACCAGAAGGAATTCAGCAGTGGCCTGCACCACCTCAATCTCTCCTCGCTGATTTCTGGACCACTCGCATCATTCAATGCAACACAGAGCCATAGACAGCCTGCTGAAGCTTGCGGTGGCAAAAATGGCGGCGCCGCTCCATTTGTGAACCTATCTGAGGTGCTACCAAAGGGCAATGGGAGTGGTAGTGCTGGGAATGGAGCACCCAAGCCTCGTGTCAGGGCTCGCCGAGGCCAGGCCACCGATCCCCACAGCATCGCAGAGAGGCTCCGGAGGGAGAAGATCTCTGACAGGATGAAGGATTTACAGGAGCTTGTCCCAAACTCAAACAAGACTAACAAGGCATCCATGCTCGATGAGATCATCGACTATGTGAAATTTCTCCAATTACAAGTCAAGGTCCTTAGCATGAGCAGGCTTGGAGCGGCCGAAGCCGTTGTCCCTCTTCTGACAGAAACACAAACCGAGAGCCCCGGGTTTCTCCTGTCCCCAAGATCATCATCAGGAGAAAGGCAGGCAGGAGCAGGAGCAGTAACAGGAGGGCTCCCCGGCGATCAGCCGGAGCTCCTGGACGGCGGCGCCATGTTCGAGCAGGAGGTGGTGAAGCTGATGGAGGACAACATGACGACGGCGATGCAGTACCTGCAGAGCAAGGGGCTCTGCCTCATGCCGGTGGCGCTGGCGTCGGCGATATCGGCACAGAAGGGGACGTCCTCGGCCGCCGTCCGACCGGAGAAGAAGAAGAACGGTGATGGCGATGGCGGCGGCGACGAGGAGGACGTGAAGGGAGAGTTTGACGCACCGAGGAGGCCTCCTGTCGGCCGGCCGAAGGAGATGAGGTCCAGAGTCTAA
More
|
|||||||
| Protein seq | MGGFAYPFTPSPAWSRHAVFAGSPWAAGGVSSLADALVSYGAVDDEEAAFLGKTAASSPSTARLHEQQQLLLEAELLRHGDGLGFAAMDDDGDAAMLGALEPCAMPLTDSGGPPVICSSSSNDSSGSEHSAAMPAGGGFLVGEQQQHVPPAAYAAGGVLPSMAAGEETPQSFGFGSLFNGDLLQEANVSKYHHHQQQQQLGVVPSSQPHHLNQHVTPSIDSLQIDQKEFSSGLHHLNLSSLISGPLASFNATQSHRQPAEACGGKNGGAAPFVNLSEVLPKGNGSGSAGNGAPKPRVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASMLDEIIDYVKFLQLQVKVLSMSRLGAAEAVVPLLTETQTESPGFLLSPRSSSGERQAGAGAVTGGLPGDQPELLDGGAMFEQEVVKLMEDNMTTAMQYLQSKGLCLMPVALASAISAQKGTSSAAVRPEKKKNGDGDGGGDEEDVKGEFDAPRRPPVGRPKEMRSRV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.4012255 | 3.2399055 | 0.024874 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0564700 | RBH | 0.199471 | 0.000000 | 1.008453 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35660 | RBH | 0.134893 | 0.000000 | 0.259596 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0564700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021570 | RBH | 0.0 | 0.000000 | 1.060113 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021660 | RBH | 0.0 | 0.000000 | 1.270323 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021670 | RBH | 0.0 | 1.128839 | 0.831082 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021370 | RBH | 0.0 | 0.149036 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021320 | RBH | 0.0 | 2.265391 | 4.064031 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0351800 | RBH | 0.1550065 | 3.9594945 | 0.012022 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0021050 | RBH | 0.0 | 0.077375 | 0.413116 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021500 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021240 | RBH | 0.0 | 1.534297 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021700 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021400 | RBH | 0.0 | 0.120841 | 0.116529 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021670 | RBH | 0.0 | 0.0 | 0.180766 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021450 | RBH | 0.0 | 6.020339 | 2.389860 |
