Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsZS97_02G0242800 OGI:02040260 | 3/16 Zhenshan 97 | ZS97RS3 | HZAU Chr02:14626189-14630211
Gene Symbol -
DNA seq

TCAAGCCTCATCATCATCGCCATCAGAAGGAATGATCTCGGTGTCGCCGGAGTGAGGAGAGTCGATGTCTTGCCCGGCGGCGTCCACTGCCTCATCTGGATCTGTAGGAATATTCTCAGTAGGTGCATCTGACTCCTCATCATCGCTGCTCTCCTCGGAGTGAGAGGACTCCTCATTGAAGAAACGAGAAGTGCCAGAGGGACCCTCACCACTAGCAATGTCTCGAGCAGTCTCATAAGCAGCAAAAGGATCAACAAACTCCTCATCATCAGAAATGTCAGAGACATCCTTGTCTGCTGCAATCCAATCTTCCTTCTGACGCCTCTCTATCTTGTTTACCTTCTTAGCTATCTTGGCACACATACAAAAGATAGCCCTGAGAGCCTTCTTTATGGGAGAAGAAGACTCAGAACACTGTGGTGCAGCAGAGGAAGAAGGAGCAGCTGAGGTGGAAGCACGAGTGACTCTGGTAGTAGAAGTAGTTGAAGTAGTGGGAGCACGAGGACAAAAAGGCTTGTGTTGATTGTCCTTGAAATAACAAATCCCAGTCTTGGCCTCAATCATCTTCATGATATAAGGAGCATAGATGCAACCCCTCTTTGGCTCACACACTGTCTCGTAGATCTCACTCCAGATAAGCTTCATGATGCTGAAATCTGGTTTGTTGTAGCGCATGCGACTGAGGAGGAGCACATGCCTACCTAGAAGAGCTGTAGCATCTCCCACTTTGGGGAGCAAAGACCACCTGAAGATCGAGTACAACACTCTATAGTATGGACGCAACCCTCGAGTAGTCCCCAAACAATCCTTGGGAGCATCCTTCTCATACATAAAGGTAGTGTTGGTCGGTGACAGAGCATCCTCTACAATGATATGTGGGCGACTCAGGTCATCATCATCTAACCCCAAAGCTGCAGCAAACTGTGCCATAGAGACCCTATACTACTACCCCTGAATGGTCCACTTCACAAAATCAAGCCCCTTCTTGGTGGTGCCAAAGAAAGCAGTGGAGTAGAACTGACCAGTCACTTCCTCATTCCAGGAATACTGCAAGGCTAACAAATCTGCCACGTCTTGCGCTCACACACCTTGCGCACCTCATTGAAAACTAAGTTGTTCTTTGAGGACATGTACTGCCAGTCTAGCCACTTCATCTCTACCACTGGATGAGATCTTCCCATGATCACAGAATTATACCAATCAACCTGCACCAAGGTCCTGAATCTGTCATCCTGAGAGTCAGCAGGCAAAGTATCAGGACTCATCATTGTCCTTTCCACACTTGAGCAGATTTTTCAGATAGTTCACTCTTGGGCATCTAGGATCAGGATCAACAGCCCTTGTCTTGTAAAGCCTCAAGGGATTGCTTTCAGAACCAGGCTCATCCTCATTGCCACCATCATCTGACTCTGATGCAGCTGGAGAGGGAGAGCGGGGAGCATCACGAATGACAATGCTACCATTCCTCCTGAAATGGATCGGAATCTGACTCCCACTGTAAAAATCTCCAACGTTTTCTTTGCCCAATCTCCCCCTAGGACCACGAACTGGGGGGCTCGAGTCAGTAGGAACATCTTGTGAAAGCTTCTGTCTCTTCTCACGAGGCATAATGACCACTGCAACAAGAATCAACAAGGTTGGAGTGCAATGGTTAAAAGAAACAGTAGCAGAATCAAGGTTACTGGCTGGCTGGACAGAGACCGGAAGTTCTGGGCCAAGAACACCGGAACTTCCGGCCTACAAAACTGAAGAACAGAGGATTTAACCAGGCCAGTGCATGTGACAAAATCCTATAGATCGGCAATCTACAAGGTAGCAAGAACAATTCTATCAAAAAGGTTTTCTCCCTAGGTTCACATATTTAGAGATCGGGGCAAAAACATGATGAACCAAAATAGAAGATCAAAAGTGCTACCTAGAGAGGAGAAATCGCAAATCGATCGCGGGATGAACCTCCTAGCCACCAATGTAGTTGATTCCACGGAGAGGAATCAAATTTCCATGGTTTGAATAGAAAATCGCCGAGAGGAGCACTGTAGTGGCGGCTAGGGTTTGGGAATCGGGGAGGAGAAGAAGTGAGGAGAGAGAGAACAGGCTCGGGCTACCCCGGGTATTTATACCCCCGACCCCCGGAAGTTCCAGGCTGGGATGACCGGAACTTCCGGCCTGACAGAATAGAGGGCAGTCAGGCCCAAGTTCAAAGGAATAGATGAGAATTCAATGATTTAGAAATAAAAACCTATGAATATATAGAGACTTATGATGCATATGACCAGCCAACAATCAACATTACATAACAATGGTCAATATACATCACAAGAAGGGATAAAAACCAAATTTTCTCAATAAAAACACACACAAAAAATGTTGCAAAATTTCACAAAAGGGTTTTTGGATAATAGAGGGAATGTTTGAGCTTTATTCCTAGTATCAAGACCATCTTCTACACAAGAAGTGATCTCAAGACACAAAAGCTCTTTTTTTTTTAATTTACATTTTAGTGACACATTTTGGCTATGAATTAGCCAACCACCCATCACCTAATGTTACGAGAGTCTAAGATATTGAGCTCACCCCTAAGCTCGCAAAATCTTTTCTCATCTAAAGGCTTGGTGAAAATGTCGGCTAATTGGGTCTTGGTTCTCACATGGTAAGGCATATGTCTCATTTAGTCTCGTGATCTCTCAAAAAGTGGTGGCGAATATCTATGTGCTTGGTTCTTGAGCGTTGGGCGGGATTATTGGCTATTTTGATGGCACTCTCATTGTCACATAGGAGTGGGATCTTGGTGAAGTTGTAGCCAAAGTATTTTAGGGTTTGTTTCATCCAAAGGAGTTGGGCACAACAAGAATCGGCGGCGATATATTCGGCTTCGGCGATGGATAAAGCAATGGAATTTTGCTTCTTGGAGAACCAAGAAACAAGGGACCGCCCAAGAAATTGACAAGTCCCGATTGTACTTTTTCTATGAACCTTACACCCGGCATAATCCGAATCGGAATAGCCCAAAAGCTCAAAGTCACAACCCTTAGGATACCACAAGCCAAGATTAGGAGTGTGAACTAAATATCTTAGAATTCTCTTGACGGCAATCAAATGGCACTCTTTAGGCTCCGCTTGAAAACGGGCACACATACACACACTAAGCCTGATGTCGGGACGAGATGCACATAAGTAAAGCAAAGATCCTATCATGGAGCGATATACCTTTTGGTCCACACATTTACCATTATCGTCGAGGTCAAGGTGGCCATTAGTAGGCATGGGCGTCTTGATAGGTTTGGCATCCTCCATCCCAAACTTCTTGAGTATGTCTTTCACGTACTTGGTTTGAGAGATGAAGGTGCCCTCTTGTGCTTGCTTCACTTGTAGCCCGAGGAAGAAGGTCAACTCGCCCATCATAGACATCTCGAACCTTTTAGTCATGATACTACTAAATTCTTCACAAAAAGAGGCATTAGTAGAACCAAATATTATGTCATCGACATAAATTTGGCATATGAATAAATCACTCTTATATGTTTTAGTGAAGAGAGTAGTGTCCGCCTTTCCAATTTTAAAACCATTCTTCAAAAGAAAATCTCGGAGACATTCATACCAAGCTCTAGGGGCTTGCTTGAGCCCATAGAGCGCCTTGTGGAGCTTGTACAGATGGTTTGGCAACTTTGGATCCTCGAACCCCGGTGGTTGCTCCACATAGACCAACTCAGAGATAGGTCCATTGAGAAAGGCACTCTTGACATCCATTTGGAATAACCTGAAATCATGGTGAGCGGCATAGGCTAAAAGAATTCTAATTAGCTCAAGGCAAGCGACAGGTGCGAAGGTTTCACCAACATCGTGGCCCTCGACTTGGGTGAACCCTTGCGCAACTAACCGGGCTTTGTTCCTTACAACCACCTCATGTTCATCTTGCTTGTTGCGAATGATCCACTTGGTGCCGATGACATTTTGCTTGGGTCTCTCCACCAAAGTCCATACTTGGTTGCGAGTGAAGTTATTTAACTCCCCTTGCATGGCCAT

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CDS seq

ATGGCCATGCAAGGGGAGTTAAATAACTTCACTCGCAACCAAGTATGGACTTTGGTGGAGAGACCCAAGCAAAATGTCATCGGCACCAAGTGGATCATTCGCAACAAGCAAGATGAACATGAGGTGGTTGTAAGGAACAAAGCCCGGTTAGTTGCGCAAGGGTTCACCCAAGTCGAGGGCCACGATGTTGGTGAAACCTTCGCACCTGTCGCTTGCCTTGAGCTAATTAGAATTCTTTTAGCCTATGCCGCTCACCATGATTTCAGGTTATTCCAAATGGATGTCAAGAGTGCCTTTCTCAATGGACCTATCTCTGAGTTGGTCTATGTGGAGCAACCACCGGGGTTCGAGGATCCAAAGTTGCCAAACCATCTGTACAAGCTCCACAAGGCGCTCTATGGGCTCAAGCAAGCCCCTAGAGCTTGGTATGAATGTCTCCGAGATTTTCTTTTGAAGAATGGTTTTAAAATTGGAAAGGCGGACACTACTCTCTTCACTAAAACATATAAGAGTGATTTATTCATATGCCAAATTTATGTCGATGACATAATATTTGGTTCTACTAATGCCTCTTTTTGTGAAGAATTTAGTAGTATCATGACTAAAAGGTTCGAGATGTCTATGATGGGCGAGTTGACCTTCTTCCTCGGGCTACAAGTGAAGCAAGCACAAGAGGGCACCTTCATCTCTCAAACCAAGTACGTGAAAGACATACTCAAGAAGTTTGGGATGGAGGATGCCAAACCTATCAAGACGCCCATGCCTACTAATGGCCACCTTGACCTCGACGATAATGGTAAATGTGTGGACCAAAAGGCCGGAAGTTCCGGTGTTCTTGGCCCAGAACTTCCGGTCTCTGTCCAGCCAGCCAGTAACCTTGATTCTGCTACTGTTTCTTTTAACCATTGCACTCCAACCTTGTTGATTCTTGTTGCAGTGGTCATTATGCCTCGTGAGAAGAGACAGAAGCTTTCACAAGATGTTCCTACTGACTCGAGCCCCCCAGTTCGTGGTCCTAGGGGGAGATTGGGCAAAGAAAACGTTGGAGATTTTTACAGTGGGAGTCAGATTCCGATCCATTTCAGGAGGAATGGTAGCATTGTCATTCGTGATGCTCCCCGCTCTCCCTCTCCAGCTGCATCAGAGTCAGATGATGGTGGCAATGAGGATGAGCCTGGTTCTGAAAGCAATCCCTTGAGGCTTTACAAGACAAGGGCTGTTGATCCTGATCCTAGATGCCCAAGAGATGACAGATTCAGGACCTTGGTGCAGGTTGATTGGTATAATTCTGTGATCATGGGAAGATCTCATCCAGTGGTAGAGATGAAGTGGCTAGACTGGCAGTACATGTCCTCAAAGAACAACTTAGTTTTCAATGAGGTGCGCAAGTTTGCTGCAGCTTTGGGGTTAGATGATGATGACCTGAGTCGCCCACATATCATTGTAGAGGATGCTCTGTCACCGACCAACACTACCTTTATGTATGAGAAGGATGCTCCCAAGGATTGTTTGGGGACTACTCGAGGGTTGCGTCCATACTATAGAGTGTTGTACTCGATCTTCAGGTGGTCTTTGCTCCCCAAAGTGGGAGATGCTACAGCTCTTCTAGGTAGGCATGTGCTCCTCCTCAGTCGCATGCGCTACAACAAACCAGATTTCAGCATCATGAAGCTTATCTGGAGTGAGATCTACGAGACAGTGTGTGAGCCAAAGAGGGGTTGCATCTATGCTCCTTATATCATGAAGATGATTGAGGCCAAGACTGGGATTTGTTATTTCAAGGACAATCAACACAAGCCTTTTTGTCCTCGTGCTCCCACTACTTCAACTACTTCTACTACCAGAGTCACTCGTGCTTCCACCTCAGCTGCTCCTTCTTCCTCTGCTGCACCACAGTGTTCTGAGTCTTCTTCTCCCATAAAGAAGGCTCTCAGGGCTATCTTTTGTATGTGTGCCAAGATAGCTAAGAAGGTAAACAAGATAGAGAGGCGTCAGAAGGAAGATTGGATTGCAGCAGACAAGGATGTCTCTGACATTTCTGATGATGAGGAGTTTGTTGATCCTTTTGCTGCTTATGAGACTGCTCGAGACATTGCTAGTGGTGAGGGTCCCTCTGGCACTTCTCGTTTCTTCAATGAGGAGTCCTCTCACTCCGAGGAGAGCAGCGATGATGAGGAGTCAGATGCACCTACTGAGAATATTCCTACAGATCCAGATGAGGCAGTGGACGCCGCCGGGCAAGACATCGACTCTCCTCACTCCGGCGACACCGAGATCATTCCTTCTGATGGCGATGATGATGAGGCTTGA

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Protein seq

MAMQGELNNFTRNQVWTLVERPKQNVIGTKWIIRNKQDEHEVVVRNKARLVAQGFTQVEGHDVGETFAPVACLELIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFEDPKLPNHLYKLHKALYGLKQAPRAWYECLRDFLLKNGFKIGKADTTLFTKTYKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSMMGELTFFLGLQVKQAQEGTFISQTKYVKDILKKFGMEDAKPIKTPMPTNGHLDLDDNGKCVDQKAGSSGVLGPELPVSVQPASNLDSATVSFNHCTPTLLILVAVVIMPREKRQKLSQDVPTDSSPPVRGPRGRLGKENVGDFYSGSQIPIHFRRNGSIVIRDAPRSPSPAASESDDGGNEDEPGSESNPLRLYKTRAVDPDPRCPRDDRFRTLVQVDWYNSVIMGRSHPVVEMKWLDWQYMSSKNNLVFNEVRKFAAALGLDDDDLSRPHIIVEDALSPTNTTFMYEKDAPKDCLGTTRGLRPYYRVLYSIFRWSLLPKVGDATALLGRHVLLLSRMRYNKPDFSIMKLIWSEIYETVCEPKRGCIYAPYIMKMIEAKTGICYFKDNQHKPFCPRAPTTSTTSTTRVTRASTSAAPSSSAAPQCSESSSPIKKALRAIFCMCAKIAKKVNKIERRQKEDWIAADKDVSDISDDEEFVDPFAAYETARDIASGEGPSGTSRFFNEESSHSEESSDDEESDAPTENIPTDPDEAVDAAGQDIDSPHSGDTEIIPSDGDDDEA

Function Retrovirus-related Pol polyprotein from transposon RE1 [UniProtKB/Swiss-Prot:Q94HW2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsZS97_02G0242800 OsZS97_02T0242800.1 Chr02 14626189 14630211 - makerRMon
CDS seq

ATGGCCATGCAAGGGGAGTTAAATAACTTCACTCGCAACCAAGTATGGACTTTGGTGGAGAGACCCAAGCAAAATGTCATCGGCACCAAGTGGATCATTCGCAACAAGCAAGATGAACATGAGGTGGTTGTAAGGAACAAAGCCCGGTTAGTTGCGCAAGGGTTCACCCAAGTCGAGGGCCACGATGTTGGTGAAACCTTCGCACCTGTCGCTTGCCTTGAGCTAATTAGAATTCTTTTAGCCTATGCCGCTCACCATGATTTCAGGTTATTCCAAATGGATGTCAAGAGTGCCTTTCTCAATGGACCTATCTCTGAGTTGGTCTATGTGGAGCAACCACCGGGGTTCGAGGATCCAAAGTTGCCAAACCATCTGTACAAGCTCCACAAGGCGCTCTATGGGCTCAAGCAAGCCCCTAGAGCTTGGTATGAATGTCTCCGAGATTTTCTTTTGAAGAATGGTTTTAAAATTGGAAAGGCGGACACTACTCTCTTCACTAAAACATATAAGAGTGATTTATTCATATGCCAAATTTATGTCGATGACATAATATTTGGTTCTACTAATGCCTCTTTTTGTGAAGAATTTAGTAGTATCATGACTAAAAGGTTCGAGATGTCTATGATGGGCGAGTTGACCTTCTTCCTCGGGCTACAAGTGAAGCAAGCACAAGAGGGCACCTTCATCTCTCAAACCAAGTACGTGAAAGACATACTCAAGAAGTTTGGGATGGAGGATGCCAAACCTATCAAGACGCCCATGCCTACTAATGGCCACCTTGACCTCGACGATAATGGTAAATGTGTGGACCAAAAGGCCGGAAGTTCCGGTGTTCTTGGCCCAGAACTTCCGGTCTCTGTCCAGCCAGCCAGTAACCTTGATTCTGCTACTGTTTCTTTTAACCATTGCACTCCAACCTTGTTGATTCTTGTTGCAGTGGTCATTATGCCTCGTGAGAAGAGACAGAAGCTTTCACAAGATGTTCCTACTGACTCGAGCCCCCCAGTTCGTGGTCCTAGGGGGAGATTGGGCAAAGAAAACGTTGGAGATTTTTACAGTGGGAGTCAGATTCCGATCCATTTCAGGAGGAATGGTAGCATTGTCATTCGTGATGCTCCCCGCTCTCCCTCTCCAGCTGCATCAGAGTCAGATGATGGTGGCAATGAGGATGAGCCTGGTTCTGAAAGCAATCCCTTGAGGCTTTACAAGACAAGGGCTGTTGATCCTGATCCTAGATGCCCAAGAGATGACAGATTCAGGACCTTGGTGCAGGTTGATTGGTATAATTCTGTGATCATGGGAAGATCTCATCCAGTGGTAGAGATGAAGTGGCTAGACTGGCAGTACATGTCCTCAAAGAACAACTTAGTTTTCAATGAGGTGCGCAAGTTTGCTGCAGCTTTGGGGTTAGATGATGATGACCTGAGTCGCCCACATATCATTGTAGAGGATGCTCTGTCACCGACCAACACTACCTTTATGTATGAGAAGGATGCTCCCAAGGATTGTTTGGGGACTACTCGAGGGTTGCGTCCATACTATAGAGTGTTGTACTCGATCTTCAGGTGGTCTTTGCTCCCCAAAGTGGGAGATGCTACAGCTCTTCTAGGTAGGCATGTGCTCCTCCTCAGTCGCATGCGCTACAACAAACCAGATTTCAGCATCATGAAGCTTATCTGGAGTGAGATCTACGAGACAGTGTGTGAGCCAAAGAGGGGTTGCATCTATGCTCCTTATATCATGAAGATGATTGAGGCCAAGACTGGGATTTGTTATTTCAAGGACAATCAACACAAGCCTTTTTGTCCTCGTGCTCCCACTACTTCAACTACTTCTACTACCAGAGTCACTCGTGCTTCCACCTCAGCTGCTCCTTCTTCCTCTGCTGCACCACAGTGTTCTGAGTCTTCTTCTCCCATAAAGAAGGCTCTCAGGGCTATCTTTTGTATGTGTGCCAAGATAGCTAAGAAGGTAAACAAGATAGAGAGGCGTCAGAAGGAAGATTGGATTGCAGCAGACAAGGATGTCTCTGACATTTCTGATGATGAGGAGTTTGTTGATCCTTTTGCTGCTTATGAGACTGCTCGAGACATTGCTAGTGGTGAGGGTCCCTCTGGCACTTCTCGTTTCTTCAATGAGGAGTCCTCTCACTCCGAGGAGAGCAGCGATGATGAGGAGTCAGATGCACCTACTGAGAATATTCCTACAGATCCAGATGAGGCAGTGGACGCCGCCGGGCAAGACATCGACTCTCCTCACTCCGGCGACACCGAGATCATTCCTTCTGATGGCGATGATGATGAGGCTTGA

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Protein seq

MAMQGELNNFTRNQVWTLVERPKQNVIGTKWIIRNKQDEHEVVVRNKARLVAQGFTQVEGHDVGETFAPVACLELIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFEDPKLPNHLYKLHKALYGLKQAPRAWYECLRDFLLKNGFKIGKADTTLFTKTYKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSMMGELTFFLGLQVKQAQEGTFISQTKYVKDILKKFGMEDAKPIKTPMPTNGHLDLDDNGKCVDQKAGSSGVLGPELPVSVQPASNLDSATVSFNHCTPTLLILVAVVIMPREKRQKLSQDVPTDSSPPVRGPRGRLGKENVGDFYSGSQIPIHFRRNGSIVIRDAPRSPSPAASESDDGGNEDEPGSESNPLRLYKTRAVDPDPRCPRDDRFRTLVQVDWYNSVIMGRSHPVVEMKWLDWQYMSSKNNLVFNEVRKFAAALGLDDDDLSRPHIIVEDALSPTNTTFMYEKDAPKDCLGTTRGLRPYYRVLYSIFRWSLLPKVGDATALLGRHVLLLSRMRYNKPDFSIMKLIWSEIYETVCEPKRGCIYAPYIMKMIEAKTGICYFKDNQHKPFCPRAPTTSTTSTTRVTRASTSAAPSSSAAPQCSESSSPIKKALRAIFCMCAKIAKKVNKIERRQKEDWIAADKDVSDISDDEEFVDPFAAYETARDIASGEGPSGTSRFFNEESSHSEESSDDEESDAPTENIPTDPDEAVDAAGQDIDSPHSGDTEIIPSDGDDDEA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0 0.0088055 0.0198075

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g24490 RBH 0.000000 0.000000 0.000000
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0229200 RBH 0 0 0.091353
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0050400 SBH 0 0.0530355 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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