Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_02G0088300 | OGI:02015180 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr02:5059828-5064891 | ||||||||
| Gene Symbol | OsATL6 | ||||||||||
| DNA seq | TTCAGACCTACCAGAGGATTTCAGCCAAAGCGCAGGTACATTGTAATGACAATGTTGGTTTATTTTGCTTTGTAATCTGAGTATGTGCTAATTAAGTTATCTACCCTACTGTCAATCGAAGAATATGCTGTTTTCCTGTATGGCTGGCTGATCTTTGCAATGGCATTCATCTAGTGTCTGCAGGTTGAGCAGCCATTGGCCATCTGTACATACATGCTTGGCAGGAAAATTTGCATTTGCTAGCCTTTTGTTTGTTAGTAGCTCTAGTATTCTAATGTGACAGTTTGGATGAGTTCTCTCTCTCCGGAGCAGGTAAGGGGATCTGTCTTCCCTATGCTTGCTTCATTGCTGATTTTCTCCTATGGACAGAATCTGGATTGGATGGCTACCATTGCTGCCTGGGCTGAAGGAACCGTAAAATTTAAGGGACAATATAGATCCTTTTCCTGGAATATTTCCAGTTAATTTGTATCCTAGACAGTAAATAAATGCTTAGTAATTTCAATTTATTCTATATGACGAAACAATTCATCTACCAATCTATAAGCTTATTTGATTGATTGACGTGTGCCGCGGTACATGCATCAATTTCTCAAAAAAAAAAAAAGATTGATTACAGCAACAGTTATCTGAAGCATTTCTCCCTGTGCATGAACTAGCGGCCCTCCTGTTCTTCAAAAATTTTTTACACAGAATTTTTGCCGCTGATTGTTTTCCCAACGCTTCTAAAAAAACAATTTCTCAAAAAAAAAAATCTACTGTATTGTTTGGACCAATTTTTCTACCTACTTGTGAAGTTTATGTTTCAAAATATTAATCAAGTAAACAATACATCTTAATTATCTGCGCAGAAGTCTGTTTTAGCCTGCCACATCTTGCTTAACTTCTCCGGAACCAAGCTGCCAGTTCAACACAATTACACAAGAATGTACATAATCTCAATATTGATGCACATTCAATTGGATTGTTCAAATAGTTGTGCTCTTGTTAAGGCAATTGGGCAATTATATATTTCTGCAAATCAACATAGCATACAGTAGCGCGCAAAAAAAAAAGAGGGTAGCATACAGTGGCTCAAAGTTCTTTGTAACACAAAACAGCAACTCAAGTTTCAATGTGCATTATTGTATATATAAACAACCTTTTCAAGTCATCCACTTAAAATTTTCAGGATGATTGAATAAACATGTATAGAACAAAAAGAAAAATTCTTTTTGGCGGAATAGATACAAACAACCGCAACCATATCACAATTCACAAGTGGCTCTTCTAAATGTTGAACCAGCTTATGTTCAGGAAACTAGACAAATGCAGCAAATCAAATCCTTTCAGGTGTCCAGAATAAAAATCAATGGCTACCACCGAAAATCACATTGCTTTGCTGGGTATTACTAATTTAAACTCACCAAATCATTCTAACTGTACATTCCACTTTGTCGCTCGAAGTATGGAGTTTTAGGCCTCCACTTTCCTGTGAAAGATGATGTTCAGTGCATCGCTGTATAGAGCCACAGAATTTGAGAGCACCGCAAGCACAATCATGGTTAAGGCCAAAATCTTGTCGCGCTTGGTTGCAATTCCATAAGGATCTCTACATGAAAGAGGAAAAACATACAAATTAGATCAGATAGAACCTGAGCGATGTCCAATTATGTATCAACTGAAAATAATACTAGTGGTCACTAGGTTACCTGAGTATGATCATGGCAGGAAAGATAAAACCGATAAGAACAGCAGCTGTGGCACCGGTGAATTGGAACGCGTCCCAGATGCTCGGTATGAAGATGGCAGCAAGATAAATTACAGCAAGGAGTGATCCCGTGATAATGGCGAACCTTCTGTTGTCACGAGAAATGTGCCTTGCAGTAGGGAAGAGCAGTCCATCCAAATTGAGCCTAAGGGCGAAGAAGACTATGGGAAAGACGAGCATGATGTGGACTACATAGCTCACTCTCACAACATCATTGAAGACAGAGCTGAATGGAATATGAAGGTTGGAGTCAAAGTTGGCGAGTACATCAGCCAGGGTACCCTCGCCAAAGAGGAGATATGCAAAGAAGCTTGTCGCAATGTACACACTTGAGCAAAGAGCCAGTGAAGTTTGCACAATTGGCTTGGTTTGAGTTCTATCTTCCAACTCATTGTCGATGCTATGTACTGTATAATCATGAAAAGTTCACATTCAGGCCACACACAAATAAACAACAGCAAGCGTAAACTAAGTGAGCAGTAGGAAACACACCATTGTAGTGGCAAATGTAGGCAGTGACAACAACAGGCACAGCTGTAAAGAGTTCCCAGATGGAATTAGTTCCATCTAACTCGGGAAAGAGTTTGGGAATCTCCACAGTTCCTTCAATGAGTCTGACAATCGCAATTCCAGCAGTGATGACAACAAAAACCACAGCAAGAGCAACTGACAGTGCAGATGTGTATCTCAATGAATCTATAAACCAAAGATGTTTTATTAGTATGAGTTAACCGTAAACAATAGTTAGCACAGTGAACCTCATATTACAATGTGGAATTCACCTACCCAAACGCTTAAAGCTCACCAATGGACCAAACACAAAAAGAGTCGTAGCAAGGAGAACAACCGGACGAGAATTCCACAAATGAGGTCCAAACCACCCCTCGAAGATGCCACGGTGATGAACACCACTTGTTGATGTTCCGGACAGCACATCACCTTAAGAAAGAAAGATGAATGAGTATCTACTAACCATCAACGGTAATAATTTCAGGTGAATTGATAGCCTATTGAACGAGACAACTTACAACCACAACTTATGATACAACAATAATGAGCACAAGTGCAAACCATCTATATTGTCTAGTACAGTGGAGGGAGGCTAATCAAATTACGAGTGAATGCTTACCATACCTTAAAGTATAACAAGACAAAAAAAAAGAAGGAAAAATCAACTCCAAAACAATAACTTAGTCAACAATCAGTATCGATACTTAGAAGAGCCTCAAGCAAATAAATATAAGAAGAGTTAGTTTTAACTTTTAAGCTCTGTAAACAAATATGGGTTTTCTTCACATGTCACATGCCATATGTTCAACACGAGTAATTAAGAGACTCCCTGGCTTCCAAGAATTATTGATTATTCAGAGGAGCAACTAAAAAAAGGAACTAAACATGTACTAGCACTATTCAACAGTATGGTTGTTGTTCAGAAGTAGGATAACAAAAGGGTGTGGTTTTCAGAGGCATACCAACGATAATCATGTAAACGATCATCATGCCAATGTTGTTTATTACAACAGATGCTTGCAGCGCGATCCTCCCCCACTGACCGAAAGTTTCACCCATCAGCCACCCGTAGGACGTAATCTTGCCCTCGTGGCTGCACCTGACCAGCATGTCAATGGATGCCTCAGTGAGCAACGCCACAAGGATGATCATCAGGATACCAGGGATAATTCCCAGCATCTTGATGCTCGCTGGCAGTGCCATAATTCCAGCCCCCACGATGGTCGTTGACAGATTGAACACTGCACCGGAGAAAGAAGCTCCATTGAACTCATGAATCCCCTCCTCCTCTTCCTTAATTGGGAGAAGCGGTGTGGTCTCATCTCGTATTTCCTTGTGTGACACATGCCTGCTGTCACTTGGTGATCCATTCCCAATTCCCATTTGTGTTCGCTATCCTGTATGGGAAAAATCTTCAGTTAGAACAACAGGATCTTTGTTTGGACTCCTATGATCATTAATTGTCTTCGCAAATTTGGGCGGCGTAATTTCAAGTTTATTTGTGGTTCGGAAAAACCCAAAATGTTCATATAAGGTATTCAGGAGCTTTGCATAGTTATAACCACCATATCAATGACAAACTACAGATTAGAAATAAGCTTGCCGCACACCAATCCGAGCTGACACGGATTCTGATTAAAAGTTTGCCAATAAATGATGGCAAAATCACAATAAAGATCAATCTGAGCACTACCCACCGGATAAACCACTTAAAATTCCCCCAGAACCCAACATTTTCCAGCTAAATTCATACAGGATGCCTTGAACGAGATTTCACTACAGCCATCGACAGGAAGAAGCATACATCGAAATTTAGACGAATTCGCCTACTCGGGGGGATTGTTCAGAGTGAGATCACTCAGCCCAACCAATCAAATACCACCTAATCCCAATCCTACAACAAACCAATCTCCACAACCCAAATTTTTAAGCCCTAAAAATGAGAAGGAGAAAGAAACATACCTTACCCCAAACCCCAATCCTTGCTCAATACCGGCGATCAGATAAGATCAAAAGAGAATATCACACCTACAGAAGCTCTCTCTTCCTCCCCCAAACTCCTCTCTTTTTTTATAGGCGAACCAACGCCGGGTGGATCAGCAGAGCAAAAGCCTCTCTCTTCTCTTTCACACCAAACCAACAACTGGAGGAGTTCTTGCCTTCCGGGTCGCCGCGGCTGGGGGTCGCTTTCCGCCCAAAGAAAGAGAGAAAAGGCCAAACTTTCCAATCCAGATTGCGTCCTCCCGGCGCCTTCCTCCCCCTTGGCTCGCCAATCAAAATCGATCTTTTCCTTTGCCTCTCCTCCTCCTGCTTGTGCTCGATTAAATTAAATTAAAGTAAATAAAAGGAAAAGAAATTCCCCGGCGGGCGGCTGATTGCTTCCTTCCGGCCTCGCCTTTCTTTCTTGGTTTGGTCCCTTATCCACAGCAACAAGATGACAAGTTAAAAGAACGGCGATGCGTGTGCGCGGCGACTGGCGGGTGGCGGCGACGGCCACGCGACGACGGCGACGGCGGATTGCGGCGAGAGGGATGGATCTGCCGCTACTCGACAATAGCACAAGTGTGTGTTTGCGGGACTATGAGAGGTGTTTTTTCATCATCGTCTTTGTTGGCAAATCCGTTTTATCCTCTTTTTTTTTTCTTTTTGGGGGCAAATCGTCTTGTTGTCTTGCCATATGTCACACGTGTGCATACTTTATGGATTGGCATTATCTGACTATCCTTCTTTTTTTGTTTTTTTCTGATAAAACTGTTTATCGAATTATTAACGCGGATCTAGAATGATTTGTAATTTTTTTTAAG
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| CDS seq | ATGGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATTCATGAGTTCAATGGAGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTCAGTTGCTCTTGCTGTGGTTTTTGTTGTCATCACTGCTGGAATTGCGATTGTCAGACTCATTGAAGGAACTGTGGAGATTCCCAAACTCTTTCCCGAGTTAGATGGAACTAATTCCATCTGGGAACTCTTTACAGCTGTGCCTGTTGTTGTCACTGCCTACATTTGCCACTACAATGTACATAGCATCGACAATGAGTTGGAAGATAGAACTCAAACCAAGCCAATTGTGCAAACTTCACTGGCTCTTTGCTCAAGTGTGTACATTGCGACAAGCTTCTTTGCATATCTCCTCTTTGGCGAGGGTACCCTGGCTGATGTACTCGCCAACTTTGACTCCAACCTTCATATTCCATTCAGCTCTGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCATAGTCTTCTTCGCCCTTAGGCTCAATTTGGATGGACTGCTCTTCCCTACTGCAAGGCACATTTCTCGTGACAACAGAAGGTTCGCCATTATCACGGGATCACTCCTTGCTGTAATTTATCTTGCTGCCATCTTCATACCGAGCATCTGGGACGCGTTCCAATTCACCGGTGCCACAGCTGCTGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGATCCTTATGGAATTGCAACCAAGCGCGACAAGATTTTGGCCTTAACCATGATTGTGCTTGCGGTGCTCTCAAATTCTGTGGCTCTATACAGCGATGCACTGAACATCATCTTTCACAGGAAAGTGGAGGCCTAA
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| Protein seq | MGIGNGSPSDSRHVSHKEIRDETTPLLPIKEEEEGIHEFNGASFSGAVFNLSTTIVGAGIMALPASIKMLGIIPGILMIILVALLTEASIDMLVRCSHEGKITSYGWLMGETFGQWGRIALQASVVINNIGMMIVYMIIVGDVLSGTSTSGVHHRGIFEGWFGPHLWNSRPVVLLATTLFVFGPLVSFKRLDSLRYTSALSVALAVVFVVITAGIAIVRLIEGTVEIPKLFPELDGTNSIWELFTAVPVVVTAYICHYNVHSIDNELEDRTQTKPIVQTSLALCSSVYIATSFFAYLLFGEGTLADVLANFDSNLHIPFSSVFNDVVRVSYVVHIMLVFPIVFFALRLNLDGLLFPTARHISRDNRRFAIITGSLLAVIYLAAIFIPSIWDAFQFTGATAAVLIGFIFPAMIILRDPYGIATKRDKILALTMIVLAVLSNSVALYSDALNIIFHRKVEA |
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| Function | Amino acid transporter AVT6A [UniProtKB/Swiss-Prot:Q9LI61] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_02G0088300 | OsZS97_02T0088300.1 | Chr02 | 5059828 | 5064891 | - | makerRMon | ||
| CDS seq | ATGGGAATTGGGAATGGATCACCAAGTGACAGCAGGCATGTGTCACACAAGGAAATACGAGATGAGACCACACCGCTTCTCCCAATTAAGGAAGAGGAGGAGGGGATTCATGAGTTCAATGGAGCTTCTTTCTCCGGTGCAGTGTTCAATCTGTCAACGACCATCGTGGGGGCTGGAATTATGGCACTGCCAGCGAGCATCAAGATGCTGGGAATTATCCCTGGTATCCTGATGATCATCCTTGTGGCGTTGCTCACTGAGGCATCCATTGACATGCTGGTCAGGTGCAGCCACGAGGGCAAGATTACGTCCTACGGGTGGCTGATGGGTGAAACTTTCGGTCAGTGGGGGAGGATCGCGCTGCAAGCATCTGTTGTAATAAACAACATTGGCATGATGATCGTTTACATGATTATCGTTGGTGATGTGCTGTCCGGAACATCAACAAGTGGTGTTCATCACCGTGGCATCTTCGAGGGGTGGTTTGGACCTCATTTGTGGAATTCTCGTCCGGTTGTTCTCCTTGCTACGACTCTTTTTGTGTTTGGTCCATTGGTGAGCTTTAAGCGTTTGGATTCATTGAGATACACATCTGCACTGTCAGTTGCTCTTGCTGTGGTTTTTGTTGTCATCACTGCTGGAATTGCGATTGTCAGACTCATTGAAGGAACTGTGGAGATTCCCAAACTCTTTCCCGAGTTAGATGGAACTAATTCCATCTGGGAACTCTTTACAGCTGTGCCTGTTGTTGTCACTGCCTACATTTGCCACTACAATGTACATAGCATCGACAATGAGTTGGAAGATAGAACTCAAACCAAGCCAATTGTGCAAACTTCACTGGCTCTTTGCTCAAGTGTGTACATTGCGACAAGCTTCTTTGCATATCTCCTCTTTGGCGAGGGTACCCTGGCTGATGTACTCGCCAACTTTGACTCCAACCTTCATATTCCATTCAGCTCTGTCTTCAATGATGTTGTGAGAGTGAGCTATGTAGTCCACATCATGCTCGTCTTTCCCATAGTCTTCTTCGCCCTTAGGCTCAATTTGGATGGACTGCTCTTCCCTACTGCAAGGCACATTTCTCGTGACAACAGAAGGTTCGCCATTATCACGGGATCACTCCTTGCTGTAATTTATCTTGCTGCCATCTTCATACCGAGCATCTGGGACGCGTTCCAATTCACCGGTGCCACAGCTGCTGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGATCCTTATGGAATTGCAACCAAGCGCGACAAGATTTTGGCCTTAACCATGATTGTGCTTGCGGTGCTCTCAAATTCTGTGGCTCTATACAGCGATGCACTGAACATCATCTTTCACAGGAAAGTGGAGGCCTAA
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| Protein seq | MGIGNGSPSDSRHVSHKEIRDETTPLLPIKEEEEGIHEFNGASFSGAVFNLSTTIVGAGIMALPASIKMLGIIPGILMIILVALLTEASIDMLVRCSHEGKITSYGWLMGETFGQWGRIALQASVVINNIGMMIVYMIIVGDVLSGTSTSGVHHRGIFEGWFGPHLWNSRPVVLLATTLFVFGPLVSFKRLDSLRYTSALSVALAVVFVVITAGIAIVRLIEGTVEIPKLFPELDGTNSIWELFTAVPVVVTAYICHYNVHSIDNELEDRTQTKPIVQTSLALCSSVYIATSFFAYLLFGEGTLADVLANFDSNLHIPFSSVFNDVVRVSYVVHIMLVFPIVFFALRLNLDGLLFPTARHISRDNRRFAIITGSLLAVIYLAAIFIPSIWDAFQFTGATAAVLIGFIFPAMIILRDPYGIATKRDKILALTMIVLAVLSNSVALYSDALNIIFHRKVEA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.179553 | 19.3007795 | 7.0818025 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0191300 | RBH | 0.528274 | 0.665309 | 1.638302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09810 | RBH | 0.352115 | 0.447814 | 0.461672 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0191300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006900 | RBH | 0.834506 | 50.996151 | 5.186794 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007060 | RBH | 0.198923 | 6.849564 | 3.025871 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006840 | RBH | 2.601702 | 17.457853 | 6.392365 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006780 | RBH | 0.081326 | 0.490180 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006840 | RBH | 0.828335 | 11.347320 | 16.213745 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0085600 | RBH | 4.78055 | 31.4895105 | 37.1957035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006790 | RBH | 0.094442 | 2.209900 | 0.870767 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0384600 | RBH | 128.467899 | 31.5312795 | 57.2183265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0007210 | RBH | 0.111681 | 0.446519 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006800 | RBH | 0.365023 | 12.418087 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0007090 | RBH | 1.868469 | 22.311245 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007100 | RBH | 0.799350 | 1.781615 | 0.982840 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006840 | RBH | 0.304903 | 9.687337 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006950 | RBH | 0.368420 | 0.705896 | 1.716025 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006920 | RBH | 0.476439 | 59.687138 | 3.541265 |
