Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_01G0458600 | OGI:01085620 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr01:29729293-29733775 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | CCTCCCCCCTCCTCCTTATTCCCCAGCCCGACCCGATCTCCAAACCCCTACCACCATTCCCCGCAGCGCGGAGCCGCCGCCACTCCCCCCCACCCTCACCCCGCAGACCATTCGGAAAACCTAGATCCGAGCCTTCCCCCTTCCCCTCCCCGGCGGCGGCGGCCATGGCGACCCGCCGGGCCCTCACCTCCGTCCTCCGCTCCGCCTCCCGCCTCCGCGCCGCCTCCCCTTCCCCGTGCCCGCGCCGCGCGCCGCTCCACCCCCACCGCCGCCCGTCCCCCGCGGGCTTCCTCCTGAACCGCGCCGCCGCCGCCTACGCGTCATCCGCCGCGGCGCAGGCGGCCCCCGCGCCTCCCCCCGCGTCGGGCAAGGCCACCGGGGGCGGCAAGATCACCGATGAGTTCACGGGCGCTGGCGCCGTCGGGCAGGTGTGCCAGGTGATTGGCGCCGTCGTGGACGTGCGGTTCGACGAGGGCCTGCCCCCGATCCTGACCGCGCTGGAGGTGCTCGACCACAACATCCGCCTCGTGCTCGAGGTGGCGCAGCATCTCGGGGAGAACATGGTGCGCACCATCGCCATGGACGGGACCGAGGGGCTCGTTCGCGGCCAGCGCGTGCTCAACACCGGCTCTCCCATCACTGTAATGCCCTCCCCCCTCTTGTTCCTTGTCCATCACTATGTTTGGAACTGTTTATTTGGATCTAGTCTGACGAAATGACGGACCAGTAGTCGGTAGATTTGATCTAGATGTACGGATCCGTGTATTGATTAGGGCAGGCTCACCTTACAGATCCGCGACTATAGTTTGTTAATGAATCCATGCACTGATTTAGTGCGGATTCACATATCAAATGCCAAATGGCGAGGCCACAAATGGAATTTGACTCTTACGAACATAATTATGCAATACATTTTCTATGTTCAAATGCTGCCCCGTAGATTCATTTTTCCAGTCCAGTCATGCCATCTGGAGATGGAGAAAACATTTACCGTTGGATAATTTGGTAAAGGTACTGAATGCCCTTATGGGCCTTTTCCTTTTCGTCTCTATGGTCCCAGAATCACACAAATCAAGGAGGGGCCTTTTGTCTTTTGGGTGTAGGGGCTTTATGAAGGGAGGGTTGAGAGAAAATGCATGTGACCCAATGTAGGTTCCCAATCTCAAAATGTGCTATGGGATAACGGGAAGTCCAAAAATGTTTCTTTTAAAATAAAGTTAAAGTTATCATGTGAAGTTAAAAGTTATATTTGTTTTCCTGAGAAACTTAGGAAGCTTAAGATTAGGTGATGGGGGTTGACCCTTTTTTTTTTTTTTGCTTACAGATATTGTGGTTTGCTGATTATAAGTTCTGTCACTCTGTGCGGCTTATAATGTGTGTCAAACTAAAGATCATTTGTTATTTACCTGTGACAAAAGGCTATATATATTGTCCTTGAACTTTGATGTTGTAATGTCAGTATAACCATCTTTGATCTAAACCATGTTCTTTATATTTCTTTGTTTTGTCTGTTTTAGGTTCCTGTTGGTAGGGCCACACTTGGGCGTATTATGAATGTCATCGGTGAGCCTATTGATGAGAAGGGAGATATCAGTAAGTCTAAATGATATCCATTTGTATATTGTAGGTGTATGCATACATACTATATTTTCTTCCTTATGATCTTTAGTTATTGATTACCTTTCTTTGCCACAGCAACAAACCACTTCCTCCCTATCCATCGTGAAGCCCCTGCTTTTGTTGAGCAAGCTACAGAGCAACAGATTCTTGTTACTGGAATTAAGGTACACTAATTTCTGTCTCTTCTGAAATGATTTTCTTAAACCCTGTGTCTTTTTAAATTTCCTAGTTGGTTAGGTTTCTTAATTGTCAAGAGGCGTTCCTTTTTGTACCATTTTGTCTTACACAAGGATTGCACATTTATCAGGTCGTGGATCTCCTTGCACCCTATCAAAGAGGTGGTAAAATTGGTCTCTTCGGTGGTGCTGGGGTGGGCAAAACTGTACTTATTATGGAGTTGATCAACAATGTTGCGAAGGCTCATGGTTTGCTTTCTACAGAGCTTGATGGTCATATCCAAAGTCTTGTGCTGTGCATTGCCTTATCTGGTTGACCTGTTTATTTTAGGTGGTTTCTCTGTCTTTGCTGGTGTTGGAGAACGTACTCGTGAGGGTAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTGATTAAGCTTGGTGACAAGCAGGTAAATAAGTCACATTTCAAATATGATATCAGTATATATTTTCTCTTTAATGAAATTTCTCCTTACAAGGTAGTATTTTCCTTTGGCAGAGTGAGAGCAAGTGTGCTCTTGTCTACGGGCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGACTGACTGGTTTGACTGTTGCCGAGCATTTCCGTGATGCTGAAGGGCAGGATGTGCTTCTCTTCATTGATAACATTTTCCGTTTCACTCAGGTAAGTTTTGTGAGACCCTTATGCCATCTCATTCTGGCAATTCTAGCAATGGTATTCATGGTAGTTGATGCACACATTATTTTTTGTTATGTGCATTATTATTACACCTGACAAAGCTGTTCATTTGATTATTCTGTATTAGGCAAACTCCGAGGTGTCTGCCCTGCTTGGACGTATCCCATCTGCTGTGGGATACCAGCCAACCCTTGCTACTGATCTTGGAGGACTGCAGGAGCGGATTACCACCACAAAGAAGGGTTCTATCACATCTGTTCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCCCCTGCTACTACATTTGCCCATCTTGATGCTACTACTGTGTTGTCACGACAGGTATGCCTACCTAATCTTTTTACAATTTGAAATATTAATATCTTTCCTATCATAAATGGATTTATTTGTACTGGATATGCAGATTTCTGAGCTTGGTATTTATCCTGCTGTCGATCCTTTGGATTCCACATCCAGAATGTTGTCTCCCCATGTACTGGGTGAGGACCACTACAACACAGCTCGTGGTGTTCAGAAGGTTCTTCAGAATTACAAGAATCTTCAAGATATTATTGCCATTCTGGGAATGGACGAGCTCAGTGAGGATGATAAGTTGACAGTCGCTCGTGCTAGGAAGATTCAGCGGTTCCTTAGCCAGCCCTTCCACGTTGCCGAAGTTTTCACGGGTGCACCTGGAAAGTATGTTGAGCTGAAGGAGAGCGTTCAAAGTTTCCAGGTATGTATTTTGACTGTTGTTATTTATTCCCCTTTGGAACAACATTTCCACAGTAGAGTTTTTGGCTGCAAGTTACAATGTTTAGGCTATCGTGATTATTTAGATACAAGAAGAGAGCAGGGTTTTAGTATTTAAGTTGGAACTTGGAGATCATGTGACAAGAACTGTGGTTCATGAGATGAACTCATCTGTTATGGTCATAGAACATAAATTAAAACCTGATGTGGCATAAAAATCAATTTACCTGCTATTTAGCTATGCTAACTTGACAATATTTGTCAAGCCCTGTATCATCTTCCTTTTCCTAAGTCAATGGTTACGTGGCTACAATATAGTACTCCGCAAGGCAGCAGCATATTGTTGCAGTGTAACAAGTAATAGAAAGTAGAAGTGCTAACATTACTCTTGTGAACTCGTGTCAAACATTACCAGTACATCTGGCCATTTTCTTATTAGTGAAGAGATATAGTTTTTATGACAGCCAAAAATGCGTCTAAAAAGCAATATGTTTTGTTATCCTTGTTTCTCATGGTGCATTATCTTTGTCCTCGGGGGTCTTACAAAATCATCACTCCAATGTCTACTCTTTTTTTCCACCAGTCATATGATCATGACTCTTATCTTGTGCTGTCTGCATTTCTACCGAGTAATGAATTTTCTCAACATGTCACAGGGTGTATTGGACGGGAAGTATGATGACCTTCCTGAGCAGTCATTCTACATGGTTGGAGGAATCGATGAGGTCATTGCCAAGGCAGAGAAGATTGCCAAGGAGTCCGCTTCATAAGCGATGCAATTTTTAACATTTGGAGGTCAACATGTTGTGCCTTTTATGTTTGTTAGCCAGGACATGTACTTACATGCAGGAGGCCCGGCCCTGCTGATCGATGTTTTTCCCCTCCACTTTTTTCCAAATAAGGATTTGCAGTGACCTATTTGTTTGGCTTACTGCCCTTCAAGGAAGAATTGAGTTCTCTTTTTGTGTGATGTGCGGCCAGTCCGGCAGTCCGTGAACTTGTTACTTGCTGAAAACACTGAAATATTGGTCTCCCATACAGCACCTCTGTGAAAACTCCTCATTTATACTTCCAACATGTTTTGAGAGCCGATATAAGCTGTGTTTCGATTCAAAATTTTTTCTTCAAACCTTCCATTTTTCTGTCACATTAAATGTTTGGACATGTATGGAGCATTAAATGTTGACGAAAAAATAATTGCATAGTTTGCATGTAAATCGCGAGAC
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| CDS seq | ATGGCGACCCGCCGGGCCCTCACCTCCGTCCTCCGCTCCGCCTCCCGCCTCCGCGCCGCCTCCCCTTCCCCGTGCCCGCGCCGCGCGCCGCTCCACCCCCACCGCCGCCCGTCCCCCGCGGGCTTCCTCCTGAACCGCGCCGCCGCCGCCTACGCGTCATCCGCCGCGGCGCAGGCGGCCCCCGCGCCTCCCCCCGCGTCGGGCAAGGCCACCGGGGGCGGCAAGATCACCGATGAGTTCACGGGCGCTGGCGCCGTCGGGCAGGTGTGCCAGGTGATTGGCGCCGTCGTGGACGTGCGGTTCGACGAGGGCCTGCCCCCGATCCTGACCGCGCTGGAGGTGCTCGACCACAACATCCGCCTCGTGCTCGAGGTGGCGCAGCATCTCGGGGAGAACATGGTGCGCACCATCGCCATGGACGGGACCGAGGGGCTCGTTCGCGGCCAGCGCGTGCTCAACACCGGCTCTCCCATCACTGTTCCTGTTGGTAGGGCCACACTTGGGCGTATTATGAATGTCATCGGTGAGCCTATTGATGAGAAGGGAGATATCACAACAAACCACTTCCTCCCTATCCATCGTGAAGCCCCTGCTTTTGTTGAGCAAGCTACAGAGCAACAGATTCTTGTTACTGGAATTAAGGTCGTGGATCTCCTTGCACCCTATCAAAGAGGTGGTAAAATTGGTCTCTTCGGTGGTGCTGGGGTGGGCAAAACTGTACTTATTATGGAGTTGATCAACAATGTTGCGAAGGCTCATGGTGGTTTCTCTGTCTTTGCTGGTGTTGGAGAACGTACTCGTGAGGGTAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTGATTAAGCTTGGTGACAAGCAGAGTGAGAGCAAGTGTGCTCTTGTCTACGGGCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGACTGACTGGTTTGACTGTTGCCGAGCATTTCCGTGATGCTGAAGGGCAGGATGTGCTTCTCTTCATTGATAACATTTTCCGTTTCACTCAGGCAAACTCCGAGGTGTCTGCCCTGCTTGGACGTATCCCATCTGCTGTGGGATACCAGCCAACCCTTGCTACTGATCTTGGAGGACTGCAGGAGCGGATTACCACCACAAAGAAGGGTTCTATCACATCTGTTCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCCCCTGCTACTACATTTGCCCATCTTGATGCTACTACTGTGTTGTCACGACAGATTTCTGAGCTTGGTATTTATCCTGCTGTCGATCCTTTGGATTCCACATCCAGAATGTTGTCTCCCCATGTACTGGGTGAGGACCACTACAACACAGCTCGTGGTGTTCAGAAGGTTCTTCAGAATTACAAGAATCTTCAAGATATTATTGCCATTCTGGGAATGGACGAGCTCAGTGAGGATGATAAGTTGACAGTCGCTCGTGCTAGGAAGATTCAGCGGTTCCTTAGCCAGCCCTTCCACGTTGCCGAAGTTTTCACGGGTGCACCTGGAAAGTATGTTGAGCTGAAGGAGAGCGTTCAAAGTTTCCAGGGTGTATTGGACGGGAAGTATGATGACCTTCCTGAGCAGTCATTCTACATGGTTGGAGGAATCGATGAGGTCATTGCCAAGGCAGAGAAGATTGCCAAGGAGTCCGCTTCATAA
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| Protein seq | MATRRALTSVLRSASRLRAASPSPCPRRAPLHPHRRPSPAGFLLNRAAAAYASSAAAQAAPAPPPASGKATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVQSFQGVLDGKYDDLPEQSFYMVGGIDEVIAKAEKIAKESAS |
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| Function | ATP synthase subunit beta, mitochondrial [UniProtKB/Swiss-Prot:Q01859] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0458600 | OsZS97_01T0458600.1 | Chr01 | 29729293 | 29733775 | + | makerRMon | ||
| CDS seq | ATGGCGACCCGCCGGGCCCTCACCTCCGTCCTCCGCTCCGCCTCCCGCCTCCGCGCCGCCTCCCCTTCCCCGTGCCCGCGCCGCGCGCCGCTCCACCCCCACCGCCGCCCGTCCCCCGCGGGCTTCCTCCTGAACCGCGCCGCCGCCGCCTACGCGTCATCCGCCGCGGCGCAGGCGGCCCCCGCGCCTCCCCCCGCGTCGGGCAAGGCCACCGGGGGCGGCAAGATCACCGATGAGTTCACGGGCGCTGGCGCCGTCGGGCAGGTGTGCCAGGTGATTGGCGCCGTCGTGGACGTGCGGTTCGACGAGGGCCTGCCCCCGATCCTGACCGCGCTGGAGGTGCTCGACCACAACATCCGCCTCGTGCTCGAGGTGGCGCAGCATCTCGGGGAGAACATGGTGCGCACCATCGCCATGGACGGGACCGAGGGGCTCGTTCGCGGCCAGCGCGTGCTCAACACCGGCTCTCCCATCACTGTTCCTGTTGGTAGGGCCACACTTGGGCGTATTATGAATGTCATCGGTGAGCCTATTGATGAGAAGGGAGATATCACAACAAACCACTTCCTCCCTATCCATCGTGAAGCCCCTGCTTTTGTTGAGCAAGCTACAGAGCAACAGATTCTTGTTACTGGAATTAAGGTCGTGGATCTCCTTGCACCCTATCAAAGAGGTGGTAAAATTGGTCTCTTCGGTGGTGCTGGGGTGGGCAAAACTGTACTTATTATGGAGTTGATCAACAATGTTGCGAAGGCTCATGGTGGTTTCTCTGTCTTTGCTGGTGTTGGAGAACGTACTCGTGAGGGTAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTGATTAAGCTTGGTGACAAGCAGAGTGAGAGCAAGTGTGCTCTTGTCTACGGGCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGACTGACTGGTTTGACTGTTGCCGAGCATTTCCGTGATGCTGAAGGGCAGGATGTGCTTCTCTTCATTGATAACATTTTCCGTTTCACTCAGGCAAACTCCGAGGTGTCTGCCCTGCTTGGACGTATCCCATCTGCTGTGGGATACCAGCCAACCCTTGCTACTGATCTTGGAGGACTGCAGGAGCGGATTACCACCACAAAGAAGGGTTCTATCACATCTGTTCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCCCCTGCTACTACATTTGCCCATCTTGATGCTACTACTGTGTTGTCACGACAGATTTCTGAGCTTGGTATTTATCCTGCTGTCGATCCTTTGGATTCCACATCCAGAATGTTGTCTCCCCATGTACTGGGTGAGGACCACTACAACACAGCTCGTGGTGTTCAGAAGGTTCTTCAGAATTACAAGAATCTTCAAGATATTATTGCCATTCTGGGAATGGACGAGCTCAGTGAGGATGATAAGTTGACAGTCGCTCGTGCTAGGAAGATTCAGCGGTTCCTTAGCCAGCCCTTCCACGTTGCCGAAGTTTTCACGGGTGCACCTGGAAAGTATGTTGAGCTGAAGGAGAGCGTTCAAAGTTTCCAGGGTGTATTGGACGGGAAGTATGATGACCTTCCTGAGCAGTCATTCTACATGGTTGGAGGAATCGATGAGGTCATTGCCAAGGCAGAGAAGATTGCCAAGGAGTCCGCTTCATAA
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| Protein seq | MATRRALTSVLRSASRLRAASPSPCPRRAPLHPHRRPSPAGFLLNRAAAAYASSAAAQAAPAPPPASGKATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVQSFQGVLDGKYDDLPEQSFYMVGGIDEVIAKAEKIAKESAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 63.6604405 | 70.282692 | 100.425442 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0685800 | RBH | 13.888079 | 14.160533 | 82.462624 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49190 | RBH | 7.579849 | 7.609944 | 17.037460 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0685800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029470 | RBH | 3.429492 | 228.560165 | 75.598450 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029060 | RBH | 1.690834 | 66.264549 | 51.273251 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029450 | RBH | 4.820353 | 258.773254 | 100.463524 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028670 | RBH | 0.727489 | 10.486649 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028360 | RBH | 32.971130 | 348.798492 | 283.181335 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0469600 | RBH | 67.087242 | 118.329643 | 111.8027685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028100 | RBH | 1.393040 | 18.758598 | 21.697567 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0438300 | RBH | 25.196882 | 23.600981 | 44.732086 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028390 | RBH | 1.371496 | 2.039833 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028260 | RBH | 3.153829 | 212.338226 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028560 | RBH | 19.349724 | 240.978226 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028720 | RBH | 2.369555 | 19.992865 | 18.965485 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028500 | RBH | 1.366585 | 123.459480 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028960 | RBH | 1.473054 | 101.326370 | 42.632771 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028630 | RBH | 7.678933 | 157.418457 | 116.149055 |
