Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_01G0419500 | OGI:01078990 | 2/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr01:27178798-27179019 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACAGCAAACCCGGTCCACCACCGCCGTACCAAGCACATTGAGATCGACATCCATTTCGTCCGCGAAAAGGTGGCTCTCGGCGAGGTTCGCGTTCTCCATGTGCCGTCCAAGTATCAGTTCGCCGATATCATGACAAAGGGGCTGCCGATTCAGCTCTTTGAAGATTTTCGGTCCAGTCTGTGCATTCGGCATCCTGACGCTTCGACTGAGGGGGGCTGA |
||||||||||
| CDS seq | ATGACAGCAAACCCGGTCCACCACCGCCGTACCAAGCACATTGAGATCGACATCCATTTCGTCCGCGAAAAGGTGGCTCTCGGCGAGGTTCGCGTTCTCCATGTGCCGTCCAAGTATCAGTTCGCCGATATCATGACAAAGGGGCTGCCGATTCAGCTCTTTGAAGATTTTCGGTCCAGTCTGTGCATTCGGCATCCTGACGCTTCGACTGAGGGGGGCTGA |
||||||||||
| Protein seq | MTANPVHHRRTKHIEIDIHFVREKVALGEVRVLHVPSKYQFADIMTKGLPIQLFEDFRSSLCIRHPDASTEGG |
||||||||||
| Function | Retrovirus-related Pol polyprotein from transposon RE1 [UniProtKB/Swiss-Prot:Q94HW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0419500 | OsZS97_01T0419500.1 | Chr01 | 27178798 | 27179019 | + | makerRMon | ||
| CDS seq | ATGACAGCAAACCCGGTCCACCACCGCCGTACCAAGCACATTGAGATCGACATCCATTTCGTCCGCGAAAAGGTGGCTCTCGGCGAGGTTCGCGTTCTCCATGTGCCGTCCAAGTATCAGTTCGCCGATATCATGACAAAGGGGCTGCCGATTCAGCTCTTTGAAGATTTTCGGTCCAGTCTGTGCATTCGGCATCCTGACGCTTCGACTGAGGGGGGCTGA
More
|
|||||||
| Protein seq | MTANPVHHRRTKHIEIDIHFVREKVALGEVRVLHVPSKYQFADIMTKGLPIQLFEDFRSSLCIRHPDASTEGG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.150788 | 2.687154 | 0.0583735 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g53170 | SBH | 0.0 | 0.0 | 0.150849 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0430100 | RBH | 0.22206 | 1.7563555 | 1.0851075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0019100 | SBH | 0.012051 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
