Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_01G0127300 | OGI:01011440 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr01:7758168-7760960 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACTGCACCCTATTTTCCATGCAATGTGTTATCAATGCTGTTTTATCAATGCTGCAATGTGTATATAGCACATCTTCTAAGCTATTCAGTGCACCCTATTTTCCTTCCATACATCTGTTTTCTGTTTTTTTTGTATCCTTCCATTGCTCACTGCACAATAAATGTACAATTCGAACTGCACAGCAATGGCAGCCGCAATAAACAGCAATTCGTGATTCGCTGTAACTTAAGCAAAACAGACTTAAATCACATAACAGACACAAGAGCAGCATTTCAATCCCAAAATACAAGTCAAACACAAGAGCATATCATTCTACAACGCACAGCAATGCCAATACAGACTGAACATCAATAATAAAAGCAAGTTGCATACTGCCAGTACGTCTCACATTAAGTTCTTAATACATATATTCATCAATGCCATACACCACAAATATTCATCAAGTTCCACCCCATGTTGCTTCATCTCAGAACATAAACAAACTAACAAAAAATACATGTTCCTTTCCTGTCTTATTCAACGATGCAATTTGACGGCCAACTCCATCGTTCTCACACATCAACACGTACTTTCCTGAAAAAAAATTGTGAACCAATTAAATACGCAGGTATTTTTTCCAATTGAACTAGCTTGACTTGTCACATATAAATTACCTCTCGTAAATTGGACACGAACGAATGGTATGGCCACCGTTACGGCAATAGCCACAACGCCTAACACGCTTCTCCAAAAAACCTCTCAATCTTTTTCGCTGTGCTCCCTTCGGAACTACCTCCATGGGATCATGTACCAAAACATGGCCACTAATGTCTGTACGTAAACTTTGACCTACCACGTGACCACACAGTGTCCTCTCTATTTCGTTACCATCACAATCTTCAGTTTCTAAATCCAACTTTTCTAGCATCTCCATCACCTTCAATGTACATTCCTCAGATATGGAGCACTTCATTAGTACTTCGCTACCGAAGCTACGCAACATGCGATACCTTTCCATTTGGTCCGACCATGAAAATGTCTCACCATATCTATCCGACGGAAAGACACTTTTGGCTTTCACAGTCCACCTGCGAACTATGCAACTTTCAGGAATGGCATCCATCTTCAAATAAAACAGAACTGCAAACATGTGCTGACATGGAAGGCTTTCACAATCAAGTTTCATGCAAGGGCAACTCATTGTCTTCAAAAATGATTCCTCATAAGTACAGTTCAAAATCTTCAGCTTCTCATTGTTCTCTTTCAAGCACATGACATACTTCACTACTGTATCCTCATCAATAAAATCTATTACTTCCCAATCCATGGATTTAATAATCTCAAACTTAACCTTCTTGAAAATTGCAGGTGTATATATGCGCGCTACTTCTTTCTCAATTAAACTTGCATCTGTACACGTGAAGGGGACTGATTGTGAAGCTTTTGAATCTAGCTCAGCCTCCCTATGTCTTATACGCGACACGCAATGTTCGTAATGCTCAACCAATACAACTAAACTCATTGTACGATCCAAATGCTTATGAAGTTTTGAATTCAAACTTTCACTACGCTGGTTGCTTTTCATTCCTAGAAAGTACTTACCTTTTAAATAAGCAGCAGCCCATTTCTTCCTTAAGTTGTACATTCTAACCAACCATTGATTATCTTCACCCACTTTATGTTTGTCCTTGAACTCAACCCACTTATTCTCAAACTCTTCCGGACCATAAGTAGAATGGATAAGTGCCCTGAAATCAGCCAACATTTCAGGCCGGAGATGTCTTGCCATATTCTGTTCTATATGCCAAGTGCACAACCTATGCTCAGAATGTGGCATCACAGATGAAATTGCCCTACGCATAGAATTGTCTCCATCCGTTATCAAACCTCTGGGATGTTTCTGACCCATGCAATCCAAAAACTGCTTCAGAATCCACTCATAAGATGCAACCTTCTCATCAGCCACAATAGCACACGCAAAAATGACAGTCGAACCATGGTGATTCACACCAACGAATGGGATGAAAGGCAAGTTATATTTGTTTACCCGATATGTGCTATCAAAAACAACTACATCACCAAACGCATCATAATCTATACGAGATTGAGGGTCTGCCCAGAATAACCTTTTCAATCGACCAGCCTCATCGGTCTCATACTCAAAAAAGTACTCCATGTCATCTTTTTGCCTAGCTTGCATGTATTTTATAACATGATCTGCATCTCCACCTAATATCTGTTTCTTCTTCTGTCTTACAAAAAAATTATAAAGGTCCCTACTCACAAAACCAGTAGACTCAAAACCACCATGACGCCTCTCCATGACATCCATCACTTGGTGCTGACGCAAACCAACTTCTCTCAACTCCACAACATTTGCCTTCTGAGCAATGCTAATATTTCGGTGAGAACGAAGGAAAGGAACTTCATCAGATTTAGCCAAACTATGACTGTGCTTCGCCACAAACTTCACTGCAAACCAATCACCCTGTTTCTTGTCAAGTCTAATCTCAAATATAGCTTTGCATCCACAACGAGTTAGTGCTCTAGGTTCTCTGCTTTTGTTACCAATATCCATATAAACATCTCTCCTATACCCTTCTCTTGAGCAAGTGTACTGCCTAAATATAACATCAGCAGTCACAGGATCACGCCTAGCAAAATTTTTCCTTATACTAAATCCTTTCCCTTTCGCATACCTGTTATAGAACGTGAACCCGTCGTTCTCGCTCTTAAACCTCATTGCCATGAACGTAGCATACTCCTCTTCCTCCTCTAAGCTACTGAAATTGTCTGCCATCTCATCAACCAT
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| CDS seq | ATGGTTGATGAGATGGCAGACAATTTCAGTAGCTTAGAGGAGGAAGAGGAGTATGCTACGTTCATGGCAATGAGGTTTAAGAGCGAGAACGACGGGTTCACGTTCTATAACAGGTATGCGAAAGGGAAAGGATTTAGTATAAGGAAAAATTTTGCTAGGCGTGATCCTGTGACTGCTGATGTTATATTTAGGCAGTACACTTGCTCAAGAGAAGGGTATAGGAGAGATGTTTATATGGATATTGGTAACAAAAGCAGAGAACCTAGAGCACTAACTCGTTGTGGATGCAAAGCTATATTTGAGATTAGACTTGACAAGAAACAGGGTGATTGGTTTGCAGTGAAGTTTGTGGCGAAGCACAGTCATAGTTTGGCTAAATCTGATGAAGTTCCTTTCCTTCGTTCTCACCGAAATATTAGCATTGCTCAGAAGGCAAATGTTGTGGAGTTGAGAGAAGTTGGTTTGCGTCAGCACCAAGTGATGGATGTCATGGAGAGGCGTCATGGTGGTTTTGAGTCTACTGGTTTTGTGAGTAGGGACCTTTATAATTTTTTTGTAAGACAGAAGAAGAAACAGATATTAGGTGGAGATGCAGATCATGTTATAAAATACATGCAAGCTAGGCAAAAAGATGACATGGAGTACTTTTTTGAGTATGAGACCGATGAGGCTGGTCGATTGAAAAGGTTATTCTGGGCAGACCCTCAATCTCGTATAGATTATGATGCGTTTGGTGATGTAGTTGTTTTTGATAGCACATATCGGGTAAACAAATATAACTTGCCTTTCATCCCATTCGTTGGTGTGAATCACCATGGTTCGACTGTCATTTTTGCGTGTGCTATTGTGGCTGATGAGAAGGTTGCATCTTATGAGTGGATTCTGAAGCAGTTTTTGGATTGCATGGGTCAGAAACATCCCAGAGGTTTGATAACGGATGGAGACAATTCTATGCGTAGGGCAATTTCATCTGTGATGCCACATTCTGAGCATAGGTTGTGCACTTGGCATATAGAACAGAATATGGCAAGACATCTCCGGCCTGAAATGTTGGCTGATTTCAGGGCACTTATCCATTCTACTTATGGTCCGGAAGAGTTTGAGAATAAGTGGGTTGAGTTCAAGGACAAACATAAAGTGGGTGAAGATAATCAATGGTTGGTTAGAATGTACAACTTAAGGAAGAAATGGGCTGCTGCTTATTTAAAAGGTAAGTACTTTCTAGGAATGAAAAGCAACCAGCGTAGTGAAAGTTTGAATTCAAAACTTCATAAGCATTTGGATCGTACAATGAGTTTAGTTGTATTGGTTGAGCATTACGAACATTGCGTGTCGCGTATAAGACATAGGGAGGCTGAGCTAGATTCAAAAGCTTCACAATCAGTCCCCTTCACGTGTACAGATGCAAGTTTAATTGAGAAAGAAGTAGCGCGCATATATACACCTGCAATTTTCAAGAAGGTTAAGTTTGAGATTATTAAATCCATGGATTGGGAAGTAATAGATTTTATTGATGAGGATACAGTAGTGAAGTATGTCATGTGCTTGAAAGAGAACAATGAGAAGCTGAAGATTTTGAACTGTACTTATGAGGAATCATTTTTGAAGACAATGAGTTGCCCTTGCATGAAACTTGATTGTGAAAGCCTTCCATGTCAGCACATGTTTGCAGTTCTGTTTTATTTGAAGATGGATGCCATTCCTGAAAGTTGCATAGTTCGCAGGTGGACTGTGAAAGCCAAAAGTGTCTTTCCGTCGGATAGATATGGTGAGACATTTTCATGGTCGGACCAAATGGAAAGGTATCGCATGTTGCGTAGCTTCGGTAGCGAAGTACTAATGAAGTGCTCCATATCTGAGGAATGTACATTGAAGGTGATGGAGATGCTAGAAAAGTTGGATTTAGAAACTGAAGATTGTGATGGTAACGAAATAGAGAGGACACTGTGTGGTCACGTGGTAGGTCAAAGTTTACGTACAGACATTAGTGGCCATGTTTTGGTACATGATCCCATGGAGGTAGTTCCGAAGGGAGCACAGCGAAAAAGATTGAGAGGTTTTTTGGAGAAGCGTGTTAGGCGTTGTGGCTATTGCCGTAACGGTGGCCATACCATTCGTTCGTGTCCAATTTACGAGAGCATTGATAAAACAGCATTGATAACACATTGCATGGAAAATAGGGTGCAGTGA
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| Protein seq | MVDEMADNFSSLEEEEEYATFMAMRFKSENDGFTFYNRYAKGKGFSIRKNFARRDPVTADVIFRQYTCSREGYRRDVYMDIGNKSREPRALTRCGCKAIFEIRLDKKQGDWFAVKFVAKHSHSLAKSDEVPFLRSHRNISIAQKANVVELREVGLRQHQVMDVMERRHGGFESTGFVSRDLYNFFVRQKKKQILGGDADHVIKYMQARQKDDMEYFFEYETDEAGRLKRLFWADPQSRIDYDAFGDVVVFDSTYRVNKYNLPFIPFVGVNHHGSTVIFACAIVADEKVASYEWILKQFLDCMGQKHPRGLITDGDNSMRRAISSVMPHSEHRLCTWHIEQNMARHLRPEMLADFRALIHSTYGPEEFENKWVEFKDKHKVGEDNQWLVRMYNLRKKWAAAYLKGKYFLGMKSNQRSESLNSKLHKHLDRTMSLVVLVEHYEHCVSRIRHREAELDSKASQSVPFTCTDASLIEKEVARIYTPAIFKKVKFEIIKSMDWEVIDFIDEDTVVKYVMCLKENNEKLKILNCTYEESFLKTMSCPCMKLDCESLPCQHMFAVLFYLKMDAIPESCIVRRWTVKAKSVFPSDRYGETFSWSDQMERYRMLRSFGSEVLMKCSISEECTLKVMEMLEKLDLETEDCDGNEIERTLCGHVVGQSLRTDISGHVLVHDPMEVVPKGAQRKRLRGFLEKRVRRCGYCRNGGHTIRSCPIYESIDKTALITHCMENRVQ |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0127300 | OsZS97_01T0127300.1 | Chr01 | 7758168 | 7760960 | - | makerRMon | ||
| CDS seq | ATGGTTGATGAGATGGCAGACAATTTCAGTAGCTTAGAGGAGGAAGAGGAGTATGCTACGTTCATGGCAATGAGGTTTAAGAGCGAGAACGACGGGTTCACGTTCTATAACAGGTATGCGAAAGGGAAAGGATTTAGTATAAGGAAAAATTTTGCTAGGCGTGATCCTGTGACTGCTGATGTTATATTTAGGCAGTACACTTGCTCAAGAGAAGGGTATAGGAGAGATGTTTATATGGATATTGGTAACAAAAGCAGAGAACCTAGAGCACTAACTCGTTGTGGATGCAAAGCTATATTTGAGATTAGACTTGACAAGAAACAGGGTGATTGGTTTGCAGTGAAGTTTGTGGCGAAGCACAGTCATAGTTTGGCTAAATCTGATGAAGTTCCTTTCCTTCGTTCTCACCGAAATATTAGCATTGCTCAGAAGGCAAATGTTGTGGAGTTGAGAGAAGTTGGTTTGCGTCAGCACCAAGTGATGGATGTCATGGAGAGGCGTCATGGTGGTTTTGAGTCTACTGGTTTTGTGAGTAGGGACCTTTATAATTTTTTTGTAAGACAGAAGAAGAAACAGATATTAGGTGGAGATGCAGATCATGTTATAAAATACATGCAAGCTAGGCAAAAAGATGACATGGAGTACTTTTTTGAGTATGAGACCGATGAGGCTGGTCGATTGAAAAGGTTATTCTGGGCAGACCCTCAATCTCGTATAGATTATGATGCGTTTGGTGATGTAGTTGTTTTTGATAGCACATATCGGGTAAACAAATATAACTTGCCTTTCATCCCATTCGTTGGTGTGAATCACCATGGTTCGACTGTCATTTTTGCGTGTGCTATTGTGGCTGATGAGAAGGTTGCATCTTATGAGTGGATTCTGAAGCAGTTTTTGGATTGCATGGGTCAGAAACATCCCAGAGGTTTGATAACGGATGGAGACAATTCTATGCGTAGGGCAATTTCATCTGTGATGCCACATTCTGAGCATAGGTTGTGCACTTGGCATATAGAACAGAATATGGCAAGACATCTCCGGCCTGAAATGTTGGCTGATTTCAGGGCACTTATCCATTCTACTTATGGTCCGGAAGAGTTTGAGAATAAGTGGGTTGAGTTCAAGGACAAACATAAAGTGGGTGAAGATAATCAATGGTTGGTTAGAATGTACAACTTAAGGAAGAAATGGGCTGCTGCTTATTTAAAAGGTAAGTACTTTCTAGGAATGAAAAGCAACCAGCGTAGTGAAAGTTTGAATTCAAAACTTCATAAGCATTTGGATCGTACAATGAGTTTAGTTGTATTGGTTGAGCATTACGAACATTGCGTGTCGCGTATAAGACATAGGGAGGCTGAGCTAGATTCAAAAGCTTCACAATCAGTCCCCTTCACGTGTACAGATGCAAGTTTAATTGAGAAAGAAGTAGCGCGCATATATACACCTGCAATTTTCAAGAAGGTTAAGTTTGAGATTATTAAATCCATGGATTGGGAAGTAATAGATTTTATTGATGAGGATACAGTAGTGAAGTATGTCATGTGCTTGAAAGAGAACAATGAGAAGCTGAAGATTTTGAACTGTACTTATGAGGAATCATTTTTGAAGACAATGAGTTGCCCTTGCATGAAACTTGATTGTGAAAGCCTTCCATGTCAGCACATGTTTGCAGTTCTGTTTTATTTGAAGATGGATGCCATTCCTGAAAGTTGCATAGTTCGCAGGTGGACTGTGAAAGCCAAAAGTGTCTTTCCGTCGGATAGATATGGTGAGACATTTTCATGGTCGGACCAAATGGAAAGGTATCGCATGTTGCGTAGCTTCGGTAGCGAAGTACTAATGAAGTGCTCCATATCTGAGGAATGTACATTGAAGGTGATGGAGATGCTAGAAAAGTTGGATTTAGAAACTGAAGATTGTGATGGTAACGAAATAGAGAGGACACTGTGTGGTCACGTGGTAGGTCAAAGTTTACGTACAGACATTAGTGGCCATGTTTTGGTACATGATCCCATGGAGGTAGTTCCGAAGGGAGCACAGCGAAAAAGATTGAGAGGTTTTTTGGAGAAGCGTGTTAGGCGTTGTGGCTATTGCCGTAACGGTGGCCATACCATTCGTTCGTGTCCAATTTACGAGAGCATTGATAAAACAGCATTGATAACACATTGCATGGAAAATAGGGTGCAGTGA
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| Protein seq | MVDEMADNFSSLEEEEEYATFMAMRFKSENDGFTFYNRYAKGKGFSIRKNFARRDPVTADVIFRQYTCSREGYRRDVYMDIGNKSREPRALTRCGCKAIFEIRLDKKQGDWFAVKFVAKHSHSLAKSDEVPFLRSHRNISIAQKANVVELREVGLRQHQVMDVMERRHGGFESTGFVSRDLYNFFVRQKKKQILGGDADHVIKYMQARQKDDMEYFFEYETDEAGRLKRLFWADPQSRIDYDAFGDVVVFDSTYRVNKYNLPFIPFVGVNHHGSTVIFACAIVADEKVASYEWILKQFLDCMGQKHPRGLITDGDNSMRRAISSVMPHSEHRLCTWHIEQNMARHLRPEMLADFRALIHSTYGPEEFENKWVEFKDKHKVGEDNQWLVRMYNLRKKWAAAYLKGKYFLGMKSNQRSESLNSKLHKHLDRTMSLVVLVEHYEHCVSRIRHREAELDSKASQSVPFTCTDASLIEKEVARIYTPAIFKKVKFEIIKSMDWEVIDFIDEDTVVKYVMCLKENNEKLKILNCTYEESFLKTMSCPCMKLDCESLPCQHMFAVLFYLKMDAIPESCIVRRWTVKAKSVFPSDRYGETFSWSDQMERYRMLRSFGSEVLMKCSISEECTLKVMEMLEKLDLETEDCDGNEIERTLCGHVVGQSLRTDISGHVLVHDPMEVVPKGAQRKRLRGFLEKRVRRCGYCRNGGHTIRSCPIYESIDKTALITHCMENRVQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19050 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0012140 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0011800 | SBH | 0.0 | 0.0 | 0.151149 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0012160 | SBH | 0.0 | 0.0 | 0.643259 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007880 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004350 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0127600 | RBH | 0.222025 | 0.4620615 | 0.1992245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007920 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0394900 | RBH | 7.151125 | 25.735785 | 49.6192705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004280 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004370 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004270 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G011800 | SBH | 0.0 | 0.0 | 0.138761 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007840 | SBH | 0.0 | 0.0 | 0.0 |
