Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_01G0115600 | OGI:01022280 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr01:7012104-7013781 | ||||||||
| Gene Symbol | RLCK23, OsRLCK23 | ||||||||||
| DNA seq | ATGGAGTATCTTCACCATGAGCATTATGAGATTGTCCACCACTGTGACCAGAAGCCTAGCAATGTGCTATTTGACGAGGAAACGACGGTGCATGTGGCGGACTTTGGCATCGCAAAGCTGCTGCTGGGTGATGACACCTCCAAGATCACCAATCACGGCAAGCATGCCTGGAACATTTGGGTACATGGCACCAGGTACTAACATAATACATTTTAATTTCCATAAACAAATTGACTGACTGGAATATATCATCATGGATATTACTTTTGTTAGATTATCAATCATGCTTAAAAAAATTGGGACAATTGTGTTTCTGCCCGTGCTTTACGATTCAATTGTGATTTTACCATATATTTTAGGGTTTGTGATTTTTGCCCCTATTTTTTTAAATGAAACAGCCTTCTGCCGATAGGTTTGACAGAAGTCTGGTGGGCCGGAATTTCCGAATTAAACGAAAAAGAAAATGTTATTATAATTTGTGAATGACTATGCTACCCTTGGTTCAATGAAAGAGCCAAATCCCCCAATCCCTTACTAGTAGTATTTCCGATTTCCAATCCAAAACCCTAGCTGGGTTGCAAGCGGCGGCGGCGGCGCACGCGACAAGCGGCGGTGCGGGCCAGCGCGCGGCGGAGTCTGGCGCGCGCAGGGAGGCGCGGCGCAGCGGCCCCGCGGGTGCATGCGTAGGGAGGCGCGGTGGCCGGCGGCCCCGCGGCCAGCGCGCGGCGGAGAGGAGCGGCGGCTGCGTCGGCCAGTGAGCCAGCGAGCCAGCAAGCAGCGAGCAGGGAAGCTTGGCGTCAGGATGGCGCAGCGTATGGGAAGGCGGCGAATCTGGCGCAGCGCCACGGGAAGGCGGCGGCGAAGGCTGCGGCGAGGCAGCTCCTGTACAACGCACGGGCAAGCGAGCAGCGAGCAGCATGGTGCGGCAAGCCGGCAATAGCGACGCACGGCGAGCAGCTCGTCCACAAAGACAAACAATGCCATGTCGTTTGCTGCTTGATTTTCCTTTTATTTTTTTTCCCCATCTCATCACTTGCGACGAATTTGTGATGAATCTTTGTGCTAAAGTTCTGCAACCGTGCGAATTGTGTGAAAATGCTATCAAAATTCTAAAAGAAGTTGGACAAATGTTCAAGGGTATACATGTCTTTTTACGAGTGAATTGACACTGTTAACTGATGATAACAGAATAGGGGTAAACTGAAGCTTCGTTTGAGAAAAGTAAGGGCAAAAATGCACCCTAAAAAAGGAGTAAAATCACAATTAGAATACAAAGTAGGGGTAAGTACACAATTGCCCGAAAAATTTTGTTTCTGAATCTCCTGAGCAAAGTACGGATCACTCGGAAAGGCGTCGTGCAAGAGCGACGTGTTCAGCTTCGGAATCATGCTCCTTGAAGTCTTCACTGGAAAACGACCTACGGATCGATCGTTTGTTCGTTGGAGAAGTGACCATTAGGCAGTGGGTCAATCAAGCATTTTCGGCGAAGCTTGTTCATGTTCTGGACGACAAGCTACAGCTAGATGAGTCCTCTATCGAAGACCTGAATCACCTTCTTTTGAAAATATTTGAGGTTGGTTTGCTCTGCTCAAGTGACTCGCCTGACCAGAGGATGTCAATGGCCGATGTGGTGGTGACGCCGAAGAAGATTAGAAAGGATTATGAAAAAAGAAATTGA
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| CDS seq | ATGGAGTATCTTCACCATGAGCATTATGAGATTGTCCACCACTGTGACCAGAAGCCTAGCAATGTGCTATTTGACGAGGAAACGACGGTGCATGTGGCGGACTTTGGCATCGCAAAGCTGCTGCTGGGTGATGACACCTCCAAGATCACCAATCACGGCAAGCATGCCTGGAACATTTGGCGCCACGGGAAGGCGGCGGCGAAGGCTGCGGCGAGGCAGCTCCTGTACAACGCACGGGCAAGCGAGCAGCGAGCAGCATGGTGCGGCAAGCCGGCAATAGCGACGCACGGCGAGCAGCTCGTCCACAAAGACAAACAATGCCATGTCTCTTCACTGGAAAACGACCTACGGATCGATCGTTTGTTCGTTGGAGAAGTGACCATTAGGCAGTGGGTCAATCAAGCATTTTCGGCGAAGCTTGTTCATGTTCTGGACGACAAGCTACAGCTAGATGAGTCCTCTATCGAAGACCTGAATCACCTTCTTTTGAAAATATTTGAGGTTGGTTTGCTCTGCTCAAGTGACTCGCCTGACCAGAGGATGTCAATGGCCGATGTGGTGGTGACGCCGAAGAAGATTAGAAAGGATTATGAAAAAAGAAATTGA
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| Protein seq | MEYLHHEHYEIVHHCDQKPSNVLFDEETTVHVADFGIAKLLLGDDTSKITNHGKHAWNIWRHGKAAAKAAARQLLYNARASEQRAAWCGKPAIATHGEQLVHKDKQCHVSSLENDLRIDRLFVGEVTIRQWVNQAFSAKLVHVLDDKLQLDESSIEDLNHLLLKIFEVGLLCSSDSPDQRMSMADVVVTPKKIRKDYEKRN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_01G0115600 | OsZS97_01T0115600.1 | Chr01 | 7012104 | 7013781 | + | makerRMon | ||
| CDS seq | ATGGAGTATCTTCACCATGAGCATTATGAGATTGTCCACCACTGTGACCAGAAGCCTAGCAATGTGCTATTTGACGAGGAAACGACGGTGCATGTGGCGGACTTTGGCATCGCAAAGCTGCTGCTGGGTGATGACACCTCCAAGATCACCAATCACGGCAAGCATGCCTGGAACATTTGGCGCCACGGGAAGGCGGCGGCGAAGGCTGCGGCGAGGCAGCTCCTGTACAACGCACGGGCAAGCGAGCAGCGAGCAGCATGGTGCGGCAAGCCGGCAATAGCGACGCACGGCGAGCAGCTCGTCCACAAAGACAAACAATGCCATGTCTCTTCACTGGAAAACGACCTACGGATCGATCGTTTGTTCGTTGGAGAAGTGACCATTAGGCAGTGGGTCAATCAAGCATTTTCGGCGAAGCTTGTTCATGTTCTGGACGACAAGCTACAGCTAGATGAGTCCTCTATCGAAGACCTGAATCACCTTCTTTTGAAAATATTTGAGGTTGGTTTGCTCTGCTCAAGTGACTCGCCTGACCAGAGGATGTCAATGGCCGATGTGGTGGTGACGCCGAAGAAGATTAGAAAGGATTATGAAAAAAGAAATTGA
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| Protein seq | MEYLHHEHYEIVHHCDQKPSNVLFDEETTVHVADFGIAKLLLGDDTSKITNHGKHAWNIWRHGKAAAKAAARQLLYNARASEQRAAWCGKPAIATHGEQLVHKDKQCHVSSLENDLRIDRLFVGEVTIRQWVNQAFSAKLVHVLDDKLQLDESSIEDLNHLLLKIFEVGLLCSSDSPDQRMSMADVVVTPKKIRKDYEKRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.1128885 | 0.218561 | 0.282505 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0113300 | SBH | 0.0 | 0.111526 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g12790 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0113300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009190 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008840 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009190 | SBH | 0.0 | 0.000000 | 0.556664 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008730 | RBH | 0.0 | 0.067251 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008780 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0115900 | SBH | 0.0421745 | 0.70686 | 0.0299945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008780 | SBH | 0.022645 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0115700 | RBH | 0.1765725 | 1.440436 | 0.0401905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008560 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008810 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008760 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008850 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008670 | RBH | 0.0 | 0.415169 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008820 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0008700 | RBH | 0.0 | 0.0 | 0.0 |
