Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0021390 | OGI:12069860 | 13/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:25617698-25618767 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acacacactacccacacgattggcatgcatccgtgcatgattcattcatgatccatctccatcaatttctccactgctaaaacccctctcatctcatctcatctcctatccttcttccaaaccaaccaactccctacttcttctactcctcgtcttcgttcgtcttcgtcttcttgtacaattaattcctcctctttctccgcccaagaaacccacaccaagaacatcttcttcttcttcttctccgtgtcaaaacaaacactgtttctctctctctctctctctctttctctgtgttcagagccaagaagtctctgctctgcatgggtcaggaagaagcagcagccgcgccggccaccgtgatgttctcgtgggagcaggagctgggcgtgcccaagcagaagatggcttctgacgacgacatgcccgagagccccaggaaggcgccgccgccgccggcgcggcggctgtcggtgccgccgcctccggggcggatgctgatggcggggagcaagagcttctccaaggcccgggccgtccggccggaggacgacccgttcttggcggcgtacctggcctgcaccaagagcagcaacggcggcggcggtggcgttgcgcgggagagcaaggggcagaggcggtccagatgggccgggcttgggcttgggcttgggctcgggctctcttgcaagagctcaaatggagttgtggaggacagcatggtgaagatggccaaactgcctgaggttcatcctagggatgcttagtgatgatgatccagttaaatatattctcatcttctaccagtctaaaaaaatcatcttctgtctcaattctcttgtttgttttctttgatttgtttcttgatttggaatttttagtgatggtgatcaagacttgcttgcctgcttggtacttaggaattaattagaggtatagaggaaggcacatgtagatgtgtgcttgtttcatctttctttgcaaaatggagcatatcatttgtgcaggagattatcaagctcatctgtctataagttcaagattgtgtgtgacttgcatgctcttttctc
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| CDS seq | atgggtcaggaagaagcagcagccgcgccggccaccgtgatgttctcgtgggagcaggagctgggcgtgcccaagcagaagatggcttctgacgacgacatgcccgagagccccaggaaggcgccgccgccgccggcgcggcggctgtcggtgccgccgcctccggggcggatgctgatggcggggagcaagagcttctccaaggcccgggccgtccggccggaggacgacccgttcttggcggcgtacctggcctgcaccaagagcagcaacggcggcggcggtggcgttgcgcgggagagcaaggggcagaggcggtccagatgggccgggcttgggcttgggcttgggctcgggctctcttgcaagagctcaaatggagttgtggaggacagcatggtgaagatggccaaactgcctgaggttcatcctagggatgcttag
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| Protein seq | MGQEEAAAAPATVMFSWEQELGVPKQKMASDDDMPESPRKAPPPPARRLSVPPPPGRMLMAGSKSFSKARAVRPEDDPFLAAYLACTKSSNGGGGGVARESKGQRRSRWAGLGLGLGLGLSCKSSNGVVEDSMVKMAKLPEVHPRDA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0021390 | OsPr106_12g0021390.01 | Chr12 | 25617698 | 25618767 | + | NAM | ||
| CDS seq | atgggtcaggaagaagcagcagccgcgccggccaccgtgatgttctcgtgggagcaggagctgggcgtgcccaagcagaagatggcttctgacgacgacatgcccgagagccccaggaaggcgccgccgccgccggcgcggcggctgtcggtgccgccgcctccggggcggatgctgatggcggggagcaagagcttctccaaggcccgggccgtccggccggaggacgacccgttcttggcggcgtacctggcctgcaccaagagcagcaacggcggcggcggtggcgttgcgcgggagagcaaggggcagaggcggtccagatgggccgggcttgggcttgggcttgggctcgggctctcttgcaagagctcaaatggagttgtggaggacagcatggtgaagatggccaaactgcctgaggttcatcctagggatgcttag
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| Protein seq | MGQEEAAAAPATVMFSWEQELGVPKQKMASDDDMPESPRKAPPPPARRLSVPPPPGRMLMAGSKSFSKARAVRPEDDPFLAAYLACTKSSNGGGGGVARESKGQRRSRWAGLGLGLGLGLSCKSSNGVVEDSMVKMAKLPEVHPRDA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.956702 | 0.0 | 3.698737 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0634000 | RBH | 1.024545 | 0.0 | 1.330516 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g43750 | RBH | 0.619998 | 0.0 | 0.285098 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0634000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021990 | RBH | 0.0 | 0.502044 | 1.017344 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0022080 | RBH | 0.0 | 1.005993 | 0.841981 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022440 | RBH | 0.0 | 0.0 | 2.473871 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029300 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0365500 | RBH | 1.3245865 | 1.570248 | 0.279786 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0397700 | RBH | 1.1830155 | 2.2822445 | 0.19748 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021760 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021620 | RBH | 2.201618 | 5.901166 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0021720 | RBH | 0.172428 | 0.0 | 0.430701 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021410 | RBH | 0.325460 | 0.0 | 2.015848 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0021150 | RBH | 0.0 | 0.0 | 2.955427 |
