Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0019610 | OGI:12066270 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:24123363-24126063 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caatattacaattacgattcaaccgtgatggatggatgctaagacgagcccttttaaatatgccctttgatgatagaTttttttttttggatctcagaagatgggcattagcagtcatcatgatcgttatggtgttgatcgtcccacagatgatgaaaaaaatgatggggcaactaaagaccatttgggtgattgtaaagaaaatgtaaggaccacaacagatagcgaagaacacgacaagaccatagaatatcccgagatggcaaccagtagcgatgaagatgcatcggatggtgaagaagaggcagggatgtcttctgatagcgaagatgactcctcttacaatccccctaaaattgcaaatactgcgtttatactggaagatagcagtcaccgtgatggttctatatacaagggcaatagcgagtggaaaaggacttatcgtattgcagatcttgaggagtaagtgatccagatatccttactgtttttcttttaaaaaaatctattttggtcttacaaattttatcaagctataaatcaatcattatatttgctactgtaaatacctacaggtttgggctcaagttgcagtattctgaaacccctaactaaaattgcaacaaactgataattttgacaaaaatatgtgtagttctttttatagaattattcaaaaaatataaagcggtttgacccaggattttctgcaacccaattgatgtgcaaaagtatagttttctttctttgtaccaagtttttgctgaccgtattaattgttgcattggttgtaatatgacatgtgatcattggggaagctcgattggaggcgatgatattatcaggtcctaaatattgcattatgcatggtgaaacatgtataaggcatggaccatgtcctatgttgcactttttctcactaaaactggctgaaattgctgtcaccggtggcccagtagagctgtatggatacttagcagcacgggaccttttggatccattgcgcaactatatattccatactagcagggatgatcccatcatagtggagaaggtgcacatccctactctgcatttttttttaaattactttgttttatttcataatatgaagtcatcatcacatgcatacaacaggaggagataattttgatggtattctaaaagcaagttaatctgttctacatcatccaatcaacggaaatgttgtaataactgtgctcatgatgtttagacataggctcaatttgcactcacaattttcttgattttaagacatatggttagtttatgttgctgtgacatttataaagtgttttacttcatagcacaacttattatggttttgggagcacggccatgaaaagctatctccagttatcccctatttcataactctatattttctaattagttaaatgtctgtggcctcattacagttaaaagtaatacatatatatatatatcctgacattgctagaaacaaatgcttagatatttactttttgtgaatatttctattatagtaatatttcggtgttatggctgaaaaaacatgcttcaaggtggtcaacatacccaaaagtagcagaatagaaacagttgattgtgtaagccattacgatgctaaccaagattttggttgtggtaattatactatcaaataaacctatataattaaattaagtatgacgttttatgtgttacaaagaaatcaaacataatagtttatacctttagtagctatctgataatacatttttttccttaatctgtaggaatacaagatacactgcacagtactatcctttttttttctctcatagtaactccacaaacatccataatttaatatttgacagctctagataaaattgaattattctatcgggtagttttgctatctctgtcaatcttatacacttggcagccattcagtgtttgatgtgtttaatatactaggttctttatttgcataaagttcgtttcactctgctttataagctgttgaatgtaagcatattccagatatatgtagttaatagtaaaataacatatcgacccatttcattgtcctatttttctatgatgagctaataagtaacattgtttctgtagggttccctcatcgaaatatctggccctaaacgagggatcgaaatattaagtgatgtcctaatcgagtttgatatgaggataaagacaggagcagaagaagaagatgatcgacagctgattgatggtgtattagtagtaggttgtgagacaccaacagatgtaacattgagaagacgcatccatggcgattgcggtacggtcgagataaaattttcacatctacgaaatgcagtggaggcgacggtacaggttgccatattggaagtgcagagtcatttcaatctgtctatcggttcttatgtgggttcgttacctgacgaaatgcagctgttttgtggccacatcgtcgagccatgtggcttaaggaagtttgtgctttctgcaatgatgcgtaatttgctgcgattgaagttgaaggtaagccaaggagggtcttacgctgcacatttttgctcgttcgaaccaaatcaccatggacattcatgtcagcagataaatactgagtttgcatccttcctggtgaagattacttggtcgactttggactttggaaatccacagaattatctgtaattcacaaccg
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| CDS seq | atgggcattagcagtcatcatgatcgttatggtgttgatcgtcccacagatgatgaaaaaaatgatggggcaactaaagaccatttgggtgattgtaaagaaaatgtaaggaccacaacagatagcgaagaacacgacaagaccatagaatatcccgagatggcaaccagtagcgatgaagatgcatcggatggtgaagaagaggcagggatgtcttctgatagcgaagatgactcctcttacaatccccctaaaattgcaaatactgcgtttatactggaagatagcagtcaccgtgatggttctatatacaagggcaatagcgagtggaaaaggacttatcgtattgcagatcttgaggagcatggaccatgtcctatgttgcactttttctcactaaaactggctgaaattgctgtcaccggtggcccagtagagctgtatggatacttagcagcacgggaccttttggatccattgcgcaactatatattccatactagcagggatgatcccatcatagtggagaagggttccctcatcgaaatatctggccctaaacgagggatcgaaatattaagtgatgtcctaatcgagtttgatatgaggataaagacaggagcagaagaagaagatgatcgacagctgattgatggtgtattagtagtaggttgtgagacaccaacagatgtaacattgagaagacgcatccatggcgattgcggtacggtcgagataaaattttcacatctacgaaatgcagtggaggcgacggtacaggttgccatattggaagtgcagagtcatttcaatctgtctatcggttcttatgtgggttcgttacctgacgaaatgcagctgttttgtggccacatcgtcgagccatgtggcttaaggaagtttgtgctttctgcaatgatgcgtaatttgctgcgattgaagttgaaggtaagccaaggagggtcttacgctgcacatttttgctcgttcgaaccaaatcaccatggacattcatgtcagcagataaatactgagtttgcatccttcctggtgaagattacttggtcgactttggactttggaaatccacagaattatctgtaa
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| Protein seq | MGISSHHDRYGVDRPTDDEKNDGATKDHLGDCKENVRTTTDSEEHDKTIEYPEMATSSDEDASDGEEEAGMSSDSEDDSSYNPPKIANTAFILEDSSHRDGSIYKGNSEWKRTYRIADLEEHGPCPMLHFFSLKLAEIAVTGGPVELYGYLAARDLLDPLRNYIFHTSRDDPIIVEKGSLIEISGPKRGIEILSDVLIEFDMRIKTGAEEEDDRQLIDGVLVVGCETPTDVTLRRRIHGDCGTVEIKFSHLRNAVEATVQVAILEVQSHFNLSIGSYVGSLPDEMQLFCGHIVEPCGLRKFVLSAMMRNLLRLKLKVSQGGSYAAHFCSFEPNHHGHSCQQINTEFASFLVKITWSTLDFGNPQNYL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0019610 | OsPr106_12g0019610.01 | Chr12 | 24123363 | 24126063 | + | NAM | ||
| CDS seq | atgggcattagcagtcatcatgatcgttatggtgttgatcgtcccacagatgatgaaaaaaatgatggggcaactaaagaccatttgggtgattgtaaagaaaatgtaaggaccacaacagatagcgaagaacacgacaagaccatagaatatcccgagatggcaaccagtagcgatgaagatgcatcggatggtgaagaagaggcagggatgtcttctgatagcgaagatgactcctcttacaatccccctaaaattgcaaatactgcgtttatactggaagatagcagtcaccgtgatggttctatatacaagggcaatagcgagtggaaaaggacttatcgtattgcagatcttgaggagcatggaccatgtcctatgttgcactttttctcactaaaactggctgaaattgctgtcaccggtggcccagtagagctgtatggatacttagcagcacgggaccttttggatccattgcgcaactatatattccatactagcagggatgatcccatcatagtggagaagggttccctcatcgaaatatctggccctaaacgagggatcgaaatattaagtgatgtcctaatcgagtttgatatgaggataaagacaggagcagaagaagaagatgatcgacagctgattgatggtgtattagtagtaggttgtgagacaccaacagatgtaacattgagaagacgcatccatggcgattgcggtacggtcgagataaaattttcacatctacgaaatgcagtggaggcgacggtacaggttgccatattggaagtgcagagtcatttcaatctgtctatcggttcttatgtgggttcgttacctgacgaaatgcagctgttttgtggccacatcgtcgagccatgtggcttaaggaagtttgtgctttctgcaatgatgcgtaatttgctgcgattgaagttgaaggtaagccaaggagggtcttacgctgcacatttttgctcgttcgaaccaaatcaccatggacattcatgtcagcagataaatactgagtttgcatccttcctggtgaagattacttggtcgactttggactttggaaatccacagaattatctgtaa
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| Protein seq | MGISSHHDRYGVDRPTDDEKNDGATKDHLGDCKENVRTTTDSEEHDKTIEYPEMATSSDEDASDGEEEAGMSSDSEDDSSYNPPKIANTAFILEDSSHRDGSIYKGNSEWKRTYRIADLEEHGPCPMLHFFSLKLAEIAVTGGPVELYGYLAARDLLDPLRNYIFHTSRDDPIIVEKGSLIEISGPKRGIEILSDVLIEFDMRIKTGAEEEDDRQLIDGVLVVGCETPTDVTLRRRIHGDCGTVEIKFSHLRNAVEATVQVAILEVQSHFNLSIGSYVGSLPDEMQLFCGHIVEPCGLRKFVLSAMMRNLLRLKLKVSQGGSYAAHFCSFEPNHHGHSCQQINTEFASFLVKITWSTLDFGNPQNYL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0228350 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g41470 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0228350 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020260 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020360 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020690 | RBH | 0.0 | 0.0 | 0.242155 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020020 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0344100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019510 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0375200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019980 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019960 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019670 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019470 | RBH | 0.0 | 0.0 | 0.0 |
