Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0018040 | OGI:12062710 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:22449399-22451652 | ||||||||
| Gene Symbol | CYCA1;3, cycA1;3, CycA1;3, CYCA1-3, CYCA3;2, CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1, CYCA2;1 | ||||||||||
| DNA seq | caatctacttaacctcctcctcctcctcgagctccgaatcccaaaaccctagCcccacccgccgccgcacgccggaggaggaggagatggctgacaaggagaactccaccccggcctccgcggcgcggctcacccgctcgtctgcggcggctggggcgcaggccaagcgttcggccgccgcgggcgtcgccgacggtggcgcgccgccggcgaagaggaagcgcgtcgcgctcagcgacctcccgaccctctccaacgccgtcgtcgtcgccccccgccagccgcaccaccccgtcgtcatcaagccgtcgtccaagcagcccgagcccgccgcggaggcggcggcgcccagcggcggcggcggcggctcccccgtgtcatccgcgtcgacgtcgacggcgtcgccctcctccggttgggacccgcagtacgcctccgacatctacacctacctccgatccatggaggtacgcgcttcgatctgcattcgaatggattaggtttggtttggtttgggatctgacgacgatggtgggtgggcgcaggtggaggcgcggaggcagtcggcggcggactacatcgaggcggtgcaggtggacgtgacggcgaacatgcgggccatcctcgtggactggctggtggaggtcgccgacgagtacaagctcgtcgccgacacgctctacctcgccgtctcctacctcgaccgctacctctccgcccacccgctcaggcgcaacaGgctgcagctcctcggcgtcggcgccatgctcatcgctgcgtaagccgccgccgccgccattttcttcctctagtctcctcacattgcatcagagattgggggattgagtttggttgttggatggtggtggtggtggttgcaggaagtacgaggagattagccctcctcatgtggaggatttctgctacatcactgataatacgtacactaggcaggaggttgtcaagatggagagcgacatactcaagcttctcgagttcgagatgggcaatcctaccatcaagacattcctcaggtgggcatactgacccccccaaatgatcataatcctctgcaaatgcttgctcccaatctgaattcgtggctgaatgactcattttgtgcatttcccctttgttccacttaaatttcaggcggttcacgagatcttgccaggaagacaaaaaggtaagcatcaatccgtgtgattcatcatattagtcatttaattcttgctcttttgcttctgtgggtgcataaattggtgtatctgacggattcttgtatactcgttgcagcgctccagcttgttattggagttcatggggagttatcttgctgagcttagtctacttgactacggctgtctccggttcttgccatcggtggttgctgcctcagtggtgtttgttgctaaactgaacattgatccgtacaccaatccttgggtaagaactaaaaactattcccctgtataaagtgctgctgtggatctatacctgaaggctaaaaactgtactgcatgtggttctagagcaagaagatgcagaagttgacaggatacaaggtgtctgaactgaaggattgcatcttggccattcatgacttgcagctcagaaaaaaatgttcaaacttaactgcaattcgcgacaagtacaagcaacacaaggtttgtgcacgtcctgcatcatgtagtcttaatcagattattgtcataattgtagcgttggtctaattctgcaattatttggaacagttcaagtgtgtctcaacattgcttccccctgttgatatccctgcgtcatacctccaagatttaacagagtagctgtttttggtctgcaactttgcgatgttaacagtctgagcttgtctcgagctcccggagataaaggaagaattacagttgcagggcagcttctcagctaagttagagtgctctaagcatttagatgctgaatggttttAaagcctgagccttagggggagatttcagagtctatttaggagccactgaatcgctagcaggctaacaggcattctcctgtttttgtaaaattgtagttctgtattataacttacaacatggtgtcttggtttgttgggagaaaaacttgtaatgtttgatatgctggtccattccctttgttaatctttttttatgaaattgtcggttacagtctcagtaccttcttttccctatttaagggtagaatcacaaatggacttgaataacactggtgacttgaacagtta
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| CDS seq | atggctgacaaggagaactccaccccggcctccgcggcgcggctcacccgctcgtctgcggcggctggggcgcaggccaagcgttcggccgccgcgggcgtcgccgacggtggcgcgccgccggcgaagaggaagcgcgtcgcgctcagcgacctcccgaccctctccaacgccgtcgtcgtcgccccccgccagccgcaccaccccgtcgtcatcaagccgtcgtccaagcagcccgagcccgccgcggaggcggcggcgcccagcggcggcggcggcggctcccccgtgtcatccgcgtcgacgtcgacggcgtcgccctcctccggttgggacccgcagtacgcctccgacatctacacctacctccgatccatggaggtggaggcgcggaggcagtcggcggcggactacatcgaggcggtgcaggtggacgtgacggcgaacatgcgggccatcctcgtggactggctggtggaggtcgccgacgagtacaagctcgtcgccgacacgctctacctcgccgtctcctacctcgaccgctacctctccgcccacccgctcaggcgcaacaGgctgcagctcctcggcgtcggcgccatgctcatcgctgcgaagtacgaggagattagccctcctcatgtggaggatttctgctacatcactgataatacgtacactaggcaggaggttgtcaagatggagagcgacatactcaagcttctcgagttcgagatgggcaatcctaccatcaagacattcctcaggcggttcacgagatcttgccaggaagacaaaaagcgctccagcttgttattggagttcatggggagttatcttgctgagcttagtctacttgactacggctgtctccggttcttgccatcggtggttgctgcctcagtggtgtttgttgctaaactgaacattgatccgtacaccaatccttggagcaagaagatgcagaagttgacaggatacaaggtgtctgaactgaaggattgcatcttggccattcatgacttgcagctcagaaaaaaatgttcaaacttaactgcaattcgcgacaagtacaagcaacacaagttcaagtgtgtctcaacattgcttccccctgttgatatccctgcgtcatacctccaagatttaacagagtag
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| Protein seq | MADKENSTPASAARLTRSSAAAGAQAKRSAAAGVADGGAPPAKRKRVALSDLPTLSNAVVVAPRQPHHPVVIKPSSKQPEPAAEAAAPSGGGGGSPVSSASTSTASPSSGWDPQYASDIYTYLRSMEVEARRQSAADYIEAVQVDVTANMRAILVDWLVEVADEYKLVADTLYLAVSYLDRYLSAHPLRRNRLQLLGVGAMLIAAKYEEISPPHVEDFCYITDNTYTRQEVVKMESDILKLLEFEMGNPTIKTFLRRFTRSCQEDKKRSSLLLEFMGSYLAELSLLDYGCLRFLPSVVAASVVFVAKLNIDPYTNPWSKKMQKLTGYKVSELKDCILAIHDLQLRKKCSNLTAIRDKYKQHKFKCVSTLLPPVDIPASYLQDLTE |
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| Function | Cyclin-A3-2 [UniProtKB/Swiss-Prot:Q2QN26] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0018040 | OsPr106_12g0018040.01 | Chr12 | 22449399 | 22451652 | + | NAM | ||
| CDS seq | atggctgacaaggagaactccaccccggcctccgcggcgcggctcacccgctcgtctgcggcggctggggcgcaggccaagcgttcggccgccgcgggcgtcgccgacggtggcgcgccgccggcgaagaggaagcgcgtcgcgctcagcgacctcccgaccctctccaacgccgtcgtcgtcgccccccgccagccgcaccaccccgtcgtcatcaagccgtcgtccaagcagcccgagcccgccgcggaggcggcggcgcccagcggcggcggcggcggctcccccgtgtcatccgcgtcgacgtcgacggcgtcgccctcctccggttgggacccgcagtacgcctccgacatctacacctacctccgatccatggaggtggaggcgcggaggcagtcggcggcggactacatcgaggcggtgcaggtggacgtgacggcgaacatgcgggccatcctcgtggactggctggtggaggtcgccgacgagtacaagctcgtcgccgacacgctctacctcgccgtctcctacctcgaccgctacctctccgcccacccgctcaggcgcaacaGgctgcagctcctcggcgtcggcgccatgctcatcgctgcgaagtacgaggagattagccctcctcatgtggaggatttctgctacatcactgataatacgtacactaggcaggaggttgtcaagatggagagcgacatactcaagcttctcgagttcgagatgggcaatcctaccatcaagacattcctcaggcggttcacgagatcttgccaggaagacaaaaagcgctccagcttgttattggagttcatggggagttatcttgctgagcttagtctacttgactacggctgtctccggttcttgccatcggtggttgctgcctcagtggtgtttgttgctaaactgaacattgatccgtacaccaatccttggagcaagaagatgcagaagttgacaggatacaaggtgtctgaactgaaggattgcatcttggccattcatgacttgcagctcagaaaaaaatgttcaaacttaactgcaattcgcgacaagtacaagcaacacaagttcaagtgtgtctcaacattgcttccccctgttgatatccctgcgtcatacctccaagatttaacagagtag
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| Protein seq | MADKENSTPASAARLTRSSAAAGAQAKRSAAAGVADGGAPPAKRKRVALSDLPTLSNAVVVAPRQPHHPVVIKPSSKQPEPAAEAAAPSGGGGGSPVSSASTSTASPSSGWDPQYASDIYTYLRSMEVEARRQSAADYIEAVQVDVTANMRAILVDWLVEVADEYKLVADTLYLAVSYLDRYLSAHPLRRNRLQLLGVGAMLIAAKYEEISPPHVEDFCYITDNTYTRQEVVKMESDILKLLEFEMGNPTIKTFLRRFTRSCQEDKKRSSLLLEFMGSYLAELSLLDYGCLRFLPSVVAASVVFVAKLNIDPYTNPWSKKMQKLTGYKVSELKDCILAIHDLQLRKKCSNLTAIRDKYKQHKFKCVSTLLPPVDIPASYLQDLTE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 6.195746 | 1.352580 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0581800 | RBH | 0.000000 | 0.0 | 2.219334 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g39210 | RBH | 0.000000 | 0.0 | 0.549090 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0581800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018670 | RBH | 0.078180 | 2.354187 | 0.251169 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018780 | RBH | 0.044327 | 1.906186 | 0.763257 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019130 | RBH | 0.0 | 2.666820 | 1.463615 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018460 | RBH | 0.0 | 0.171922 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0025630 | RBH | 0.0 | 7.718596 | 1.921748 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0320900 | RBH | 27.610936 | 99.906429 | 56.829773 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017950 | RBH | 0.043335 | 0.286207 | 0.322001 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0350900 | RBH | 1.7688585 | 5.3485215 | 6.1510015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018140 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018390 | RBH | 0.109880 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018300 | RBH | 0.0 | 7.933036 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018370 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018520 | RBH | 0.0 | 2.729789 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018270 | RBH | 0.0 | 2.376227 | 0.782544 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017960 | RBH | 0.0 | 0.000000 | 0.468885 |
