Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0009750 | OGI:12029830 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:10632759-10635884 | ||||||||
| Gene Symbol | PPR756, OsPPR756 | ||||||||||
| DNA seq | ctactgaagcatcaactcaattccaccaaacttggtcctaaagtgcatcactcttgactcagtgcacagaacagcagtaaggcaagaatttggcaacctcttaccaagtacgatttctagaacttgacagtatccttttctgaaacgcccttctgatttccaccttggatccaaactccaaagatagctcaagcaatgccttgaaatccttttgttcttgccacttccacaaacaatgcctaggcttccaggaagctccataacactgcaatataagaaattcaacagaaaaataacattaagcatctataattgtaacacacatttttttagttctgattagcaaataattagaaattctgtacaattaattcagacaattagaaaaaatgtttgttacagctgggaaataaattaaagtatctaattacatcctcgctactgcgggaaaaaaacattccttttattctttaaacagtgagataatacataaatttaacatcaatcatcatatttctaagtcctacatttcttctccgcattttggtacttagggaagggaagacgagtcatatactccctccgtcccaaaatatagcaacctaggacccattcccatcctaggttgctatattttgggacggagggagtagtagtttacaaataaatcaaaacaactaaccctatatccagaattatccaacattttattgctgatatgaatattgcatgatcgtaatatgctgcaaattattatgcatgagcatccaaagctttgttggtccaaaaatttgatagaacaaaatacggaagtacttgattgaggagctgataggttcccttttgttcttatgctgcttgcagcctcccacttcaattccatcgggcttgcagtggcacgatggtggtcacccttcttggtggtgctgctgccaacttccccatgctgtgcgcctgtgcccctgctgctgatgggctcggccttgtgattccttgttatatatatccaggagtactgatcgttatatccaagagtactgactacattgatccagctaatccaggtggcttgtatacacacctctctttcatcaaaaccctcaccttgtcagcatcatcccatttccctgcctccacacagatgtttgacagcaagacataatttgaggccttgcaaggttccaattcaaataacttctcagctgcaagccatgctatctcgtgattcttgtgtacgcggcatgctccaagcaatgcaccccagacaccagcatttggttggatctgcattccctgaacaagttcaaatgcctctcttagtctcccagctcttccaagaagatcaaccatacaggtataatgctcagccacaggctttaacgagtacaattttatcatcgaattgaagaaatgcaatccttcatcaattaacccagcatgactgcaagctgataacacaactaccaacgtgatctcatcaggtctgacaccgttagcttccatttcccggaatactgctatcacctcagacccattaccattagaagcatagccatcgatgagtgcattccatgaaacgatgtcttgtactaccatctcatcaaagacttgtcttgcttccaacatccttccacacttagcataggcagaaatcaaggcatttccaggagaagaatcactgataaacccagtcctgacaagaagactgtggaattgtctccctatttgcagagtagccaaatttgcacttgcacttagacaacatgcatatgtacaccagtcagcgctctttgcatcccttctcataagcataaaatgctgcagtgcttcaacaaatagaccattttgaacaaatccagagataattgaattccatgaaactgtatttctcctcttcattttcctgaaaatactggctgccttgcgaatttgtccaccctgagcacagccagcaatcatggtgttccaagaaatcatatccttgttcggcatttgctggaataaaaccatggcctcatcaagcataccacactgaacatatcctgatatcattgtattccagcacactgcatcccgaaccacaattccatcaaatagttgacgggcgtcatcaatcaggttgcttttcaaatagccatgcatcagtgcagtctttgctccgacattgtcggaaggcatcttgctgagcacatccttcgcttcttggagcttcccagaacgtacaaaaccactcaccatcgttgtccatgagattgaattcttctctggcatctctataaacagattataggccgcctccacctgagagaactgcacatacccagaaagcagcacattccaagccacaaaattacgctcaggcattctatcaaacaattctcttgcctcgcccatcctccctgcctgacaatacccattgaccaagttaacccaagaaataacattaggtgaggggatccttgaaaagaatgcactggccacatccaaatccccagcacgcacatacccctctagcatcaagttccaggacaccaagtccttatctggcatctcatcaaagaactgcactgatcgagagatttcctcattccggatgagcccccccaacactgagttccatgaaacaatatcaggggccggcatctcctgcaacaaagcaattgcatcctcaaacctgccgttcttggcatacccggagatcatggtgttgtagcacgccgcgcacttctccccgggcatgcggtcgagcagctcccttgcgagggtgagctcaccagcccgcacgtagcaggataccatgattgtccaggagtactcgtttcgggcgggcattgcatcgaatagctctcgcgcatcctcgacgcgcccgtgctgagagcatgccaccatcatggtgttccaggacacggggttgcggcgcggcatctcgtcgaacagcctgcgcgcctcggcgaggcggccgtggtgggccagcgcggagaccatcgcgttgtaggagaccacgttgcggcggggcatctcctcgaacaggcggcgtgcagcggccagctggcccgagcgcgccagcgacgtgagctcctggttgctcctaaacacagcagaggcggtgagcttcgtcgctgccat
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| CDS seq | atggcagcgacgaagctcaccgcctctgctgtgtttaggagcaaccaggagctcacgtcgctggcgcgctcgggccagctggccgctgcacgccgcctgttcgaggagatgccccgccgcaacgtggtctcctacaacgcgatggtctccgcgctggcccaccacggccgcctcgccgaggcgcgcaggctgttcgacgagatgccgcgccgcaaccccgtgtcctggaacaccatgatggtggcatgctctcagcacgggcgcgtcgaggatgcgcgagagctattcgatgcaatgcccgcccgaaacgagtactcctggacaatcatggtatcctgctacgtgcgggctggtgagctcaccctcgcaagggagctgctcgaccgcatgcccggggagaagtgcgcggcgtgctacaacaccatgatctccgggtatgccaagaacggcaggtttgaggatgcaattgctttgttgcaggagatgccggcccctgatattgtttcatggaactcagtgttgggggggctcatccggaatgaggaaatctctcgatcagtgcagttctttgatgagatgccagataaggacttggtgtcctggaacttgatgctagaggggtatgtgcgtgctggggatttggatgtggccagtgcattcttttcaaggatcccctcacctaatgttatttcttgggttaacttggtcaatgggtattgtcaggcagggaggatgggcgaggcaagagaattgtttgatagaatgcctgagcgtaattttgtggcttggaatgtgctgctttctgggtatgtgcagttctctcaggtggaggcggcctataatctgtttatagagatgccagagaagaattcaatctcatggacaacgatggtgagtggttttgtacgttctgggaagctccaagaagcgaaggatgtgctcagcaagatgccttccgacaatgtcggagcaaagactgcactgatgcatggctatttgaaaagcaacctgattgatgacgcccgtcaactatttgatggaattgtggttcgggatgcagtgtgctggaatacaatgatatcaggatatgttcagtgtggtatgcttgatgaggccatggttttattccagcaaatgccgaacaaggatatgatttcttggaacaccatgattgctggctgtgctcagggtggacaaattcgcaaggcagccagtattttcaggaaaatgaagaggagaaatacagtttcatggaattcaattatctctggatttgttcaaaatggtctatttgttgaagcactgcagcattttatgcttatgagaagggatgcaaagagcgctgactggtgtacatatgcatgttgtctaagtgcaagtgcaaatttggctactctgcaaatagggagacaattccacagtcttcttgtcaggactgggtttatcagtgattcttctcctggaaatgccttgatttctgcctatgctaagtgtggaaggatgttggaagcaagacaagtctttgatgagatggtagtacaagacatcgtttcatggaatgcactcatcgatggctatgcttctaatggtaatgggtctgaggtgatagcagtattccgggaaatggaagctaacggtgtcagacctgatgagatcacgttggtagttgtgttatcagcttgcagtcatgctgggttaattgatgaaggattgcatttcttcaattcgatgataaaattgtactcgttaaagcctgtggctgagcattatacctgtatggttgatcttcttggaagagctgggagactaagagaggcatttgaacttgttcagggaatgcagatccaaccaaatgctggtgtctggggtgcattgcttggagcatgccgcgtacacaagaatcacgagatagcatggcttgcagctgagaagttatttgaattggaaccttgcaaggcctcaaattatgtcttgctgtcaaacatctgtgtggaggcagggaaatgggatgatgctgacaaggtgagggttttgatgaaagagaggtgtgtatacaagccacctggattagctggatcaattgttatggagcttcctggaagcctaggcattgtttgtggaagtggcaagaacaaaaggatttcaaggcattgcttgagctatctttggagtttggatccaaggtggaaatcagaagggcgtttcagaaaaggatactgtcaagttctagaaatcgtacttggtaagaggttgccaaattcttgccttactgctgttctgtgcactgagtcaagagtgatgcactttaggaccaagtttggtggaattgagttgatgcttcagtag
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| Protein seq | MAATKLTASAVFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPVSWNTMMVACSQHGRVEDARELFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNFVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANGVRPDEITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGALLGACRVHKNHEIAWLAAEKLFELEPCKASNYVLLSNICVEAGKWDDADKVRVLMKERCVYKPPGLAGSIVMELPGSLGIVCGSGKNKRISRHCLSYLWSLDPRWKSEGRFRKGYCQVLEIVLGKRLPNSCLTAVLCTESRVMHFRTKFGGIELMLQ |
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| Function | Pentatricopeptide repeat-containing protein At4g02750 [UniProtKB/Swiss-Prot:Q9SY02] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0009750 | OsPr106_12g0009750.01 | Chr12 | 10632759 | 10635884 | - | NAM | ||
| CDS seq | atggcagcgacgaagctcaccgcctctgctgtgtttaggagcaaccaggagctcacgtcgctggcgcgctcgggccagctggccgctgcacgccgcctgttcgaggagatgccccgccgcaacgtggtctcctacaacgcgatggtctccgcgctggcccaccacggccgcctcgccgaggcgcgcaggctgttcgacgagatgccgcgccgcaaccccgtgtcctggaacaccatgatggtggcatgctctcagcacgggcgcgtcgaggatgcgcgagagctattcgatgcaatgcccgcccgaaacgagtactcctggacaatcatggtatcctgctacgtgcgggctggtgagctcaccctcgcaagggagctgctcgaccgcatgcccggggagaagtgcgcggcgtgctacaacaccatgatctccgggtatgccaagaacggcaggtttgaggatgcaattgctttgttgcaggagatgccggcccctgatattgtttcatggaactcagtgttgggggggctcatccggaatgaggaaatctctcgatcagtgcagttctttgatgagatgccagataaggacttggtgtcctggaacttgatgctagaggggtatgtgcgtgctggggatttggatgtggccagtgcattcttttcaaggatcccctcacctaatgttatttcttgggttaacttggtcaatgggtattgtcaggcagggaggatgggcgaggcaagagaattgtttgatagaatgcctgagcgtaattttgtggcttggaatgtgctgctttctgggtatgtgcagttctctcaggtggaggcggcctataatctgtttatagagatgccagagaagaattcaatctcatggacaacgatggtgagtggttttgtacgttctgggaagctccaagaagcgaaggatgtgctcagcaagatgccttccgacaatgtcggagcaaagactgcactgatgcatggctatttgaaaagcaacctgattgatgacgcccgtcaactatttgatggaattgtggttcgggatgcagtgtgctggaatacaatgatatcaggatatgttcagtgtggtatgcttgatgaggccatggttttattccagcaaatgccgaacaaggatatgatttcttggaacaccatgattgctggctgtgctcagggtggacaaattcgcaaggcagccagtattttcaggaaaatgaagaggagaaatacagtttcatggaattcaattatctctggatttgttcaaaatggtctatttgttgaagcactgcagcattttatgcttatgagaagggatgcaaagagcgctgactggtgtacatatgcatgttgtctaagtgcaagtgcaaatttggctactctgcaaatagggagacaattccacagtcttcttgtcaggactgggtttatcagtgattcttctcctggaaatgccttgatttctgcctatgctaagtgtggaaggatgttggaagcaagacaagtctttgatgagatggtagtacaagacatcgtttcatggaatgcactcatcgatggctatgcttctaatggtaatgggtctgaggtgatagcagtattccgggaaatggaagctaacggtgtcagacctgatgagatcacgttggtagttgtgttatcagcttgcagtcatgctgggttaattgatgaaggattgcatttcttcaattcgatgataaaattgtactcgttaaagcctgtggctgagcattatacctgtatggttgatcttcttggaagagctgggagactaagagaggcatttgaacttgttcagggaatgcagatccaaccaaatgctggtgtctggggtgcattgcttggagcatgccgcgtacacaagaatcacgagatagcatggcttgcagctgagaagttatttgaattggaaccttgcaaggcctcaaattatgtcttgctgtcaaacatctgtgtggaggcagggaaatgggatgatgctgacaaggtgagggttttgatgaaagagaggtgtgtatacaagccacctggattagctggatcaattgttatggagcttcctggaagcctaggcattgtttgtggaagtggcaagaacaaaaggatttcaaggcattgcttgagctatctttggagtttggatccaaggtggaaatcagaagggcgtttcagaaaaggatactgtcaagttctagaaatcgtacttggtaagaggttgccaaattcttgccttactgctgttctgtgcactgagtcaagagtgatgcactttaggaccaagtttggtggaattgagttgatgcttcagtag
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| Protein seq | MAATKLTASAVFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPVSWNTMMVACSQHGRVEDARELFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNFVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANGVRPDEITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGALLGACRVHKNHEIAWLAAEKLFELEPCKASNYVLLSNICVEAGKWDDADKVRVLMKERCVYKPPGLAGSIVMELPGSLGIVCGSGKNKRISRHCLSYLWSLDPRWKSEGRFRKGYCQVLEIVLGKRLPNSCLTAVLCTESRVMHFRTKFGGIELMLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.590041 | 5.951548 | 12.337415 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0289800 | RBH | 1.335372 | 1.286984 | 3.415443 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g19260 | RBH | 0.800660 | 0.826630 | 0.798557 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0289800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009940 | RBH | 0.541445 | 2.297542 | 3.407288 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0010150 | RBH | 0.166204 | 0.989132 | 1.759013 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010080 | RBH | 0.854599 | 2.005202 | 4.784259 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009810 | RBH | 0.177737 | 0.063427 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0153500 | RBH | 1.3221615 | 3.297251 | 2.9672935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009770 | RBH | 0.196126 | 0.325301 | 1.221150 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0169800 | RBH | 1.8739345 | 3.267825 | 6.618688 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009690 | RBH | 0.121611 | 0.055408 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009960 | RBH | 0.189389 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009900 | RBH | 2.148411 | 5.020370 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009850 | RBH | 0.164064 | 0.0 | 0.536166 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009910 | RBH | 0.120868 | 3.793892 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009670 | RBH | 0.377779 | 2.836344 | 2.416480 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009600 | RBH | 0.640808 | 3.561306 | 1.561746 |
