Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0002860 | OGI:12005000 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:1917130-1917901 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccccttcctcagctctcgatttctaaagacatcgccattatgaagcttgcgcatttgttcggctcttcttcttcgtcttcctcctccaagaaggagaacaaggtgagcagcaagaagaggaggagcggcgccaagagctgctccttcggctccaccacgtcctcgtcgtcgttggcggcgtcatcatccgatgattccgccgccaccacgccgagatccgtgttgccgacgtcggcggcggcgtcctcctccggcaccaagaagccggcggcggcggccgtgacgcgggaggacctggaggtggccctgcggaggatcgtgtcgagcaaggaggagctggccgcgatgctcgccgaggcggattacgccggggagctcgtgctggaggagatcgcggccgcagcggcggacgagggcgagctgaaggagacgttcgcggtgttcgacgccgacggggacgggaggatctccgccgaggagctccgcgccgtgctcgcctcgctcggcgacgagctctgctccgtcgacgactgccgccgcatgatcggcggcgtggacaccgacggcgacgggttcgtctgcttcgacgagttcgcccgcatgatgatgtgtggccgcgcgtgattatatataggttattaggttttgatcgatgtacgtgatgcatgttaatcgatcgtctcctgtatctacgtgtcgttcgtttgctgttcatcgtctgcactgatttcttttgttctctttgtacgtagtagagtttcacagaagaaa
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| CDS seq | atgaagcttgcgcatttgttcggctcttcttcttcgtcttcctcctccaagaaggagaacaaggtgagcagcaagaagaggaggagcggcgccaagagctgctccttcggctccaccacgtcctcgtcgtcgttggcggcgtcatcatccgatgattccgccgccaccacgccgagatccgtgttgccgacgtcggcggcggcgtcctcctccggcaccaagaagccggcggcggcggccgtgacgcgggaggacctggaggtggccctgcggaggatcgtgtcgagcaaggaggagctggccgcgatgctcgccgaggcggattacgccggggagctcgtgctggaggagatcgcggccgcagcggcggacgagggcgagctgaaggagacgttcgcggtgttcgacgccgacggggacgggaggatctccgccgaggagctccgcgccgtgctcgcctcgctcggcgacgagctctgctccgtcgacgactgccgccgcatgatcggcggcgtggacaccgacggcgacgggttcgtctgcttcgacgagttcgcccgcatgatgatgtgtggccgcgcgtga
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| Protein seq | MKLAHLFGSSSSSSSSKKENKVSSKKRRSGAKSCSFGSTTSSSSLAASSSDDSAATTPRSVLPTSAAASSSGTKKPAAAAVTREDLEVALRRIVSSKEELAAMLAEADYAGELVLEEIAAAAADEGELKETFAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMMCGRA |
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| Function | Probable calcium-binding protein CML36 [UniProtKB/Swiss-Prot:Q9SS31] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0002860 | OsPr106_12g0002860.01 | Chr12 | 1917130 | 1917901 | + | NAM | ||
| CDS seq | atgaagcttgcgcatttgttcggctcttcttcttcgtcttcctcctccaagaaggagaacaaggtgagcagcaagaagaggaggagcggcgccaagagctgctccttcggctccaccacgtcctcgtcgtcgttggcggcgtcatcatccgatgattccgccgccaccacgccgagatccgtgttgccgacgtcggcggcggcgtcctcctccggcaccaagaagccggcggcggcggccgtgacgcgggaggacctggaggtggccctgcggaggatcgtgtcgagcaaggaggagctggccgcgatgctcgccgaggcggattacgccggggagctcgtgctggaggagatcgcggccgcagcggcggacgagggcgagctgaaggagacgttcgcggtgttcgacgccgacggggacgggaggatctccgccgaggagctccgcgccgtgctcgcctcgctcggcgacgagctctgctccgtcgacgactgccgccgcatgatcggcggcgtggacaccgacggcgacgggttcgtctgcttcgacgagttcgcccgcatgatgatgtgtggccgcgcgtga
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| Protein seq | MKLAHLFGSSSSSSSSKKENKVSSKKRRSGAKSCSFGSTTSSSSLAASSSDDSAATTPRSVLPTSAAASSSGTKKPAAAAVTREDLEVALRRIVSSKEELAAMLAEADYAGELVLEEIAAAAADEGELKETFAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMMCGRA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 6.324449 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0138050 | RBH | 0.340268 | 1.478955 | 0.842821 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04360 | RBH | 0.203900 | 1.053109 | 0.192248 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0138050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002570 | RBH | 0.0 | 8.549037 | 0.852429 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002780 | RBH | 0.0 | 0.0 | 0.428819 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002810 | RBH | 0.0 | 5.709245 | 2.523618 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002590 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002740 | RBH | 0.0 | 17.265480 | 3.363564 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0032400 | RBH | 1.553388 | 14.738502 | 7.2242465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002830 | RBH | 0.006565 | 0.219122 | 0.156102 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0034300 | RBH | 2.006849 | 28.999302 | 4.7655945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002620 | RBH | 0.0 | 0.159950 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002840 | RBH | 0.212052 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002860 | RBH | 0.0 | 17.109228 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002790 | RBH | 0.251810 | 0.0 | 0.821641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002770 | RBH | 0.150082 | 1.855137 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002670 | RBH | 0.000000 | 2.154235 | 0.886492 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002920 | RBH | 0.0 | 5.253396 | 5.159735 |
