Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsPr106_11g0010540 OGI:11029250 | 16/16 PR 106 | Os127742RS1 | Gramene(+IsoSeq) Chr11:10599498-10606107
Gene Symbol PTR
DNA seq

ttcacttccattggacacagcgtcctcctttttcttctgtgccgcttacttacgccaccactactgccaccgctctcctctcctctttataTttatatatatttgcaccgatcgatcaccactagcaaggcagaaatattggctgcaacttcaacaaccagatcatcagatcacgtagcaagaatagtttcagaattcagagaaagagagagagaggtgattgatgggaagctcatcagggctagtggactggagggggaggccggtggacaccaagaagcatggaggtgtcagagcatccatcttcatccatggtgagcttatgatggttgcatatgcttctttttttcttgcttgatttcttctccttgtttggttgatatgtctctcctttgctcactgctgagagttgttggtttctgttcatggctagctagcttgtagaatagtagaaatgagacatattagtcaacaaagataagcttgttttttgcttgctgggtccatcaatcttggaatatctatgttctctatcgaagcaaccaaaaccttttcttgcttacaacagcaaattaaatacaaactcccccaagtttcaattctatccgtcatgcatcatctcgaattttaattacacggtgctgaaagaaaatttcagtgctcaaaattaaaacagtacaacgcatgcaagtatatactgtcaagaaagctcagtttttttttcaacttaattaactgacaacgagatatatgcattgcatgcgtacccctttcatgaatctgcatagcgatggtgctgttgaccaacgcgcccaacatcgccaacatgatgaacatggtgagctacctgcggggcaccatgcacatgggcgtggcgcaggcgtcgacgacggcgagcaactacttcgccgcgctgcagatgttctccatcccggccgccttcctcgccgactcctacctcaagcgcttctacaccgtcctcctcttcgcgcctatcgagatcatagtatgtccatttttaatttaagatgcggttttagtttgatcaccattaattttttattatgttaatataatacataattacaatagtataagcactttccagctccatcgtttcaattattcggcgaataagaaaaacaacatatttgcaaaagaaaaatattttttacgtaaaacttttatacgtgttcttagcgatctaaaagtaaaagctcaaaaataaacttagatgaaaatttaaggatgcaaattcaaattttggctgataagcataagcataagcgaaaagatgtggctgttgacataaattatataattcttgcaaaacagaatataatctaaatattagttttaaatatattaatggacaagttgtAaaaaataatataatattggtgtagttagacttttactagtatttcaagtagaaaaactaatagatgtgttggatgattgtgatactaatgaagaatcaagagatttttaaactccaataaaatatatccaatatggttgtcctctagcacaatttgacactactaggatgtgtttggataatgggaaatggggggtggggttgggattgggaaatgaatgaaaggttaggattaaatggaagagagggaatgaatggttaggatttaaagatgggtgggaaatcatttcccttccccatttgccaaacattgccctattttttcatgcctaccgtcttgtccataaaagaattacactaccgaacaaattgatatcactttcagttcctaagtccaaaccggcattactatcgtcgccaacccggtaaatgatgcttagtatcagttctggttcacaatattttaagcagcaaattactgagagccaacaatggatattcaatttatTGActgcgtgtgtagtactagttttacatgttcttttactttttgtgtgtgtcataatagtggctcgctgaaaagaaaagtgtggagttgtaggatctggagttgcttgtcacgcgtcaactttcagtttgattcgtatgtagtgcagacagcagggttgtcactttcatcctttacgaaaacaaaaaataccagccactaagttggaatatctcttcaaaaactatttggatcgatgtgaccatgcatgatataagcaagcaactaagcaacccaccacgttgatagcctagaacgacattgcagctctggaggtagcggaaaaatacatgtaaatgttggcagaaaatatgtgcaaaattgaagctgttcaacacaacaacagggcagtggatcggcccctgacaaaatgcaaaattccatggacagtgaacttactgttctgtcagtctgcaaagcataaacttatcttttccTttaatttccttgatgcataatcgatttttaaataaaattttccatggtgacatatagcaccatgatgtaaatttcaactcattttcaaatctaaatgctctagggtatcgcctgacgttctctcacttatgtgctctatttcaatccgatagtaacaggttttaccccaaatttcaaaattgaataattaattagactgcaggcattcgatttatctaaagagagtaacaaagaagctaggtgtccccaacaacagaccacccactgtggttttatgcatggtaggagaaggaaacacatcaccatatatgtatatggggcatagataatgatgataggcattaggcaacgaaagatgcagtcatgcagtctatcatgggagacagatttttttttttttttgggggggggggGATGGGAGACAGAGTTGAGCATTATTGGGACGAAACGACTTtttttttttgtgatatggtgcagatgaagttggtagggtgtgagtaatagtgaaatacttgaggaatagcgctctcaaaataaaaagacctaagggttttaataaacacatgttatcatgatctcacatgattattggagcattaccatccaagaaacgacatataatatattttatattatttactaactcgccattagtcactttttcttactacatagcacctactcgatcttttcttcgacaacttttctagaagctgtcaactttggaactgctctctcaactataataggtatgattataccgatgtgattggcaatcagactgccgagtgctgattaatggcccgatttttaattaggaaaaggatgtccacaaccaaataattgattgataagcgacatcaagttaagtagaaaagagaaatgaattttaacctattaaggagtaactttcgacgactaaaaaaatctaagagtatgtttggataatgggaaagagaaatgaatttcaacctattaaggagtaactttaaatactagatattcattttctctcacattttcttatcctaatactttattcatttccacgtcccaatttcacctatgatttcttattatctaaaccaaaccataagagctttttcagctaattcttaggagggaattgaggaattattctcaaaattctcttgaatcccctgggaaataaattaacagggcaaaattggttatatagaattggaagtaaggcctaatactgcaggtccgtaatcagtattgatgcggttttctaatagaaactgcactagctggcagtgctaaaattggttgatgacaggattacccaatttcggaaaccaaattcaaattgaaaattaaattttagaccagcagaaaacctagtatttgaaatttaaattataagtattaattctaccttccaaccggtaaatatcttcacagggtaaatttatcatttcttactaaagtatcaggagataccatagttttaagtgtaaaacttgaaatcttcacatactatatctctaaaggtatcagaattcgtaatgtgaaattttagtatttgacttcttaagaattgtaaaatttctcaaaattaaaacaaaggacaaatttgtttagcacaagatcatgaataagaaaataaccatccaaacaagcttatcagttctgacaaatggatgcatggttactccatggcagggctacatccttctagcagttcaagcgtacaccacctcgctgcacccgccgccgtgcagcccggcggccacggcggcgagcgccaccaccacctgcgagccggtgcgcggcgcgaacctgagcctgctgctgctggggctgtacctgatcccgatcggcgacggcgcggcgagggcgtgcctgccggcgctgggcggggaccagttcgacctgggcgacccggacgagcagcagcaggagacgagcttctacaactggtacaccttcgccgtctccaccggcggcttcgtcggcctcgtcttcatcgtgtgggtgcagaacagcaaggggtggggcgtcggcttcgccgtctccgccgccttcgtcgcgctcggcttgctcgtctgggccgccgccttcccgctctaccggaaccagctgccgatggggagccccatcacaagagtattgcaggtgtgtatatgaaatcgaattatcgatggttgtgtttgatataacctcttttgagatttctgaatgttgcagtaattaaatgttttgtgtaatttgcattgaaggttgtttgaagttatatttgtggatgtttagatgatacgagactgacaaacagggtccttgattaaggctacaaaattttgctaaaattgtataggcagagctaaatttcgtctaagattgcactgcaaattccccaatgttaatacaaacatgttgaagtcttctgtgtattCcccccaaaaaatagattgcagtgtaaattgaagctatatttttgtaagtttagtttgtttcaaacaaaatatatgtgtaagttaagaagaacccatgaataaaatagtttaaagcggatgacgaatagcaaaactgttcttttggtttaattctttttcgattggagctgtgtccatgacactataataaagctatgtatctcaggtttttgtagcggcattcaagaaaagaaacgtccggttgccggagaatcccagcgaattgaagcaaattaaccaagatgacgatgccaatgcccacgaagttctccccaaaacagatggatttcggtatgttgtccaaactctggacattggcaagatttagactttgtctgtcggtaatgttggtgcagaggtgtacaattatgatggtgcatcttctctcaccagattaagatttcgggttcaaatggtaaatgtatcttctatatcgacataatggcacaaagccagatgtctcaggatgaaaacatgataggcattcaattaaataaaatatggcaacccacttctataatattccatttacaaggcatgaaacagactttttgtgtcgatagcgttggattataagtaaattgcattctttctctcaacagttgaagtttatcggttaaataagtttgtccattcaacttaataagtagcatcaagattttcattggcttgcaggtgcttggagaaagcggcggtggaaactggcaatgacgctgggccatggtctctgtgcagcgtgacccaggtggaggagaccaagatcgtgctgcgcatggcgcccatcttcgtggccgctgttctcagctacatcccggtgccgctgctcctcagcctcaccgtgcagcagggcaacaccatggacaccaggctcggcgcagtccacatctcgccggcgacgctgttcctcatcccgaccgtcttccagatggtcatcctcatcatctacgaccgcgccatcgtgccgccgctgcgcaggctcacgggctacgtcggtggagtcacccacctccagcggatcggcatcgggttcgtcgctactatcgttgccaccgcaatcgccgcggtggtggagacgaggaggaagatgaccgccgaggagagcgggctagaggacgccaccactgggatcccgctgtccgtgttctggctgacgccgcagttcttcctcattggcattgtcgacgtcacctccttcgtggggctcctcgagttcttctgcagcgaggcgtccatggggatgaagtccatcggcagctccatcttctactgtatcctcggcgtatcagcatggctcggcagccttctcatccaggtcacgaaccgtgtcacccagcgaaccaacggcggagggtggctggatggggccaatttgaacaagggcaagctcgaccggttctatgtcgtcctctgcatcatcgaggtggtggcgctggtgatctacgtgttcttcgcgaggaggtatgtatataggaatgaccagagggttgtggcccaagagcagaggaagggtgacacggggaatggtgtggctgtgatctaaacttgaaatgaaatgagtcgtgtttatatttacatggatgtaacgatatatatggtagtaatagtaaataatttggtggtacgaggagaaatggaggaacttcattgtgaaatttaataagacactatccaggagaaagaaaatcaatgtagatttccagagacggtggaaaaaaaaggaatgcagacgtgccgtgctaaagatagagcatggtgtgggtcgcacaaggaggtccaaaacggtttacc

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CDS seq

atgggaagctcatcagggctagtggactggagggggaggccggtggacaccaagaagcatggaggtgtcagagcatccatcttcatccatgcgatggtgctgttgaccaacgcgcccaacatcgccaacatgatgaacatggtgagctacctgcggggcaccatgcacatgggcgtggcgcaggcgtcgacgacggcgagcaactacttcgccgcgctgcagatgttctccatcccggccgccttcctcgccgactcctacctcaagcgcttctacaccgtcctcctcttcgcgcctatcgagatcataggctacatccttctagcagttcaagcgtacaccacctcgctgcacccgccgccgtgcagcccggcggccacggcggcgagcgccaccaccacctgcgagccggtgcgcggcgcgaacctgagcctgctgctgctggggctgtacctgatcccgatcggcgacggcgcggcgagggcgtgcctgccggcgctgggcggggaccagttcgacctgggcgacccggacgagcagcagcaggagacgagcttctacaactggtacaccttcgccgtctccaccggcggcttcgtcggcctcgtcttcatcgtgtgggtgcagaacagcaaggggtggggcgtcggcttcgccgtctccgccgccttcgtcgcgctcggcttgctcgtctgggccgccgccttcccgctctaccggaaccagctgccgatggggagccccatcacaagagtattgcaggtttttgtagcggcattcaagaaaagaaacgtccggttgccggagaatcccagcgaattgaagcaaattaaccaagatgacgatgccaatgcccacgaagttctccccaaaacagatggatttcgcgtgacccaggtggaggagaccaagatcgtgctgcgcatggcgcccatcttcgtggccgctgttctcagctacatcccggtgccgctgctcctcagcctcaccgtgcagcagggcaacaccatggacaccaggctcggcgcagtccacatctcgccggcgacgctgttcctcatcccgaccgtcttccagatggtcatcctcatcatctacgaccgcgccatcgtgccgccgctgcgcaggctcacgggctacgtcggtggagtcacccacctccagcggatcggcatcgggttcgtcgctactatcgttgccaccgcaatcgccgcggtggtggagacgaggaggaagatgaccgccgaggagagcgggctagaggacgccaccactgggatcccgctgtccgtgttctggctgacgccgcagttcttcctcattggcattgtcgacgtcacctccttcgtggggctcctcgagttcttctgcagcgaggcgtccatggggatgaagtccatcggcagctccatcttctactgtatcctcggcgtatcagcatggctcggcagccttctcatccaggtcacgaaccgtgtcacccagcgaaccaacggcggagggtggctggatggggccaatttgaacaagggcaagctcgaccggttctatgtcgtcctctgcatcatcgaggtggtggcgctggtgatctacgtgttcttcgcgaggaggtatgtatataggaatgaccagagggttgtggcccaagagcagaggaagggtgacacggggaatggtgtggctgtgatctaa

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Protein seq

MGSSSGLVDWRGRPVDTKKHGGVRASIFIHAMVLLTNAPNIANMMNMVSYLRGTMHMGVAQASTTASNYFAALQMFSIPAAFLADSYLKRFYTVLLFAPIEIIGYILLAVQAYTTSLHPPPCSPAATAASATTTCEPVRGANLSLLLLGLYLIPIGDGAARACLPALGGDQFDLGDPDEQQQETSFYNWYTFAVSTGGFVGLVFIVWVQNSKGWGVGFAVSAAFVALGLLVWAAAFPLYRNQLPMGSPITRVLQVFVAAFKKRNVRLPENPSELKQINQDDDANAHEVLPKTDGFRVTQVEETKIVLRMAPIFVAAVLSYIPVPLLLSLTVQQGNTMDTRLGAVHISPATLFLIPTVFQMVILIIYDRAIVPPLRRLTGYVGGVTHLQRIGIGFVATIVATAIAAVVETRRKMTAEESGLEDATTGIPLSVFWLTPQFFLIGIVDVTSFVGLLEFFCSEASMGMKSIGSSIFYCILGVSAWLGSLLIQVTNRVTQRTNGGGWLDGANLNKGKLDRFYVVLCIIEVVALVIYVFFARRYVYRNDQRVVAQEQRKGDTGNGVAVI

Function Protein NRT1/ PTR FAMILY 4.5 [UniProtKB/Swiss-Prot:Q8VYE4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsPr106_11g0010540 OsPr106_11g0010540.01 Chr11 10599498 10606107 + NAM
CDS seq

atgggaagctcatcagggctagtggactggagggggaggccggtggacaccaagaagcatggaggtgtcagagcatccatcttcatccatgcgatggtgctgttgaccaacgcgcccaacatcgccaacatgatgaacatggtgagctacctgcggggcaccatgcacatgggcgtggcgcaggcgtcgacgacggcgagcaactacttcgccgcgctgcagatgttctccatcccggccgccttcctcgccgactcctacctcaagcgcttctacaccgtcctcctcttcgcgcctatcgagatcataggctacatccttctagcagttcaagcgtacaccacctcgctgcacccgccgccgtgcagcccggcggccacggcggcgagcgccaccaccacctgcgagccggtgcgcggcgcgaacctgagcctgctgctgctggggctgtacctgatcccgatcggcgacggcgcggcgagggcgtgcctgccggcgctgggcggggaccagttcgacctgggcgacccggacgagcagcagcaggagacgagcttctacaactggtacaccttcgccgtctccaccggcggcttcgtcggcctcgtcttcatcgtgtgggtgcagaacagcaaggggtggggcgtcggcttcgccgtctccgccgccttcgtcgcgctcggcttgctcgtctgggccgccgccttcccgctctaccggaaccagctgccgatggggagccccatcacaagagtattgcaggtttttgtagcggcattcaagaaaagaaacgtccggttgccggagaatcccagcgaattgaagcaaattaaccaagatgacgatgccaatgcccacgaagttctccccaaaacagatggatttcgcgtgacccaggtggaggagaccaagatcgtgctgcgcatggcgcccatcttcgtggccgctgttctcagctacatcccggtgccgctgctcctcagcctcaccgtgcagcagggcaacaccatggacaccaggctcggcgcagtccacatctcgccggcgacgctgttcctcatcccgaccgtcttccagatggtcatcctcatcatctacgaccgcgccatcgtgccgccgctgcgcaggctcacgggctacgtcggtggagtcacccacctccagcggatcggcatcgggttcgtcgctactatcgttgccaccgcaatcgccgcggtggtggagacgaggaggaagatgaccgccgaggagagcgggctagaggacgccaccactgggatcccgctgtccgtgttctggctgacgccgcagttcttcctcattggcattgtcgacgtcacctccttcgtggggctcctcgagttcttctgcagcgaggcgtccatggggatgaagtccatcggcagctccatcttctactgtatcctcggcgtatcagcatggctcggcagccttctcatccaggtcacgaaccgtgtcacccagcgaaccaacggcggagggtggctggatggggccaatttgaacaagggcaagctcgaccggttctatgtcgtcctctgcatcatcgaggtggtggcgctggtgatctacgtgttcttcgcgaggaggtatgtatataggaatgaccagagggttgtggcccaagagcagaggaagggtgacacggggaatggtgtggctgtgatctaa

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Protein seq

MGSSSGLVDWRGRPVDTKKHGGVRASIFIHAMVLLTNAPNIANMMNMVSYLRGTMHMGVAQASTTASNYFAALQMFSIPAAFLADSYLKRFYTVLLFAPIEIIGYILLAVQAYTTSLHPPPCSPAATAASATTTCEPVRGANLSLLLLGLYLIPIGDGAARACLPALGGDQFDLGDPDEQQQETSFYNWYTFAVSTGGFVGLVFIVWVQNSKGWGVGFAVSAAFVALGLLVWAAAFPLYRNQLPMGSPITRVLQVFVAAFKKRNVRLPENPSELKQINQDDDANAHEVLPKTDGFRVTQVEETKIVLRMAPIFVAAVLSYIPVPLLLSLTVQQGNTMDTRLGAVHISPATLFLIPTVFQMVILIIYDRAIVPPLRRLTGYVGGVTHLQRIGIGFVATIVATAIAAVVETRRKMTAEESGLEDATTGIPLSVFWLTPQFFLIGIVDVTSFVGLLEFFCSEASMGMKSIGSSIFYCILGVSAWLGSLLIQVTNRVTQRTNGGGWLDGANLNKGKLDRFYVVLCIIEVVALVIYVFFARRYVYRNDQRVVAQEQRKGDTGNGVAVI

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Gene Transcript Chromosome Start End Strand Source
OsPr106_11g0010540 OsPr106_11g0010540.02 Chr11 10599615 10605993 + IsoSeq
CDS seq

accactagcaaggcagaaatattggctgcaacttcaacaaccagatcatcagatcacgtagcaagaatagtttcagaattcagagaaagagagagagaggtgattgatgggaagctcatcagggctagtggactggagggggaggccggtggacaccaagaagcatggaggtgtcagagcatccatcttcatccatgcgatggtgctgttgaccaacgcgcccaacatcgccaacatgatgaacatggtgagctacctgcggggcaccatgcacatgggcgtggcgcaggcgtcgacgacggcgagcaactacttcgccgcgctgcagatgttctccatcccggccgccttcctcgccgactcctacctcaagcgcttctacaccgtcctcctcttcgcgcctatcgagatcataggctacatccttctagcagttcaagcgtacaccacctcgctgcacccgccgccgtgcagcccggcggccacggcggcgagcgccaccaccacctgcgagccggtgcgcggcgcgaacctgagcctgctgctgctggggctgtacctgatcccgatcggcgacggcgcggcgagggcgtgcctgccggcgctgggcggggaccagttcgacctgggcgacccggacgagcagcagcaggagacgagcttctacaactggtacaccttcgccgtctccaccggcggcttcgtcggcctcgtcttcatcgtgtgggtgcagaacagcaaggggtggggcgtcggcttcgccgtctccgccgccttcgtcgcgctcggcttgctcgtctgggccgccgccttcccgctctaccggaaccagctgccgatggggagccccatcacaagagtattgcaggtttttgtagcggcattcaagaaaagaaacgtccggttgccggagaatcccagcgaattgaagca

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Protein seq

TTSKAEILAATSTTRSSDHVARIVSEFREREREVIDGKLIRASGLEGEAGGHQEAWRCQSIHLHPCDGAVDQRAQHRQHDEHGELPAGHHAHGRGAGVDDGEQLLRRAADVLHPGRLPRRLLPQALLHRPPLRAYRDHRLHPSSSSSVHHLAAPAAVQPGGHGGERHHHLRAGARREPEPAAAGAVPDPDRRRRGEGVPAGAGRGPVRPGRPGRAAAGDELLQLVHLRRLHRRLRRPRLHRVGAEQQGVGRRLRRLRRLRRARLARLGRRLPALPEPAADGEPHHKSIAGFCSGIQEKKRPVAGESQRIEA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr11 10604610 10605055 + OsPr106_11g0010540.02 OsPr106_11g0010540.02,OsPr106_11g0010540.01 All

Expression

Leaf Root Panicle
FPKM 3.371161 6.177772 9.697157

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0283500 RBH 2.841143 0.991440 6.159686
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g18044 RBH 1.798471 0.622088 1.438260
Nipponbare | IRGSP 1.0 | RAP-db Os11g0283500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0010570 RBH 0.087830 18.571066 3.235806
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0010500 RBH 0.334854 1.880818 4.644979
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0010490 RBH 1.513433 21.442247 7.802786
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0010280 RBH 0.086939 0.113109 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0010560 RBH 0.0 0.0 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0154900 RBH 14.066833 12.5798495 0.372908
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0010460 RBH 0.133752 0.430586 0.481866
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0155800 RBH 11.031989 3.5122385 0.3299935
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0010550 RBH 0.381992 0.123940 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0010750 RBH 0.362675 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0010360 RBH 3.679347 8.494315 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0010140 RBH 0.531403 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0010430 RBH 0.047078 4.642955 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G010510 RBH 0.434426 0.596241 3.278311
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0010290 RBH 1.500142 4.688776 6.275572
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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