Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0003730 | OGI:11008410 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:2602002-2602611 | ||||||||
| Gene Symbol | H3R-21 | ||||||||||
| DNA seq | aatagcccgatttgaacatcatttttccattgataatcaatcagataaacagttcattgcaacaagctactactagtacatcctggttctactaggaagaggtagctgagaacgatgaagcgatcagattattgaactaattttaagcgcgctcaccgcggatgcggcgggcgagctggatgtccttgggcatgatggtgacgcgcttggcgtggatggcgcagaggttggtgtcctcgaagagcccgacgaggtaggcctcggcggcctcctggagcgcggcgacggcggagctctggaaccggaggtccgtcttgaagtcctgcgcgatctcccggacgagccgctggaaggggagcttgcggatcagcagctccgtgctcttctggtacttgcggatctcccggagcgcgacggtgcccggccggaaccggtgcggcttcttcacgccgccggtggccggcgccgacttccgcgccgccttcgtcgccagctgcttcctcggcgccttcccgccggtcgacttccgagccgtctgcttcgtgcgggccatcgcggaggagggaggaggaggcctcggggctctctggcggcgctttggcttggagat
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| CDS seq | atggcccgcacgaagcagacggctcggaagtcgaccggcgggaaggcgccgaggaagcagctggcgacgaaggcggcgcggaagtcggcgccggccaccggcggcgtgaagaagccgcaccggttccggccgggcaccgtcgcgctccgggagatccgcaagtaccagaagagcacggagctgctgatccgcaagctccccttccagcggctcgtccgggagatcgcgcaggacttcaagacggacctccggttccagagctccgccgtcgccgcgctccaggaggccgccgaggcctacctcgtcgggctcttcgaggacaccaacctctgcgccatccacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcccgccgcatccgcggtgagcgcgcttaa
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.2 [UniProtKB/Swiss-Prot:Q76MV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0003730 | OsPr106_11g0003730.01 | Chr11 | 2602002 | 2602611 | - | NAM | ||
| CDS seq | atggcccgcacgaagcagacggctcggaagtcgaccggcgggaaggcgccgaggaagcagctggcgacgaaggcggcgcggaagtcggcgccggccaccggcggcgtgaagaagccgcaccggttccggccgggcaccgtcgcgctccgggagatccgcaagtaccagaagagcacggagctgctgatccgcaagctccccttccagcggctcgtccgggagatcgcgcaggacttcaagacggacctccggttccagagctccgccgtcgccgcgctccaggaggccgccgaggcctacctcgtcgggctcttcgaggacaccaacctctgcgccatccacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcccgccgcatccgcggtgagcgcgcttaa
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 22.474556 | 1.786181 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0155900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g05730 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0155900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0003830 | RBH | 0.0 | 8.239042 | 0.992318 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0003910 | RBH | 0.0 | 7.719718 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0003810 | RBH | 0.0 | 25.547682 | 2.152841 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003760 | RBH | 0.0 | 0.685918 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018680 | SBH | 0.0 | 45.359756 | 4.089548 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0047600 | RBH | 15.0097205 | 5.335709 | 13.415794 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003820 | RBH | 0.0 | 1.574230 | 0.200374 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0047700 | RBH | 10.8490445 | 0.06926 | 50.963663 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003740 | RBH | 0.0 | 0.187514 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003820 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003820 | RBH | 0.0 | 19.514223 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003850 | RBH | 0.0 | 13.001143 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003830 | RBH | 0.0 | 2.683642 | 0.552715 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003810 | RBH | 0.0 | 12.731246 | 0.0 |
