Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0002230 | OGI:11005460 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:1610573-1615164 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaaacttgtgtcgtcggatctcgccacgaaggggaaggaggaccctctagccggatgtaatcatacatgacaccaaagaaggggctcaacgccctcgtctgcgtcatcaacaccacgttgtcgccttcctgcaacatgtaccccttcatcgcgaaatccaagctccattgaacaccatgtactccgtgccgcgcgatcgcgttcccgtcgccgaacgccgccgccgtcgtcaacgcctcgtccgcccagccgttcaccaccacctgcaccctcgacatctgcgccgccgccagctcgacgcggagcgtgtaggtggcgtccgccacgacgtgctccagcctgaaccggatctgccgcgtcgtcggtgcgtacccgtctccttgctttctgcacaacaaggaaaacgcacaattggttcttgatgattcttcagaggttaaccatcgagaggagattgattgattgttcgttgttgttaatttaccttgtgatgtgtgcgaagaaccagtccttggagatgtcgttctcgccgatcgtgaagacgagatcgccgtcagggtacagttcggcgtacctctcccacaacccgtactgcctgtacttgtctttggtgatgaagatcttgttgaggtatttggggttgggatcagggatgaagaactctgctgcactcctgtcaggaacacccatctcccacagtgttgggcctgatcttggaggctcgaacacaagatcaccgaggttgatgctacgtcctgtttaaattcagacaaacaatggtagttaaacagagttgttctgatcgagattatcatgttaaatactgtaatagcaaatgccatctgaattagtgctaacttaacctggtgttactgttacttgcgaggtgtacatgtagtccccaagaaacccaggaacccatgcgtagaggttgtacactcctgctctcacattgccaatgctgaagctcccacagggtgttgctcttgtccagaattggtagttattgctctctgtggcccaagaaccgggttgtccaggagaggccaggccaacatatgccatcccagcagctatatctttgctgctgacatacctgaaaaaccatatcaccgggagtaccatcaaattaatagagcaaattaaggtttcagagatgatgatccatgaacaattttgaaccgtacaaatcatcacttactccctccgtttcaaattgtaagactttctagcattgctcatattcatttagaagttaatgaatctagacacatatatatatgcttagattcattaatatttatatgaatatgggcaatactagaaagtcttacattgtgaaacggaggaagtaattacctgtctttgacaaatagcctcccagtgactgatcctctctgtcctgccttgtggaagtcaggggattcagggaagctatatggccatttcctagcttcaacttctgcctgcaccttggcatccacccagagcgaatgcaaatctcctctcctcgggttggagttgaggtagatgaacactggccccatcaccttcttccagtactccccctcctcgatcttcagaacaatgtcgttcccgacgtaatgcgtgccaagaaacatctgtcacgaatcaaaatttcagttttctctctgtaccaagattccaagtgcagagttcgttattagttagtaattagttttagggtgaactaattgatcttactgtcagagaggtcgggccgacatgggaggtgagctcgcgcttgagagggccgccgctcttgaactcgttgctgggggtgatgacccagaatcccatggggttagggtgattgctgctaatccatccatgaactctgttgtccttgttgtccagcgagtactcgtacttgtcatccacctagtacatcacgaattcagaaaatcaccagacgcatacaccaaacagtcgattaaaagatgacagcctgattaatttgtcgtgcaagatgtatcggaattcggttagttaattacctctcctctgaactgtggctccttgggatcaacgagcaggacagcctccttgtatgccaatggagcaccgcgaggtgcatctctgtctgtcgcgctcggcatgaacctctgtatatcgtctgagatcgccatgtagttgaacctgacaaaaacgttcatgaacacatgttttctagattagactgcagatcaagcaaatattgaatgtcttcagagaacaatttttcagaaggaatactcacttgtccgtgttcagtttgaaggcgaggcgagcctctgaaatgttgagagcaggccagtctctgacatgctcaaagatggcatagcagtagaaccctgagctacctttcaacatcacaagcctgcacaaattttagaacagtcatcgtaaaatggcagtgatatttgtatactaccactatatgacaggacaaattatagccaactttattaatacaggtccgaaaattctggagaatggagagtaccttttgtcgatgtttagactgacactatttggacgtgatggattgtaggtgctcctgaaggaaagctccacttggtcttcacttgaggatactaccttgaattcagtactatccagcctgtgaaaattcagtcaattagttcatcttttttgaaagataagcataattccttcagctgtagaccgtaatatggtgcagtgcatactattttagggcctatttgaatcgcaggattgaaaaagtgtaggaataggaaaaacgtaggattttgatgggaatgtaagtgtaaaacagaggattgcaaaatgcaggaaaaacacaggaatgaccgttcgattaaaccgtacgaaaaacacaggaattggatgagagagatagactcaaagaaaggttaccaagaggttgaagctcttgctaaattttttccaaaatttctatatgattgtccattacataggaatttcaaaggattagatatgatgcaatcctttgtttcaaagggcttcataggaaattttcctataggattgaaattctcaaaaatttctatgtttttcctccaatttaaaggggcccttacattactgtgaaattatgttttccagcaagaaaatcatttgagctcttgtacatatcctatgtttattaggcaataatttctgacggtgtttgacactgtttgcttatcagaaaagaactgaagtcacagttacaggttgctcttggtactattgctattaggaagcatctttcggtgcagagtgatgaactgaaaaggcttgttcatattttacagcaaaagcttgttatctgacctgccagttcttcaatccatatgaatatgggtggttcaaaagaaaaatgaacatgattataactagctagcagctatatgtccaagtcgtgttaaataatcgaactagtactgttatattgttgtggacggtgggtaggttgatcttgttaattatgttatgatgagttgtaacagagtaaggcaataaaacaagaacacaattaactacagctagccagttaagtactactacctccgtcctaaaatgtaactatttctagcacagtattttgtcccaaaatgaagctatttttctacttaccttctcctctcaaccaatcacaaccattctttttcaactactttctcttttcaatcaatcacacaccttctttaatcattctcatctacttttttaatacccgtgccaatctaaaaaatgcttatattttgggatggaggaaataactgctaactactagtagtgagtttcagatttatgtacctacttcagtactagtagtagttcagttagaaccagagtactagtttatcgaactttctagctgacatttattttgcacattccaagtagaaaattggtataatttagaaataaattgagaatgaacagtagtcagatcacatatacagatgtggaataagaacacacgcaaagatgatggttgggttggatgactactgaagtactgtagcattcgtggatgcatccttaattttcactttagaacaacaaaaatgaattgaggaccttaagcacaggaagatctcaaagtgcatgcacccaatgcaagcatagttcgcagacgatatagtacaatatacaataaagttaagaagtaatgacgtacatatcgatcatgcctcttggactattggacccagggaagttccataccacatcccagtacctgcaaattaattaacaggtcgatcgagatcaaatttgatacaagataaaatatacagtgtctcgttacatcgcacatatctttatagttatacttttatgttcatgcaagctagctagctagctagtactttttctgaaattaaaagaagaagagactaaagagcaagcaaactaatactacaagtagtaattactccgatcgatcgagagatggaacgtacccggcggagttggcttctccgtcgtagtggagcaggttgcgttcgccgttgtatctgacgccggtgatgtggcccccagggtttgacagcgtcacctgcacgatgccattgtccaccatcacctgcatccacat
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| CDS seq | atgtggatgcaggtgatggtggacaatggcatcgtgcaggtgacgctgtcaaaccctgggggccacatcaccggcgtcagatacaacggcgaacgcaacctgctccactacgacggagaagccaactccgccgggtactgggatgtggtatggaacttccctgggtccaatagtccaagaggcatgatcgatatgctggatagtactgaattcaaggtagtatcctcaagtgaagaccaagtggagctttccttcaggagcacctacaatccatcacgtccaaatagtgtcagtctaaacatcgacaaaaggcttgtgatgttgaaaggtagctcagggttctactgctatgccatctttgagcatgtcagagactggcctgctctcaacatttcagaggctcgcctcgccttcaaactgaacacggacaagttcaactacatggcgatctcagacgatatacagaggttcatgccgagcgcgacagacagagatgcacctcgcggtgctccattggcatacaaggaggctgtcctgctcgttgatcccaaggagccacagttcagaggagaggtggatgacaagtacgagtactcgctggacaacaaggacaacagagttcatggatggattagcagcaatcaccctaaccccatgggattctgggtcatcacccccagcaacgagttcaagagcggcggccctctcaagcgcgagctcacctcccatgtcggcccgacctctctgacaatgtttcttggcacgcattacgtcgggaacgacattgttctgaagatcgaggagggggagtactggaagaaggtgatggggccagtgttcatctacctcaactccaacccgaggagaggagatttgcattcgctctgggtggatgccaaggtatgtcagcagcaaagatatagctgctgggatggcatatgttggcctggcctctcctggacaacccgcattggcaatgtgagagcaggagtgtacaacctctacgcatgggttcctgggtttcttggggactacatgtacacctcgcaagtaacagtaacaccaggacgtagcatcaacctcggtgatcttgtgttcgagcctccaagatcaggcccaacactgtgggagatgggtgttcctgacaggagtgcagcagagttcttcatccctgatcccaaccccaaatacctcaacaagatcttcatcaccaaagacaagtacaggcagtacgggttgtgggagaggtacgccgaactgtaccctgacggcgatctcgtcttcacgatcggcgagaacgacatctccaaggactggttcttcgcacacatcacaagaaagcaaggagacgggtacgcaccgacgacgcggcagatccggttcaggctggagcacgtcgtggcggacgccacctacacgctccgcgtcgagctggcggcggcgcagatgtcgagggtgcaggtggtggtgaacggctgggcggacgaggcgttgacgacggcggcggcgttcggcgacgggaacgcgatcgcgcggcacggagtacatggtgttcaatggagcttggatttcgcgatgaaggggtacatgttgcaggaaggcgacaacgtggtgttgatgacgcagacgagggcgttgagccccttctttggtgtcatgtatgattacatccggctagagggtcctccttccccttcgtggcgagatccgacgacacaagtttga
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| Protein seq | MWMQVMVDNGIVQVTLSNPGGHITGVRYNGERNLLHYDGEANSAGYWDVVWNFPGSNSPRGMIDMLDSTEFKVVSSSEDQVELSFRSTYNPSRPNSVSLNIDKRLVMLKGSSGFYCYAIFEHVRDWPALNISEARLAFKLNTDKFNYMAISDDIQRFMPSATDRDAPRGAPLAYKEAVLLVDPKEPQFRGEVDDKYEYSLDNKDNRVHGWISSNHPNPMGFWVITPSNEFKSGGPLKRELTSHVGPTSLTMFLGTHYVGNDIVLKIEEGEYWKKVMGPVFIYLNSNPRRGDLHSLWVDAKVCQQQRYSCWDGICWPGLSWTTRIGNVRAGVYNLYAWVPGFLGDYMYTSQVTVTPGRSINLGDLVFEPPRSGPTLWEMGVPDRSAAEFFIPDPNPKYLNKIFITKDKYRQYGLWERYAELYPDGDLVFTIGENDISKDWFFAHITRKQGDGYAPTTRQIRFRLEHVVADATYTLRVELAAAQMSRVQVVVNGWADEALTTAAAFGDGNAIARHGVHGVQWSLDFAMKGYMLQEGDNVVLMTQTRALSPFFGVMYDYIRLEGPPSPSWRDPTTQV |
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| Function | Rhamnogalacturonate lyase [UniProtKB/Swiss-Prot:Q8RJP2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0002230 | OsPr106_11g0002230.01 | Chr11 | 1610573 | 1615164 | - | NAM | ||
| CDS seq | atgtggatgcaggtgatggtggacaatggcatcgtgcaggtgacgctgtcaaaccctgggggccacatcaccggcgtcagatacaacggcgaacgcaacctgctccactacgacggagaagccaactccgccgggtactgggatgtggtatggaacttccctgggtccaatagtccaagaggcatgatcgatatgctggatagtactgaattcaaggtagtatcctcaagtgaagaccaagtggagctttccttcaggagcacctacaatccatcacgtccaaatagtgtcagtctaaacatcgacaaaaggcttgtgatgttgaaaggtagctcagggttctactgctatgccatctttgagcatgtcagagactggcctgctctcaacatttcagaggctcgcctcgccttcaaactgaacacggacaagttcaactacatggcgatctcagacgatatacagaggttcatgccgagcgcgacagacagagatgcacctcgcggtgctccattggcatacaaggaggctgtcctgctcgttgatcccaaggagccacagttcagaggagaggtggatgacaagtacgagtactcgctggacaacaaggacaacagagttcatggatggattagcagcaatcaccctaaccccatgggattctgggtcatcacccccagcaacgagttcaagagcggcggccctctcaagcgcgagctcacctcccatgtcggcccgacctctctgacaatgtttcttggcacgcattacgtcgggaacgacattgttctgaagatcgaggagggggagtactggaagaaggtgatggggccagtgttcatctacctcaactccaacccgaggagaggagatttgcattcgctctgggtggatgccaaggtatgtcagcagcaaagatatagctgctgggatggcatatgttggcctggcctctcctggacaacccgcattggcaatgtgagagcaggagtgtacaacctctacgcatgggttcctgggtttcttggggactacatgtacacctcgcaagtaacagtaacaccaggacgtagcatcaacctcggtgatcttgtgttcgagcctccaagatcaggcccaacactgtgggagatgggtgttcctgacaggagtgcagcagagttcttcatccctgatcccaaccccaaatacctcaacaagatcttcatcaccaaagacaagtacaggcagtacgggttgtgggagaggtacgccgaactgtaccctgacggcgatctcgtcttcacgatcggcgagaacgacatctccaaggactggttcttcgcacacatcacaagaaagcaaggagacgggtacgcaccgacgacgcggcagatccggttcaggctggagcacgtcgtggcggacgccacctacacgctccgcgtcgagctggcggcggcgcagatgtcgagggtgcaggtggtggtgaacggctgggcggacgaggcgttgacgacggcggcggcgttcggcgacgggaacgcgatcgcgcggcacggagtacatggtgttcaatggagcttggatttcgcgatgaaggggtacatgttgcaggaaggcgacaacgtggtgttgatgacgcagacgagggcgttgagccccttctttggtgtcatgtatgattacatccggctagagggtcctccttccccttcgtggcgagatccgacgacacaagtttga
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| Protein seq | MWMQVMVDNGIVQVTLSNPGGHITGVRYNGERNLLHYDGEANSAGYWDVVWNFPGSNSPRGMIDMLDSTEFKVVSSSEDQVELSFRSTYNPSRPNSVSLNIDKRLVMLKGSSGFYCYAIFEHVRDWPALNISEARLAFKLNTDKFNYMAISDDIQRFMPSATDRDAPRGAPLAYKEAVLLVDPKEPQFRGEVDDKYEYSLDNKDNRVHGWISSNHPNPMGFWVITPSNEFKSGGPLKRELTSHVGPTSLTMFLGTHYVGNDIVLKIEEGEYWKKVMGPVFIYLNSNPRRGDLHSLWVDAKVCQQQRYSCWDGICWPGLSWTTRIGNVRAGVYNLYAWVPGFLGDYMYTSQVTVTPGRSINLGDLVFEPPRSGPTLWEMGVPDRSAAEFFIPDPNPKYLNKIFITKDKYRQYGLWERYAELYPDGDLVFTIGENDISKDWFFAHITRKQGDGYAPTTRQIRFRLEHVVADATYTLRVELAAAQMSRVQVVVNGWADEALTTAAAFGDGNAIARHGVHGVQWSLDFAMKGYMLQEGDNVVLMTQTRALSPFFGVMYDYIRLEGPPSPSWRDPTTQV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0134100 | RBH | 0.0 | 0.0 | 0.207493 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03940 | RBH | 0.0 | 0.0 | 0.016918 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0134100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002270 | RBH | 0.0 | 8.984122 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002300 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002290 | RBH | 0.0 | 4.817417 | 0.279377 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002340 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0031900 | RBH | 0.016986 | 0.077622 | 0.0190965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002260 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0030800 | RBH | 0.013694 | 0 | 0.0084955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002160 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002310 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002300 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002240 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002310 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002220 | RBH | 0.0 | 0.958157 | 0.000000 |
