Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0002020 | OGI:11005040 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:1454686-1458096 | ||||||||
| Gene Symbol | OsFbox638, Os_F0021 | ||||||||||
| DNA seq | atgggcccagcagccgcagccgcagcggaggcagcactcgcccgccgcgcggccgacccgctgcccgcgctccgccgccgcgacgcgctcccgctcccgctcccggcgcgcctcttcgcgcagctccacggtctcctcctcaccgccggcctcgcgcgccactcccccaacttctccctcctcctccgcctcgcctcccctctcctccccgtcccccaccgcctccgcctcctcctctcctccccgctcccgcccaccaccttcctcgccaactccctcctcctcgcctcctcctcccccggctgcctcccctccgcgctctccctctacgccctcctcttcctctcctcttcctcctcgccgccgctcctccgccccaacgccttcacctacccgccgctgttccgcgccgcgcctccggccctcgccctcgcgctcgccacccattcgatcaaattcctcggcgcccatgcagcctcctgcgaccgcgtcctcggtgccgcgctgctcgacgtcttcgcccgctgcggaaggatcgcctcgtgccggaaggtgttcgaccggatcgctaaccccgacctgccggcctggaacgcgctgctctccgcctacgcgcgccttcgtgccagggatgtggcctgcgcctcctctgcggcggatgctatcctcgagatgtttgtgcggatgctatccttagccatcaaacccaacgagatcacgctcgtcgccgtcatcggcgcgtgtggcgagcttggcgctgtcagccatggggtgtgggcgcacacctatgccgtgaaacgccggctcgccgtcaactgcattgtggccaccgcgcttgtggagatgtacgccgggtgcgggaggctggacctggccgagcaggtctttgcagccgcttcggacagggacacacgctgctacaatgcgatgctccatggcttggcagtccatggccatggccgtgctgccctctccctgttcgacagaatgcacggtgagggcgtgccggtggatggcgtcactgtgctgtccgtgatgtgtgcttgtgcccatgctggattggtggatgaaggtctggactactttgacagaatggagatcgaattcgggattgagccaagtattgagcattacggatgcatggttgacatgctgagccgggctggtcgacttaacgatgccgagaagctgatccacggaatgcccatcgtgccaaatgctgcgatatacaggtctctgatccgggcctgtggcattcatggcaagctggaactcggcaagaagatgatcgcagaattgatgcgacttgaaccggatgacagtggaaaccatgtcctgatttccaacttctacgcaacaacgaaccgatgggacgacgctaagaaggcgaggaaggagatgaagtccatgggcattgacaagagccctggatcaagctttgtagacatcaatggagttctccatgagttcttggtgggtgacaagacgcatcctgcctcaaaggagatatacgccatggttgaggatattgagaccagattaagcgagtgcggacaccggtcgagcacctcatctgcgttgtttgatgtcgaggaggaggacaaggcggatgcactgtcctaccacagcgagaggctcgccattgcctttgctctgatcgcttccaatccaggagctcccattaggatcatcaagaacctccgggtgtgtgccgattgccatgagagcgcaaagcttgtatctcgggtgtatggtagagagattgtcatgagggaccgtacccggttccatcacttcagagacggggtgtgttcttgtggagatttctggtaaatactcgttgtgttgtattgtacattatacagcgtaatgtgctgtagatttctctcataattctgtggtaaggggatgtgctgtactggtctcacacatttgcttgagatcacaggctgtgtttagttccacgctgaaattggaagtttgaagaaattagaacgatgtgatggaaaagttggaggtttgaagaaaaaagttggaatctaaacagggccacaattcattcggttgtagttcgcatggttcaatatcagTttttttttttttacaatcattttattgatggcggatcaagtgttacatggcaagtggtcaaagaacggaaatgaaattccgaaacttggccgtcgtagttcaatatcagttgtcagaattcaaacagttgtagtttgttataacttgcgcaattcgtgcatatgtggttagatagttcatatgaaaaagaattatttcggggcatacgtggtctattcttcctctagatagttcatatgaaaaggaatgatgttgagattttgtcaaataaacgtgaactggttaaataggcaagcacaggcagttgagacaacaagtctgggtggtgtagttggttatcacgttagtctcacacactaaaggtccccagttcgaacctgggctcagacacaaacatgtttttttccatttttttcaacaatttgaatatttttcttaataacatgtttttttccctttttttcaacgatttgaatatttttcttaataacaacagcataattacatgcaaaaaaaatttctccataacaataacataaacacttgataaccacatgcacatgattttttttttcaaaaattcgaatatttctcaataacaacagcataattacatgcaaaaaatatttctccataacaataacataaacacatgcacatgcacatgatctttcttttattttaaaaaattcaaatatttctcaataacaacagcataaccacatgcacatgacctttttttttttcaaaaaaaccctccatatcatcgagcaactttaacagcataacttttttctttttcaaatatttcctccacaccaacagcataaccacatccacatgattttttttttcaaaaaaaaaagatcttcatatcatcaagcagcagcataagctgcaaaaccatatgcacatgaagtcaaatatttcctatacgacctatatagcatcgtagcagcacaacgatatgcagtaatgcagatgatctcattcacagagttaacagggtttagtgctacagcttcacatccatatgatctcatccactaagttaacagagctttagtgctaccacagcaactagcaaaagatatagtaattgcattagtggctacacgcctacgacatgggcaatgtacagcacaaaatgtgagggtctcatctcatgccacgcaaagcatcagtccttgctacacatttccactaacccaccaccacaaataccgagagcccctttatcactttatgctaccattcatagagtagtttaatatcctgcaaatgtaggatggaagcattaggcagtcacaagagaaatag
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| CDS seq | atgggcccagcagccgcagccgcagcggaggcagcactcgcccgccgcgcggccgacccgctgcccgcgctccgccgccgcgacgcgctcccgctcccgctcccggcgcgcctcttcgcgcagctccacggtctcctcctcaccgccggcctcgcgcgccactcccccaacttctccctcctcctccgcctcgcctcccctctcctccccgtcccccaccgcctccgcctcctcctctcctccccgctcccgcccaccaccttcctcgccaactccctcctcctcgcctcctcctcccccggctgcctcccctccgcgctctccctctacgccctcctcttcctctcctcttcctcctcgccgccgctcctccgccccaacgccttcacctacccgccgctgttccgcgccgcgcctccggccctcgccctcgcgctcgccacccattcgatcaaattcctcggcgcccatgcagcctcctgcgaccgcgtcctcggtgccgcgctgctcgacgtcttcgcccgctgcggaaggatcgcctcgtgccggaaggtgttcgaccggatcgctaaccccgacctgccggcctggaacgcgctgctctccgcctacgcgcgccttcgtgccagggatgtggcctgcgcctcctctgcggcggatgctatcctcgagatgtttgtgcggatgctatccttagccatcaaacccaacgagatcacgctcgtcgccgtcatcggcgcgtgtggcgagcttggcgctgtcagccatggggtgtgggcgcacacctatgccgtgaaacgccggctcgccgtcaactgcattgtggccaccgcgcttgtggagatgtacgccgggtgcgggaggctggacctggccgagcaggtctttgcagccgcttcggacagggacacacgctgctacaatgcgatgctccatggcttggcagtccatggccatggccgtgctgccctctccctgttcgacagaatgcacggtgagggcgtgccggtggatggcgtcactgtgctgtccgtgatgtgtgcttgtgcccatgctggattggtggatgaaggtctggactactttgacagaatggagatcgaattcgggattgagccaagtattgagcattacggatgcatggttgacatgctgagccgggctggtcgacttaacgatgccgagaagctgatccacggaatgcccatcgtgccaaatgctgcgatatacaggtctctgatccgggcctgtggcattcatggcaagctggaactcggcaagaagatgatcgcagaattgatgcgacttgaaccggatgacagtggaaaccatgtcctgatttccaacttctacgcaacaacgaaccgatgggacgacgctaagaaggcgaggaaggagatgaagtccatgggcattgacaagagccctggatcaagctttgtagacatcaatggagttctccatgagttcttggtgggtgacaagacgcatcctgcctcaaaggagatatacgccatggatggaagcattaggcagtcacaagagaaatag
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| Protein seq | MGPAAAAAAEAALARRAADPLPALRRRDALPLPLPARLFAQLHGLLLTAGLARHSPNFSLLLRLASPLLPVPHRLRLLLSSPLPPTTFLANSLLLASSSPGCLPSALSLYALLFLSSSSSPPLLRPNAFTYPPLFRAAPPALALALATHSIKFLGAHAASCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMDGSIRQSQEK |
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| Function | Pentatricopeptide repeat-containing protein At5g43790 [UniProtKB/Swiss-Prot:Q9FG85] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0002020 | OsPr106_11g0002020.01 | Chr11 | 1454686 | 1458096 | + | NAM | ||
| CDS seq | atgggcccagcagccgcagccgcagcggaggcagcactcgcccgccgcgcggccgacccgctgcccgcgctccgccgccgcgacgcgctcccgctcccgctcccggcgcgcctcttcgcgcagctccacggtctcctcctcaccgccggcctcgcgcgccactcccccaacttctccctcctcctccgcctcgcctcccctctcctccccgtcccccaccgcctccgcctcctcctctcctccccgctcccgcccaccaccttcctcgccaactccctcctcctcgcctcctcctcccccggctgcctcccctccgcgctctccctctacgccctcctcttcctctcctcttcctcctcgccgccgctcctccgccccaacgccttcacctacccgccgctgttccgcgccgcgcctccggccctcgccctcgcgctcgccacccattcgatcaaattcctcggcgcccatgcagcctcctgcgaccgcgtcctcggtgccgcgctgctcgacgtcttcgcccgctgcggaaggatcgcctcgtgccggaaggtgttcgaccggatcgctaaccccgacctgccggcctggaacgcgctgctctccgcctacgcgcgccttcgtgccagggatgtggcctgcgcctcctctgcggcggatgctatcctcgagatgtttgtgcggatgctatccttagccatcaaacccaacgagatcacgctcgtcgccgtcatcggcgcgtgtggcgagcttggcgctgtcagccatggggtgtgggcgcacacctatgccgtgaaacgccggctcgccgtcaactgcattgtggccaccgcgcttgtggagatgtacgccgggtgcgggaggctggacctggccgagcaggtctttgcagccgcttcggacagggacacacgctgctacaatgcgatgctccatggcttggcagtccatggccatggccgtgctgccctctccctgttcgacagaatgcacggtgagggcgtgccggtggatggcgtcactgtgctgtccgtgatgtgtgcttgtgcccatgctggattggtggatgaaggtctggactactttgacagaatggagatcgaattcgggattgagccaagtattgagcattacggatgcatggttgacatgctgagccgggctggtcgacttaacgatgccgagaagctgatccacggaatgcccatcgtgccaaatgctgcgatatacaggtctctgatccgggcctgtggcattcatggcaagctggaactcggcaagaagatgatcgcagaattgatgcgacttgaaccggatgacagtggaaaccatgtcctgatttccaacttctacgcaacaacgaaccgatgggacgacgctaagaaggcgaggaaggagatgaagtccatgggcattgacaagagccctggatcaagctttgtagacatcaatggagttctccatgagttcttggtgggtgacaagacgcatcctgcctcaaaggagatatacgccatggatggaagcattaggcagtcacaagagaaatag
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| Protein seq | MGPAAAAAAEAALARRAADPLPALRRRDALPLPLPARLFAQLHGLLLTAGLARHSPNFSLLLRLASPLLPVPHRLRLLLSSPLPPTTFLANSLLLASSSPGCLPSALSLYALLFLSSSSSPPLLRPNAFTYPPLFRAAPPALALALATHSIKFLGAHAASCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMDGSIRQSQEK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0131400 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03690 | RBH | 0.122306 | 0.147849 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0131400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002050 | RBH | 0.0 | 0.000000 | 0.408112 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002100 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002080 | RBH | 0.0 | 0.0 | 0.852120 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002040 | RBH | 0.081266 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002010 | RBH | 0.000000 | 0.0 | 0.423188 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0029100 | RBH | 0.1505025 | 0.713443 | 0.301567 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002020 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0028000 | RBH | 0.116302 | 0.498383 | 0.532889 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001930 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002080 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002010 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002080 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002030 | RBH | 0.000000 | 0.0 | 0.330272 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001990 | RBH | 0.0 | 0.0 | 0.0 |
