Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0001930 | OGI:11004940 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:1420586-1423835 | ||||||||
| Gene Symbol | OsFbox564, Os_F0113 | ||||||||||
| DNA seq | gcagtaccgaataatctctgtaaactctgttaaaaaaaacttactcctagttactagtgccttgaaggaacaacacttcaacttgtgactgtagtttgctactgtacggagtataagttacagatttgtgagtacaccatctatatcttctggaacaagcttctcatctgcctcgtggcgcccaaaatatccatccaaccgatatctcccttttgggtcgatgatcatttgctccaatattaacgcatttctgagaatgcattttgctagctcaacctggcctgtgttgccacaaaatccaaatatgcacaccatcttgagatgatagtgaggctgatccacgatgtcatccaaatccaaagggcacctgttcaagctacaatacatctgcaagaaattatggcatcactaacaaggagcaagctaacacgtaataattagggaaaagaagatcaaagattcatgatcgaggaagagaaggatagcctgaacatatatcttgtcaaaacaaatgcaggggatggaattctgagattttgttagaaaaaagaagcttttgctctgtttggatacaaatatattcaatcaaggaaacacatggctaatcggtttccaaacatattatcaccttgattcatactatttggtatcttgtacagtgcataaatatggtgatgtgatgctcagggtaaacagtgacatcgatatagcaaaagcttctacagatgtcccaaataattatgattaaaatttacaaagtccactgtcaaatggaaaaaaatgcagttgccaactaatgctgaacaatactactttcgccgggccgaacaatattactttgccaaagctatgttcgatggtctgatgatcgttaaaaaggatcaatagtctgcagcgaatgttccagtttctgggacttatgagttcatgaatcatgcatagggcacattggacaagcaggtaattcctaattagattgacagtactggcttagcaggttattctgattgggtttccaaaccaacgaaataacattaaataggaaaaaagaggtaatcagtcaatgagaatacaaaaggcgaactgtaactggctagggaagaaggcaataaaagtagtgaagtacaaatgatatagctacttacatccaaataaagatcctccaaaaatggagctgctacgaaaagataagtcaactggaagactgaatttctatcgaatgaacctctctcaaaagttatttccaaagttagacacttcaattgagtgaacttgagaggtgattgtgtaaatccagacatctggagggtgaccaggccacacataggttcaaacaacaagatgtgaaacagaaaataaaatagaattaaatgtatatagagagtacaagaataatcagacctgagttttgacatgaacttcaacatataacgtttcaacatgaggtaatacacttggaattccagttaatatattttggagggttttctcatcaaaaagtctgatggttgatgctttgatattggagcattcattgagcgttaccaatgccagggaaccgtcgtactcaaatgttgtgagattcggagcatgtaactccattctttgtaaatgacaaccctgaattgacaaatattgcagacggcataatggttctgacacatgtaaattatgcagctggttacatgattggatgcttaaccactctagaacatggcatttcgatattaactgctctaaatgttgcaacctaacattgtcaagagcaagcagtttaaggttgcaaatccgcagaaatctagaggtggattcaaagtaacactgtcaagccgaagagcctcaaggtaagatccattatgtttgtcgaaaatatgacaaggaaagtcatagttgttttcatgtgatttccaatctggggagaagtcaagaatgataacccttgcctttgatgcaatagcaaacgcaacccagccattgacatggttagcatgctcatttgacaaaccaaacttaacagcaaacttatttaccattgttccacaatgtttttccagaatagcatcaacccttttaatgaacttgttaccacttgatattctacagttcagatcagagcttgttccttttctcttggcattatttccaagggctgttttaataccaaagtacagattaggatggaatgtccaagcctgtctccagtttgttgacacaacactcaactgagcgacttcctttaatgttaattttgacattacccttagtacaatatcctgacaatgcattttgaacaagcatcagaatacagcctcctagtcctagcacaaaaggagttgagagtttcatgacttcatgtcatgatatgacataccttgggaagagactgaaaattaagcagacatggtcttgtcctctgtaaattaagctgcccccgacttatcttctgaaaattatgttgtgttcttctcctcttactaatacgttgtccgcaaattatacaattccttttggctgttgtgctcttactcctgaaaccaacaatcagcatgattgacaaggtgatgaaaataaccatgaattctgcctcagcataacatctgtaagatgctctctctttttcaacaagtttcattacagtacaaccctacaggtatgcatgccgaaaaagaaagaagggcagtaactctggctaatgttggtgaaagatatcatgcatgctctgccagtatgcaatgatacttctttcagaagttttaagtagcacacataattgacttcttgaaactattttttttagcaaaataacacatatgtcagagggtattttgcattattattagtagtaacagtacacaaataaatgaatataagcatataatgtgatggaattctgccatgtaaggatgcctttctttagattctctatttatttattttttgcgggggcctttgtttagattccatatcgtattaaaatcacaagcatataaaggaaaaggtgcatgagttgggagtcaccttccatggattttcgaggagacaagaacgttgtcctccattgttggtcgtggaggcagtggatcagggacaagagaaaccctgaatccctccaccgcaggtccgcagtccaacccaatcagcagactcctgatcccggcgagcaaggtagccaggaagggggatggaatgattgtgagacaagggagaggctacttagggctggagccgctcgatcgcgaggcgcagcatc
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| CDS seq | atggaggacaacgttcttgtctcctcgaaaatccatggaaggagtaagagcacaacagccaaaaggaattgtataatttgcggacaacgtattagtaagaggagaagaacacaacataattttcagaagataagtcgggggcagcttaatttacagaggacaagaccatgtctgcttaattttcagtctcttcccaaggatattgtactaagggtaatgtcaaaattaacattaaaggaagtcgctcagttgagtgttgtgtcaacaaactggagacaggcttggacattccatcctaatctgtactttggtattaaaacagcccttggaaataatgccaagagaaaaggaacaagctctgatctgaactgtagaatatcaagtggtaacaagttcattaaaagggttgatgctattctggaaaaacattgtggaacaatggtaaataagtttgctgttaagtttggtttgtcaaatgagcatgctaaccatgtcaatggctgggttgcgtttgctattgcatcaaaggcaagggttatcattcttgacttctccccagattggaaatcacatgaaaacaactatgactttccttgtcatattttcgacaaacataatggatcttaccttgaggctcttcggcttgacagtgttactttgaatccacctctagatttctgcggatttgcaaccttaaactgcttgctcttgacaatgttgcaacatttagagcagttaatatcgaaatgccatgttctagagtggttaagcatccaatcatgtaaccagctgcataatttacatgtgtcagaaccattatgccgtctgcaatatttgtcaattcagggttgtcatttacaaagaatggagttacatgctccgaatctcacaacatttgagtacgacggttccctggcattggtaacgctcaatgaatgctccaatatcaaagcatcaaccatcagactttttgatgagaaaaccctccaaaatatattaactggaattccaagtgtattacctcatgttgaaacgttatatgttgaagttcatgtcaaaactcagatgtctggatttacacaatcacctctcaagttcactcaattgaagtgtctaactttggaaataacttttgagagaggttcattcgatagaaattcagtcttccagttgacttatcttttcgtagcagctccatttttggaggatctttatttggatatgtattgtagcttgaacaggtgccctttggatttggatgacatcgtggatcagcctcactatcatctcaagatggtgtgcatatttggattttgtggcaacacaggccaggttgagctagcaaaatgcattctcagaaatgcgttaatattggagcaaatgatcatcgacccaaaagggagatatcggttggatggatattttgggcgccacgaggcagatgagaagcttgttccagaagatatagatggtgtactcacaaatctgtaa
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| Protein seq | MEDNVLVSSKIHGRSKSTTAKRNCIICGQRISKRRRTQHNFQKISRGQLNLQRTRPCLLNFQSLPKDIVLRVMSKLTLKEVAQLSVVSTNWRQAWTFHPNLYFGIKTALGNNAKRKGTSSDLNCRISSGNKFIKRVDAILEKHCGTMVNKFAVKFGLSNEHANHVNGWVAFAIASKARVIILDFSPDWKSHENNYDFPCHIFDKHNGSYLEALRLDSVTLNPPLDFCGFATLNCLLLTMLQHLEQLISKCHVLEWLSIQSCNQLHNLHVSEPLCRLQYLSIQGCHLQRMELHAPNLTTFEYDGSLALVTLNECSNIKASTIRLFDEKTLQNILTGIPSVLPHVETLYVEVHVKTQMSGFTQSPLKFTQLKCLTLEITFERGSFDRNSVFQLTYLFVAAPFLEDLYLDMYCSLNRCPLDLDDIVDQPHYHLKMVCIFGFCGNTGQVELAKCILRNALILEQMIIDPKGRYRLDGYFGRHEADEKLVPEDIDGVLTNL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0001930 | OsPr106_11g0001930.01 | Chr11 | 1420703 | 1423835 | - | NAM | ||
| CDS seq | atggaggacaacgttcttgtctcctcgaaaatccatggaaggagtaagagcacaacagccaaaaggaattgtataatttgcggacaacgtattagtaagaggagaagaacacaacataattttcagaagataagtcgggggcagcttaatttacagaggacaagaccatgtctgcttaattttcagtctcttcccaaggatattgtactaagggtaatgtcaaaattaacattaaaggaagtcgctcagttgagtgttgtgtcaacaaactggagacaggcttggacattccatcctaatctgtactttggtattaaaacagcccttggaaataatgccaagagaaaaggaacaagctctgatctgaactgtagaatatcaagtggtaacaagttcattaaaagggttgatgctattctggaaaaacattgtggaacaatggtaaataagtttgctgttaagtttggtttgtcaaatgagcatgctaaccatgtcaatggctgggttgcgtttgctattgcatcaaaggcaagggttatcattcttgacttctccccagattggaaatcacatgaaaacaactatgactttccttgtcatattttcgacaaacataatggatcttaccttgaggctcttcggcttgacagtgttactttgaatccacctctagatttctgcggatttgcaaccttaaactgcttgctcttgacaatgttgcaacatttagagcagttaatatcgaaatgccatgttctagagtggttaagcatccaatcatgtaaccagctgcataatttacatgtgtcagaaccattatgccgtctgcaatatttgtcaattcagggttgtcatttacaaagaatggagttacatgctccgaatctcacaacatttgagtacgacggttccctggcattggtaacgctcaatgaatgctccaatatcaaagcatcaaccatcagactttttgatgagaaaaccctccaaaatatattaactggaattccaagtgtattacctcatgttgaaacgttatatgttgaagttcatgtcaaaactcagatgtctggatttacacaatcacctctcaagttcactcaattgaagtgtctaactttggaaataacttttgagagaggttcattcgatagaaattcagtcttccagttgacttatcttttcgtagcagctccatttttggaggatctttatttggatatgtattgtagcttgaacaggtgccctttggatttggatgacatcgtggatcagcctcactatcatctcaagatggtgtgcatatttggattttgtggcaacacaggccaggttgagctagcaaaatgcattctcagaaatgcgttaatattggagcaaatgatcatcgacccaaaagggagatatcggttggatggatattttgggcgccacgaggcagatgagaagcttgttccagaagatatagatggtgtactcacaaatctgtaa
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| Protein seq | MEDNVLVSSKIHGRSKSTTAKRNCIICGQRISKRRRTQHNFQKISRGQLNLQRTRPCLLNFQSLPKDIVLRVMSKLTLKEVAQLSVVSTNWRQAWTFHPNLYFGIKTALGNNAKRKGTSSDLNCRISSGNKFIKRVDAILEKHCGTMVNKFAVKFGLSNEHANHVNGWVAFAIASKARVIILDFSPDWKSHENNYDFPCHIFDKHNGSYLEALRLDSVTLNPPLDFCGFATLNCLLLTMLQHLEQLISKCHVLEWLSIQSCNQLHNLHVSEPLCRLQYLSIQGCHLQRMELHAPNLTTFEYDGSLALVTLNECSNIKASTIRLFDEKTLQNILTGIPSVLPHVETLYVEVHVKTQMSGFTQSPLKFTQLKCLTLEITFERGSFDRNSVFQLTYLFVAAPFLEDLYLDMYCSLNRCPLDLDDIVDQPHYHLKMVCIFGFCGNTGQVELAKCILRNALILEQMIIDPKGRYRLDGYFGRHEADEKLVPEDIDGVLTNL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0001930 | OsPr106_11g0001930.02 | Chr11 | 1420586 | 1423826 | - | IsoSeq | ||
| CDS seq | atgagcatgctaaccatgtcaatggctgggttgcgtttgctattgcatcaaaggcaagggttatcattcttgacttctccccagattggaaatcacatgaaaacaactatgactttccttgtcatattttcgacaaacataatggatcttaccttgaggctcttcggcttgacagtgtta |
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| Protein seq | MSMLTMSMAGLRLLLHQRQGLSFLTSPQIGNHMKTTMTFLVIFSTNIMDLTLRLFGLTVL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.822217 | 3.562451 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0130500 | RBH | 0.0 | 0.0 | 0.679633 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03610 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0130500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001970 | RBH | 0.0 | 2.034512 | 0.768506 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002020 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002000 | RBH | 0.0 | 0.0 | 0.316619 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001960 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0001950 | RBH | 1.364845 | 0.0 | 2.560427 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0028200 | RBH | 0.183132 | 1.502746 | 1.0067255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001940 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0027200 | RBH | 0.2572645 | 1.3970365 | 2.555221 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001840 | RBH | 0.0 | 0.071762 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002000 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001990 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001920 | RBH | 0.109224 | 0.0 | 0.094894 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001990 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001940 | RBH | 0.0 | 0.000000 | 0.720470 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001900 | RBH | 0.0 | 2.350207 | 0.922496 |
