Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_10g0018820 | OGI:10064570 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr10:23345269-23350288 | ||||||||
| Gene Symbol | RLCK304, OsRLCK304, OsBSK1-2, BSK1-2 | ||||||||||
| DNA seq | gacccgcatgagcgcgcagacgcagcccacccaccaccacccccgcacgcgacgcggccgaagcgaatacttttccaaactcctctcctcacactgtatgggttgctgcggctcctcgctgcgggtggggtcccacgcgccggagaagccgccccgccgcgcccgccccccgccgccgccgccgcagccacaccacccgcgccgcccgtccttcaccctcaacgcgcaccaggcggccgcctcctcctccgccgcctccgccgctcccgccccggcgttcgcggagttctcgctggcggagctccgggaggcgacgggcgggttcgcggcggcgaacatcgtgtcggagagcggcgagaaggcgcccaacctcgtctacagggggcggctgcagggggcgggaggcggcggccgcgccatcgccgtgaagaagttcggcaagctggcatggcccgaccccaagcagttcgcggtaagcggggaggggggatgcatccatccaaccaaacaaccaaccaacgaaccagccgcttgcgcgtggattttgggttgccgcgggattggggggttcgggttggttaggcgtggatttggaaactgagtttGGttttgtgggtttttggtttgcaggaggaggcgagaggggtggggaagctgcggcaccggaggatggccaacctcatcggctactgctgcgacggcgacgagcggctcctcgtcgccgagttcatgcccaacgacaccctcgccaagcacctcttccactgtgagtttcctccctccctccactcccctgcaatttaactccgggtctttatattcccctcccatttgatgatcctgccaactattcgacccttctggtcataatggatgttgctatgcttcgtgtgatctgatccaagcttgtgccgagcttatgttattgaagttgataatacttgacaaatggaaccacctaggtgcccagctcctatcaggctacacagttttttcgattagttttgtcggttcagtctgcatttaatttaccttttcgtctaatctttgggagtattaggccattcccaacccaatgactaggatggtgtccatagcattaaataaggtgccacctaggatgaaaaatgatgtggcaagtgaataaatgaggaaagagaaggaaaccatgtcttgcatgagacatggtttctacacaacatccaagacatcatgtgagataaggagcattgaatttaagtatgaaataatagtgtttgcattggaagagtagtgtctagtactagtttcttgatgatgtggagtttatgaaaaccatgtctagtgttttgggttgggaatggccttagtactatcaagtaaggattgcatttattgttagtggttaacgcgtataaacaagcaaagcattggaaaacaagttaattttgatcttaaccgtgcttttgcacttgtgcaggggaaaacaaggctattgaatgggctatgcgcctcagagttgcatacaacattgctgaagcattggaatattgtagcaatgaggaaaggcctttatatcacgacctaaatgcatacagagtactctttgatgaggtaagcgatcaacctgtcaagtacgtttcaatatgtagcacctgaaattgtacatcaggcaagtgattattgtctcttgccaactgccattttgttgacgtaagtgcctttctttatggctggtgttcagtgtctgtagcaataccttaggccccatttggtacgcatgaatttcacagaaaacttacaatttcattttgaaggaggcaggagagcagccatatctagttgacgtctcaaaagtgatatttactatggcagctagccttgattttgtgtcttatcattcaagaaaaccaacaagattaaagggtctgggtgtttaagtttgtcacctattttgatttttcccacctccaagtgctggaaggattgggaaaaccgacggcaaatttagttcctactataggagcacggcaaattacgtagacaaacttgtattgagtcaagtaggctttgtaagatcatagttgattgcattcaacaattcagcatgccatcatgttgtaagaaaagtttctaattaactttcttatcgcagaatggtgatcctcgtctatcatgctttggtttgatgaaaaacagcagggatgggaaaagttatagtacaaacctggcatatacacctccagaatatctgagaaatggtacttgatttttcacattcttgcttaccagtcttgaaaacaaattatccagtattctcttttcggcagttctcttcacttatctgggggaaccattttttaaaatctccttgctgtacaaagttttgtttattgctgttaaaacaataactaaactccttaaagtggaagtcaataaatatgttgtcaaactggattttcttgtagaagggccagtagatcagttattcagcttatggattcctaaattagtgctcttcaagccaacttattggcacttttgtgaatgcgatggaaactatgttcagtgaaaattttgcattttcAaagtagcaaggactgactagaataaaacaggaggaaccacagaatttatgagatgcttgtctgttcttccaggcagggtcacactagaaagtgttgtattcagttttggcacaatactcatcgatcttctcagtggaaagcgcattcctcctacccttgtaagtatGtttctagagttcaatttccattgtgtatcaggccactttcatcaattgcagggtcacactgacaaagttgtttgaaatcttctatacaattatcttccttgtctttttagcacaaatatccgacatccattttttctatttcaatgaatgaaaacatttcctaagatggatctcgcattttagctcatacaagtcgagaattgttggaattccttgtgcgatgagtacaattcttttatgtgtcaaatatagagctagcaattaaccatttattaaaccgtacaagcagtgatagtctgataaatttacgcatttatcatgtgcaggcacttgacatgataagaagcagaagcatccaagcaataatggagacaaatttAGagggaaagtactctatagaggaggctactactctggtggatcttgcttcaaaatgcttacagtatgaaccaagagataggcctgatattaaaaagttggtttccattcttcagcctttgcaaacaaaatcagaggtattaacacttcttttgctcattttttgtttgtcgtggagatatggatataagtagattttgcaaattgcaatatgagtctatgatatatttgtctggaatacattattaagactgggcaatcatgtattatggtgccatattttatgaaatgatagttgtgcacctttttctagtgcatgatgtcaaataaaatagcacacagagtagtatgcaattaataacaTTttagcaatccagttattagccaatttgaacaaatcccaaaactctacagatttacagaacaaacaataccatcatctctgcagttcatgcttttCttgcgttgctacacaagcagattttattgatcaagttgtgttcagtattcttatgtatgcaaaaatatgtaggttattttttaaaaaaatgttataatttattaatgctgttcttagcaacaaagtagttttcaaatacatatatatccttgatggttaaccttgtttacaatgtaaaatacaaaacaggtaccttcttatgtgatgcttggagttccaaagcctgaagaagtaccaaaggcgcctcccgCcccacagcacccactttctcccatgggagaggcctgttccaggatggaccttactgccatccatcagatcctagtttcaacacattacagagatgatgaagggactaatgaggtaaagacaatatagagcactgtggctccactcttttctagctggttgggatactggtccctctcgactgttttcttcctatggggacgtgtctaaattgttctcctctctgcagctatctttccaagaatggactcaacagatgagagatatgttggacgctaggaaacgtggtgattttgcatttcgagacaaaaatttcaagcaagccatagattgttacactcaggtaggaggctgtattatttcttctttatcatgagaccttcaatgttctaaaattaccacTtttcatgtagttcattcatcctctgctcgttatcattttccttcttgaaacatctgcatggttattgtttcacagtttgttgatgtggggacaatggtgtcgccaactgtatatgccagacggagcttgtgccaccttatgtgtgaccaacctgatgctgcactcagggacgcaatgcaagcacagtgtgtgtatcccgattggcccacagctttctacatgcaggcagtggcgctctcaaagctgaacatgcagagtgactctttggacatgttgaacgaggcatcacagctagaagagaagaggcaaaagagcataaaaggtccatgaagaacttgtttaggctcagagaagcggcgttccagaagctggcacttatctgtagtatgttgcggggttaggagttagaagacctatttggagaagatgtttaccggcgtgtcgtatgattaaaaaggaaaacccatttggtttggcttcctacgataggagatgcaTttttttggacccatgtatataacatctgttgaatagttagagcatgggagttcatttgtggtggctaaagagtgttgctggttgttcacaagggtccttgtaggtaaagttaataaaacatgtcctatgtacagaaatatttgtttggaagtacaccaatcccatataaatacatatttgtgtgcatcgcagtgccgttcttcgacacgccgtaagggcttgTttgtatatgttctttttctaaaattttgcttgtttgtacatggttatttagttttttcaaagatgattatattcc
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| CDS seq | atgggttgctgcggctcctcgctgcgggtggggtcccacgcgccggagaagccgccccgccgcgcccgccccccgccgccgccgccgcagccacaccacccgcgccgcccgtccttcaccctcaacgcgcaccaggcggccgcctcctcctccgccgcctccgccgctcccgccccggcgttcgcggagttctcgctggcggagctccgggaggcgacgggcgggttcgcggcggcgaacatcgtgtcggagagcggcgagaaggcgcccaacctcgtctacagggggcggctgcagggggcgggaggcggcggccgcgccatcgccgtgaagaagttcggcaagctggcatggcccgaccccaagcagttcgcggaggaggcgagaggggtggggaagctgcggcaccggaggatggccaacctcatcggctactgctgcgacggcgacgagcggctcctcgtcgccgagttcatgcccaacgacaccctcgccaagcacctcttccactgggaaaacaaggctattgaatgggctatgcgcctcagagttgcatacaacattgctgaagcattggaatattgtagcaatgaggaaaggcctttatatcacgacctaaatgcatacagagtactctttgatgagaatggtgatcctcgtctatcatgctttggtttgatgaaaaacagcagggatgggaaaagttatagtacaaacctggcatatacacctccagaatatctgagaaatggcagggtcacactagaaagtgttgtattcagttttggcacaatactcatcgatcttctcagtggaaagcgcattcctcctacccttgcacttgacatgataagaagcagaagcatccaagcaataatggagacaaatttAGagggaaagtactctatagaggaggctactactctggtggatcttgcttcaaaatgcttacagtatgaaccaagagataggcctgatattaaaaagttggtttccattcttcagcctttgcaaacaaaatcagagctatctttccaagaatggactcaacagatgagagatatgttggacgctaggaaacgtggtgattttgcatttcgagacaaaaatttcaagcaagccatagattgttacactcagtttgttgatgtggggacaatggtgtcgccaactgtatatgccagacggagcttgtgccaccttatgtgtgaccaacctgatgctgcactcagggacgcaatgcaagcacagtgtgtgtatcccgattggcccacagctttctacatgcaggcagtggcgctctcaaagctgaacatgcagagtgactctttggacatgttgaacgaggcatcacagctagaagagaagaggcaaaagagcataaaaggtccatga
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| Protein seq | MGCCGSSLRVGSHAPEKPPRRARPPPPPPQPHHPRRPSFTLNAHQAAASSSAASAAPAPAFAEFSLAELREATGGFAAANIVSESGEKAPNLVYRGRLQGAGGGGRAIAVKKFGKLAWPDPKQFAEEARGVGKLRHRRMANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENKAIEWAMRLRVAYNIAEALEYCSNEERPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTLESVVFSFGTILIDLLSGKRIPPTLALDMIRSRSIQAIMETNLEGKYSIEEATTLVDLASKCLQYEPRDRPDIKKLVSILQPLQTKSELSFQEWTQQMRDMLDARKRGDFAFRDKNFKQAIDCYTQFVDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWPTAFYMQAVALSKLNMQSDSLDMLNEASQLEEKRQKSIKGP |
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| Function | Serine/threonine-protein kinase BSK1-2 [UniProtKB/Swiss-Prot:Q336V9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0018820 | OsPr106_10g0018820.01 | Chr10 | 23345366 | 23350288 | + | NAM | ||
| CDS seq | atgggttgctgcggctcctcgctgcgggtggggtcccacgcgccggagaagccgccccgccgcgcccgccccccgccgccgccgccgcagccacaccacccgcgccgcccgtccttcaccctcaacgcgcaccaggcggccgcctcctcctccgccgcctccgccgctcccgccccggcgttcgcggagttctcgctggcggagctccgggaggcgacgggcgggttcgcggcggcgaacatcgtgtcggagagcggcgagaaggcgcccaacctcgtctacagggggcggctgcagggggcgggaggcggcggccgcgccatcgccgtgaagaagttcggcaagctggcatggcccgaccccaagcagttcgcggaggaggcgagaggggtggggaagctgcggcaccggaggatggccaacctcatcggctactgctgcgacggcgacgagcggctcctcgtcgccgagttcatgcccaacgacaccctcgccaagcacctcttccactgggaaaacaaggctattgaatgggctatgcgcctcagagttgcatacaacattgctgaagcattggaatattgtagcaatgaggaaaggcctttatatcacgacctaaatgcatacagagtactctttgatgagaatggtgatcctcgtctatcatgctttggtttgatgaaaaacagcagggatgggaaaagttatagtacaaacctggcatatacacctccagaatatctgagaaatggcagggtcacactagaaagtgttgtattcagttttggcacaatactcatcgatcttctcagtggaaagcgcattcctcctacccttgcacttgacatgataagaagcagaagcatccaagcaataatggagacaaatttAGagggaaagtactctatagaggaggctactactctggtggatcttgcttcaaaatgcttacagtatgaaccaagagataggcctgatattaaaaagttggtttccattcttcagcctttgcaaacaaaatcagagctatctttccaagaatggactcaacagatgagagatatgttggacgctaggaaacgtggtgattttgcatttcgagacaaaaatttcaagcaagccatagattgttacactcagtttgttgatgtggggacaatggtgtcgccaactgtatatgccagacggagcttgtgccaccttatgtgtgaccaacctgatgctgcactcagggacgcaatgcaagcacagtgtgtgtatcccgattggcccacagctttctacatgcaggcagtggcgctctcaaagctgaacatgcagagtgactctttggacatgttgaacgaggcatcacagctagaagagaagaggcaaaagagcataaaaggtccatga
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| Protein seq | MGCCGSSLRVGSHAPEKPPRRARPPPPPPQPHHPRRPSFTLNAHQAAASSSAASAAPAPAFAEFSLAELREATGGFAAANIVSESGEKAPNLVYRGRLQGAGGGGRAIAVKKFGKLAWPDPKQFAEEARGVGKLRHRRMANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENKAIEWAMRLRVAYNIAEALEYCSNEERPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTLESVVFSFGTILIDLLSGKRIPPTLALDMIRSRSIQAIMETNLEGKYSIEEATTLVDLASKCLQYEPRDRPDIKKLVSILQPLQTKSELSFQEWTQQMRDMLDARKRGDFAFRDKNFKQAIDCYTQFVDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWPTAFYMQAVALSKLNMQSDSLDMLNEASQLEEKRQKSIKGP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0018820 | OsPr106_10g0018820.02 | Chr10 | 23345269 | 23350175 | + | IsoSeq | ||
| CDS seq | gacccgcatgagcgcgcagacgcagcccacccaccaccacccccgcacgcgacgcggccgaagcgaatacttttccaaactcctctcctcacactgtatgggttgctgcggctcctcgctgcgggtggggtcccacgcgccggagaagccgccccgccgcgcccgccccccgccgccgccgccgcagccacaccacccgcgccgcccgtccttcaccctcaacgcgcaccaggcggccgcctcctcctccgccgcctccgccgctcccgccccggcgttcgcggagttctcgctggcggagctccgggaggcgacgggcgggttcgcggcggcgaacatcgtgtcggagagcggcgagaaggcgcccaacctcgtctacagggggcggctgcagggggcgggaggcggcggccgcgccatcgccgtgaagaagttcggcaagctggcatggcccgaccccaagcagttcgcggaggaggcgagaggggtggggaagctgcggcaccggaggatggccaacctcatcggctactgctgcgacggcgacgagcggctcctcgtcgccgagttcatgcccaacgacaccctcgccaagcacctcttccactgggaaaacaaggc
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| Protein seq | DPHERADAAHPPPPPHATRPKRILFQTPLLTLYGLLRLLAAGGVPRAGEAAPPRPPPAAAAAATPPAPPVLHPQRAPGGRLLLRRLRRSRPGVRGVLAGGAPGGDGRVRGGEHRVGERREGAQPRLQGAAAGGGRRRPRHRREEVRQAGMARPQAVRGGGERGGEAAAPEDGQPHRLLLRRRRAAPRRRVHAQRHPRQAPLPLGKQG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr10 | 23348517 | 23349319 | + | OsPr106_10g0018820.02 | OsPr106_10g0018820.01,OsPr106_10g0018820.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.946394 | 3.375299 | 11.282287 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0542800 | RBH | 3.331142 | 1.845349 | 4.116601 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g39670 | RBH | 2.252692 | 1.241151 | 1.059693 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0542800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018760 | RBH | 0.513930 | 15.643113 | 5.383455 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0019120 | RBH | 0.063382 | 1.609548 | 3.275455 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018540 | RBH | 1.334969 | 11.476139 | 11.569941 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0019090 | RBH | 0.299824 | 0.295178 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0002620 | RBH | 4.576838 | 20.706263 | 10.080806 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0349700 | RBH | 6.7606515 | 22.6553995 | 25.075154 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018680 | RBH | 0.129518 | 0.410356 | 1.273184 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0375000 | RBH | 8.700525 | 26.620318 | 11.8150655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0018430 | RBH | 0.355453 | 0.172632 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0018370 | RBH | 0.208697 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018890 | RBH | 3.156219 | 3.392925 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018480 | RBH | 0.687138 | 0.0 | 0.916307 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018990 | RBH | 0.114598 | 2.956648 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018760 | RBH | 0.464382 | 2.863439 | 3.516619 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018830 | RBH | 0.957677 | 10.462679 | 5.267209 |
