Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_10g0017570 | OGI:10061990 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr10:22310725-22315449 | ||||||||
| Gene Symbol | OsSK31/OsGSK9, OsSK31, OsGSK9, SK31, GSK9 | ||||||||||
| DNA seq | gagagaatttgattagacttctgaaacataaaggaaaggccattgcgtgcactaatcaaaattgacatgttccgggcaggctttcatgatagcaaagcaagcactttggaatctggatttctctcatcgcttgttcagggaaacaagtgtctacaaacaactgcaaactcagcatgtacctgattatacaacagcagcctagtagataaacgtctctggtggcacatgatgAaaatgtgcgagttgccgtgccaatctcagttgctcattacctcttggaattgcatcagaatgagccactgcctcgctctttatgtgaagtgatgatgaggaacttctatagcatccctctttccacatctagcaaggcagtgaatctagtctactcctgatccatccataagttatggatgtttgcatcaaccatctcactcacacctatccgctgttctaacaGcgaaattgtgttttcctgccattccgtttcacttcctcatatgttcaggaatgattcggtggactagctcaacaggaaggccttccaattctgtagaccaccattccaatggttggatgagggataagacaagggttataatagaaattcaacttttcaagtagagaaaattcttaccagcagctgagaagtcgaacaagggtggtaatgatcgtccatttgacaagcaggtcttgggatcccgcagttcatcaaagaatggatgagcacaagcatcaacctggaagaacagccaaatacgtttaatcagaacagtaatcaagattttttttgtttctttgtttcccaatctagggctaattagtagatacaaacataatatatcatatgtagtacaacactttcttatgaggaaattagattattgtgctcatgatgatccacctaataccgatctggttcaataattagttaaaatggctcaaatccaatattagtcttacagctgtgcaacgcaaatttggcgagtactgcagcaaccttgacacaagatcaacagcttcaggtggcatgcgcttaccaaaaagctgcagttggacaaattttgtgagaaggttacatcagtgtagaactaaagtgctatggaattagagatccaccaaccttgtgccatggatgagcttttatctgagggaatttgaattcagaatagtttggattcatgcacctgatttcttctctagttggtgtacccaaaatctataataagaaaaaaaacaagaaatggatcagtccacagacctaaattactgtctctaatggatgacaggagatagaaacctttattatttccaccagttgatcaacaccactttctccagggaacagaggctgcaattgtccatattcggaaaaaagatcagccaaagcaggaaagagccttgcagcacagcatccattattaacccccaacccccataaaatgaagtacttgcattcaaatggaaatgctgagttatgttatttattttttggtaatggtgtgacttaagataacagtaagttcgatacaaaattattcaatcaagtatatcctcgggtcatgaacttgactagaaaaaaactgagctgctagaatgattctatacctgaccaatcagaagctcagctagtacacaaccaacagaccagatatcaattgctgtggtatactctgtagctccAaatattagttcaggagccctataataccgcgagcaaatgtatgatatgttaggttcaccaggaacctgaaatggagtgtctgcattgtcaaatacatgtgcaacacagaatcaacatgctagcaggacaagaagaataccaatttcttagcacttccaaaatcacaaagcttcagttgatgtgtatgaggattgacctgaaaaatcgatcaacttgcaatgagacaattgcttgtacagcaggtttacttatatcacaacacataaacagctgaaaatattgcaggcaatcatgcttttgcacaagctgcaaatgcatgtttcaatcttaaactccatcatctgtttacaagtacccaaatagtaaaaaaggaaaaAGaacacttgcaaagcatgccctgaggaggggtgcctgataaaaatgagtctcatgatacataccagtagattttgaggtttaatatctcgatggcagacaccaacaacacgatggatatatgcaagggcacggcacatctatgaaaaatagtaaaacacattagaacaaataatttctttagaatcatggatttaacagtttgaaatgatctacaaagctaaaagtataacttatacagacctgatatgcatacagcttaacatgcaatatgggcacacgctggttcatccgattgtagtatttagcaacacgataaactgtctctgagacatattcaagtacaaggttgaggtaaacttcacccctctcagtcgtcgaaaagaagtgatgctttagctggaccacattaggatggtcaagcagttgcattgtttggagctctctgttcttatatcttttatcttgcagaaccttcttaatggcaacagtctctccagtttccaagcacttggcctgtttgtatcaataactggtcaataactttatgcccaaatattgtaaatttccatcatgacgaggagtagcgatacagaatggcaaaatgtgaaataatatacctgaaaaactacaccaaatgaaccagtaccaactacacgttctgccatgtatgataccttctgtaaaacaattagcacacattaatgtttgaccctgcctgtatgtaaagaatgtagtatagcaaacatccaagagaacgctactttttcctaagcaaaaatacacaaccatcaggaagaaataacacccgcaatactgatggaatgcattgcatcatagtgcgttttttttcttttttttggggggtagggggggaggggggttgaaggaaggaatctcccagttttcagggcatggagatattttcagtgctgatgcattgtattaatatccagcagatccagcagaacgcatgagagagaatggtgcagatAaaACATAATGGGTTGATGCATCACCTGCTTTGGCTTCCCATTTTGACCTCCAATTGATGTCACAATAATCTGACCTGTTTCTGTTCCATTTGCATTAACAATAACACCTTCAGATTCCTATAATCAGAAaaaactacgacataagtaacgaaagtagggtggcattatgtcaagaagtgacaagtcaaatggtatcaaaataaccttatcattatggccatcaactttatcatcacttattgtcatctcattcatttcttttggaagaatatccgcacctgcttcttcagttctaccaggattcttactagtagatgtgcttgcctcagcatctctatgagatgaagatgattcttggtctacgcgcataggtttgtcatcagttagatgtggctcaatgactatatctcctgctccatcctgatcgaattttggtcttttggtgccagaatcaccaccctaacaagaacaatataggttatcaactcaagctcataatagggaggagaaactaatcctactttccttattctcaagcacagaattcatattcatccgctagaagtcacatactatacctattagctaacattgtgcatcaaactcttccaccaattcattctacaatatacactgcccagtgcccaaTttttttattgtgattggtgagcaatgttttgttctcagtattatgagacatcaactacgtcatcaatcacatccttctgaaaagctgttcaacgctcaacaaagcaagactacgattaagggacatgaccAaagcagacccatcatgaaaagttacacattgaaaagcatttccttgataacttcccaatccaataaacctattattggcagattctctttttctagtaatgtcggacagctataccaccgtccagccatcgccaatgcagcatcaaatctcctcatgagcccatgaagcatgaacaccagggaataaatgttccacattgctacagctctgcagacaaaaacgctatcctcttgaaccaaactagacaaaataaatagtcgggcagaagcaaacaagctgtcgcctttaacctttattaaagcgcaagaatgctaaagAaaaaaagaaagAaaaaactaaagcgctttgccatgccacctggtagcgcgacacccttcacccaatgcaatgcccactttaccccccccccccccccccccccccaaatgcaaagacccaataacaacaacaacaacAccaaaccaaaaaccaacgcaacgaatccacgattcggtttccttccacacaaatgcggctgcgggaaaccgaatggcggcgcccggagatcgagcccgctcgctcgctcgcttcactcaccggatcggagacggacgagcggccggaggcgatgctcttgagccgccgcatcatatgcatcctccttctcgaacccacccgctgccgcagcacccccaccccaccacccccggatccctaaccctagccgcccccaccccggctcctcctcctcctccgccacccgcggccgcccccgctgagctccggagggcggggcgatctgggaggggaggaccctggaagcttctggaagcttcggggccccgtcgtcgcGggggggtggggtggggagaggcgagaggcggagaggcggaaaaaaaattgggagggagaga
More
|
||||||||||
| CDS seq | atgcatatgatgcggcggctcaagagcatcgcctccggccgctcgtccgtctccgatccgggtggtgattctggcaccaaaagaccaaaattcgatcaggatggagcaggagatatagtcattgagccacatctaactgatgacaaacctatgcgcgtagaccaagaatcatcttcatctcatagagatgctgaggcaagcacatctactagtaagaatcctggtagaactgaagaagcaggtgcggatattcttccaaaagaaatgaatgagatgacaataagtgatgataaagttgatggccataatgataagGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTATTGTGACATCAATTGGAGGTCAAAATGGGAAGCCAAAGCAGaaggtatcatacatggcagaacgtgtagttggtactggttcatttggtgtagtttttcaggccaagtgcttggaaactggagagactgttgccattaagaaggttctgcaagataaaagatataagaacagagagctccaaacaatgcaactgcttgaccatcctaatgtggtccagctaaagcatcacttcttttcgacgactgagaggggtgaagtttacctcaaccttgtacttgaatatgtctcagagacagtttatcgtgttgctaaatactacaatcggatgaaccagcgtgtgcccatattgcatgttaagctgtatgcatatcagatgtgccgtgcccttgcatatatccatcgtgttgttggtgtctgccatcgagatattaaacctcaaaatctactggtcaatcctcatacacatcaactgaagctttgtgattttggaagtgctaagaaattggttcctggtgaacctaacatatcatacatttgctcgcggtattatagggctcctgaactaatattTggagctacagagtataccacagcaattgatatctggtctgttggttgtgtactagctgagcttctgattggtcagcctctgttccctggagaaagtggtgttgatcaactggtggaaataataaagattttgggtacaccaactagagaagaaatcaggtgcatgaatccaaactattctgaattcaaattccctcagataaaagctcatccatggcacaagctttttggtaagcgcatgccacctgaagctgttgatcttgtgtcaaggttgctgcagtactcgccaaatttgcgttgcacagctgttgatgcttgtgctcatccattctttgatgaactgcgggatcccaagacctgcttgtcaaatggacgatcattaccacccttgttcgacttctcagctgctgaattggaaggccttcctgttgagctagtccaccgaatcattcctgaacatatgaggaagtga
More
|
||||||||||
| Protein seq | MHMMRRLKSIASGRSSVSDPGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYSEFKFPQIKAHPWHKLFGKRMPPEAVDLVSRLLQYSPNLRCTAVDACAHPFFDELRDPKTCLSNGRSLPPLFDFSAAELEGLPVELVHRIIPEHMRK |
||||||||||
| Function | Shaggy-related protein kinase theta [UniProtKB/Swiss-Prot:Q96287] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0017570 | OsPr106_10g0017570.02 | Chr10 | 22310733 | 22315423 | - | NAM | ||
| CDS seq | atgcatatgatgcggcggctcaagagcatcgcctccggccgctcgtccgtctccgatccgggtggtgattctggcaccaaaagaccaaaattcgatcaggatggagcaggagatatagtcattgagccacatctaactgatgacaaacctatgcgcgtagaccaagaatcatcttcatctcatagagatgctgaggcaagcacatctactagtaagaatcctggtagaactgaagaagcaggtgcggatattcttccaaaagaaatgaatgagatgacaataagtgatgataaagttgatggccataatgataagGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTATTGTGACATCAATTGGAGGTCAAAATGGGAAGCCAAAGCAGaaggtatcatacatggcagaacgtgtagttggtactggttcatttggtgtagtttttcaggccaagtgcttggaaactggagagactgttgccattaagaaggttctgcaagataaaagatataagaacagagagctccaaacaatgcaactgcttgaccatcctaatgtggtccagctaaagcatcacttcttttcgacgactgagaggggtgaagtttacctcaaccttgtacttgaatatgtctcagagacagtttatcgtgttgctaaatactacaatcggatgaaccagcgtgtgcccatattgcatgttaagctgtatgcatatcagatgtgccgtgcccttgcatatatccatcgtgttgttggtgtctgccatcgagatattaaacctcaaaatctactggtcaatcctcatacacatcaactgaagctttgtgattttggaagtgctaagaaattggtattcttcttggctcctgaactaatattTggagctacagagtataccacagcaattgatatctggtctgttggttgtgtactagctgagcttctgattggtcagcctctgttccctggagaaagtggtgttgatcaactggtggaaataataaagattttgggtacaccaactagagaagaaatcaggtgcatgaatccaaactattctgaattcaaattccctcagataaaagctcatccatggcacaagctttttggtaagcgcatgccacctgaagctgttgatcttgtgtcaaggttgctgcagtactcgccaaatttgcgttgcacagctgttgatgcttgtgctcatccattctttgatgaactgcgggatcccaagacctgcttgtcaaatggacgatcattaccacccttgttcgacttctcagctgctgaattggaaggccttcctgttgagctagtccaccgaatcattcctgaacatatgaggaagtga
More
|
|||||||
| Protein seq | MHMMRRLKSIASGRSSVSDPGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVFFLAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYSEFKFPQIKAHPWHKLFGKRMPPEAVDLVSRLLQYSPNLRCTAVDACAHPFFDELRDPKTCLSNGRSLPPLFDFSAAELEGLPVELVHRIIPEHMRK
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0017570 | OsPr106_10g0017570.01 | Chr10 | 22310733 | 22315449 | - | NAM | ||
| CDS seq | atgcatatgatgcggcggctcaagagcatcgcctccggccgctcgtccgtctccgatccgggtggtgattctggcaccaaaagaccaaaattcgatcaggatggagcaggagatatagtcattgagccacatctaactgatgacaaacctatgcgcgtagaccaagaatcatcttcatctcatagagatgctgaggcaagcacatctactagtaagaatcctggtagaactgaagaagcaggtgcggatattcttccaaaagaaatgaatgagatgacaataagtgatgataaagttgatggccataatgataagGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTATTGTGACATCAATTGGAGGTCAAAATGGGAAGCCAAAGCAGaaggtatcatacatggcagaacgtgtagttggtactggttcatttggtgtagtttttcaggccaagtgcttggaaactggagagactgttgccattaagaaggttctgcaagataaaagatataagaacagagagctccaaacaatgcaactgcttgaccatcctaatgtggtccagctaaagcatcacttcttttcgacgactgagaggggtgaagtttacctcaaccttgtacttgaatatgtctcagagacagtttatcgtgttgctaaatactacaatcggatgaaccagcgtgtgcccatattgcatgttaagctgtatgcatatcagatgtgccgtgcccttgcatatatccatcgtgttgttggtgtctgccatcgagatattaaacctcaaaatctactggtcaatcctcatacacatcaactgaagctttgtgattttggaagtgctaagaaattggttcctggtgaacctaacatatcatacatttgctcgcggtattatagggctcctgaactaatattTggagctacagagtataccacagcaattgatatctggtctgttggttgtgtactagctgagcttctgattggtcagcctctgttccctggagaaagtggtgttgatcaactggtggaaataataaagattttgggtacaccaactagagaagaaatcaggtgcatgaatccaaactattctgaattcaaattccctcagataaaagctcatccatggcacaagctttttggtaagcgcatgccacctgaagctgttgatcttgtgtcaaggttgctgcagtactcgccaaatttgcgttgcacagctgttgatgcttgtgctcatccattctttgatgaactgcgggatcccaagacctgcttgtcaaatggacgatcattaccacccttgttcgacttctcagctgctgaattggaaggccttcctgttgagctagtccaccgaatcattcctgaacatatgaggaagtga
More
|
|||||||
| Protein seq | MHMMRRLKSIASGRSSVSDPGGDSGTKRPKFDQDGAGDIVIEPHLTDDKPMRVDQESSSSHRDAEASTSTSKNPGRTEEAGADILPKEMNEMTISDDKVDGHNDKESEGVIVNANGTETGQIIVTSIGGQNGKPKQKVSYMAERVVGTGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMQLLDHPNVVQLKHHFFSTTERGEVYLNLVLEYVSETVYRVAKYYNRMNQRVPILHVKLYAYQMCRALAYIHRVVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLIGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYSEFKFPQIKAHPWHKLFGKRMPPEAVDLVSRLLQYSPNLRCTAVDACAHPFFDELRDPKTCLSNGRSLPPLFDFSAAELEGLPVELVHRIIPEHMRK
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0017570 | OsPr106_10g0017570.03 | Chr10 | 22310725 | 22311106 | - | IsoSeq | ||
| CDS seq | atgtggaaagagggatgctatagaagttcctcatcatcacttcacataaagagcgaggcagtggctcattctgatgcaattccaagaggtaatgagcaactgagattggcacggcaactcgcacatttTcatcatgtgccaccagagacgtttatc |
|||||||
| Protein seq | MWKEGCYRSSSSSLHIKSEAVAHSDAIPRGNEQLRLARQLAHFHHVPPETFI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.250980 | 29.780909 | 29.418278 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0521700 | RBH | 1.093458 | 1.113336 | 17.054752 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g37740 | RBH | 0.718538 | 0.727632 | 4.266048 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0521700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0017590 | RBH | 1.533872 | 51.686234 | 8.930202 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0017880 | RBH | 0.411774 | 3.868197 | 10.347313 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0017370 | RBH | 0.000000 | 10.317403 | 27.439407 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0017830 | RBH | 0.109855 | 0.401041 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0001510 | RBH | 4.989659 | 30.269932 | 13.895250 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0332500 | RBH | 9.551569 | 12.789679 | 95.1433065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0017480 | RBH | 0.313256 | 0.786586 | 8.640170 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0357200 | RBH | 23.3174375 | 19.800965 | 78.856659 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017280 | RBH | 0.396274 | 0.248779 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017100 | RBH | 0.337713 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0017710 | RBH | 1.097217 | 10.303242 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0017310 | RBH | 0.505588 | 0.0 | 2.216321 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0017770 | RBH | 0.296537 | 4.990344 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017410 | RBH | 0.146253 | 7.094603 | 5.182920 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0017610 | RBH | 1.141349 | 12.846066 | 31.324432 |
