Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsPr106_10g0016950 OGI:10060810 | 16/16 PR 106 | Os127742RS1 | Gramene(+IsoSeq) Chr10:21797936-21801761
Gene Symbol -
DNA seq

atgtctcctgattatgaatctgctgaagaattggatgttaagaaagctggtatttcatgtctctgaactctctctaactccctattctgctattgtatactgatgtgctctgcttataaacgttgatctttttgcaactttcttgttgactttgtacgcagttgattcgacaagtaggaatggatcagacctgttatttcttggaagaaaaggaatcgaaacaaactctctgcagaatcatagacaaaattgttctgccactagtcatcacacgactacaagtccacctactgagggtatgactcatggacaaggagaagaaggtaacattaatttgctttcaagaaatggatgcgatattcttgaacctagcattgatttgaacaatattgcatgtgaaacagcatcgtttgcatcgtcagaaattgtatcaggtgacatggaaccagaaaaagtatggcactacaaggatccttcaggaagtgttcagggcccattcacacttttacagctgtccaagtgggcagcttatttcccacgtgacctgagaatatggctaacatttgagagtgaacaaaactcactgcttttgaatgaagttctctcgaaacaacaaaaagatttcattcagccttctcccaaagttgacaataataggtcaacatgggaaggcgttgggcaagatagagttgactcaagtttgactggaaataactcttcctctcctattggttataatgtgatctactcttctcggttgcctagcccatctgctgactatcgtgcatcagctagagaaggcccaaaccttccgagtggaaccttgccattcatgacaagccagaaaacacaaaaggatcctcagatgttgcatggccaggcacagcatcagggtgattattcatgtaccatcccgtcAtctgtggtttcatatagaccagctggttctcatgatgagtggccccctcgaggcaacattggtgaatggaacaatagtcaggatagtggtggtatgtggagcccaaccacacctcacatgagtcggagcaatttggagcatcagcctgacaggtgtattacgaagaagcaattgcagaatgattccaaacgtaatacgctagcaggatctgcagaaaatctaaattcccaaatggattttggttcacagaaagtacacattcctactccacaacaacctgagagagatcttgccacttctgttggtacttcaaggcaatttgagtttaaaacttgtcatcaggaaggctctcactggagttcaacagcagactccattactcatgatgggcttcaattatctcttgcttcagcaaagcctgagagctgctctgcagtaaatcctattagagatggagattccagttcagcttctcgtgtgcctaatcaatcaggagctcatgtctatagcccaccacacccagctacaactaacttaagcaagagtgaggagactatgaatcagtgtaaatcgtgtgagcctgaagcatcaaataaatcacgcaagcctgacgcatcacatgctccagttaatcaacatcctaagcctgAaagtgatccagtgttacctgatactcaagattttgagcgcacgcatcctagcccaagtactgaacatgAcacaaaggagcaattgaaggatcaatcgaggtcaacatcagtagcacctgaagggtcgggtacaaaggcacatggacagtcttccatagcttttatatcagaagcatctggcccactttctagtaaaattgttggcttgcaaccacccaaggatacatcatttcttgttgaaagagatataaaagatggaggttccattacacaaacagagcaacaaaaagaagagagtacagcatttaagaaagagaacgtagctgttgatcctatctctgacagtgaagcaatagtatctggtgtgttggaatctttgacagagacatataatctgcatgaagaaaccgctttggaaaatttcacgccaacatctgccgaggaagaacaaccgcaatgctctacccctattgcattatctccttgggatgaaacaagtgactatcaaggtgaagctgttgattctgctctatgggGTgtccaagatgaccaaaacaatgaaatgtggtcgttgtcttcaccaacacctactctccaaccttcaggttaatggaaatacctttttttaatcactttatttgtttgcttgataatatttaatcttgagatattctacaggtattggagctgataccaaaggtgcttcctgtgctatagaagaggtgatagtagcccaaggaaatagtggtgttgttgaaccgtcaccagcactggagaaGaaaaggattgaaaaagtaccaagtgcttccatagatcgtggagtaccagagcaggtaatgctaacttaaatatttaaatactaggcaaaattcatcagcattatgcaaagagaatcctagcaacatgatgtacccaagttttaacagcagttttattttgacttgtttaggtaaaaccaaaatcagatgctgcattatctccAGAagagagcagaaaaccttcaggtttgcaactatcaagcacatatctacaagggagcacaaaatcttcaggtttgccaccgtcaggcacatctctagatgggggcatagaaccttcaggtttgctaccttcaggaacttctttggagtggggtacaaaaatttcaggtgtgcaatcctcggcctcatctctagaggggagcaaaaaggcttttgttaggcaaccatcaGgctcttcactagagggaaacacaaaagcgtcaggtaggcagccgtcaggttcatctatagaggggagtaagaaaccttctgataggcagccatcaggtgcatctcaagaggggaatacaaagccttcaggctggcaacaatctgtgtcgtctcttgaaggtggcacgaaaccttcaggctggaaaccttcaatttctatagacacgaatacaaaagcttcaggttggctgcgatcgagctcatctcctgatgtgggcagaaaagcttcagcattgcaatcatcaggttcttcgcctgttgcagggagctcaaaagcatcaggttggcagccatcacctcgcgagagctcgaaatctaagcctaattccacatGgggtgccggccaaagccgcaactcgtcttcgcaccaatcaacaacaccaacagctaaatactcatcagaaaccccaaggagacaaggaaacaacaacacaaattctgctggctggggagactctctcggaaacaagagctggcattcaccctcaggcaatgcgagcagccgaggcagccattctagccaccaccatgaccggcacaatcagagcagcgaaccatggcgtggtggctcaaatcattccaggagatcagatcatcgtcaagaacatggcaacggtggctcgtcgagatcatcgtcgtcgagggggcaatctcaaagggggatctgtagatactacgagaatggctactgcaggaagggcacttcctgccagttcctccaccgttgaaaacgccctcacatttttgtacagccctaaatgatttctcactcactccgtagtcagcacagaagtgacctttatttaaccttctcggcaccactcagctgttagtaagtatatacatatccatcagcacaggagtatgattaagttagcattttatgcttggaaaaacagccactgatgtacggccacgactgtagatccttctctttaggtgaatgatgcattttgattgatcctgttaggtttagtggaattatgagttcacccgctttaaatctc

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CDS seq

atgtctcctgattatgaatctgctgaagaattggatgttaagaaagctgttgattcgacaagtaggaatggatcagacctgttatttcttggaagaaaaggaatcgaaacaaactctctgcagaatcatagacaaaattgttctgccactagtcatcacacgactacaagtccacctactgagggtatgactcatggacaaggagaagaaggtaacattaatttgctttcaagaaatggatgcgatattcttgaacctagcattgatttgaacaatattgcatgtgaaacagcatcgtttgcatcgtcagaaattgtatcaggtgacatggaaccagaaaaagtatggcactacaaggatccttcaggaagtgttcagggcccattcacacttttacagctgtccaagtgggcagcttatttcccacgtgacctgagaatatggctaacatttgagagtgaacaaaactcactgcttttgaatgaagttctctcgaaacaacaaaaagatttcattcagccttctcccaaagttgacaataataggtcaacatgggaaggcgttgggcaagatagagttgactcaagtttgactggaaataactcttcctctcctattggttataatgtgatctactcttctcggttgcctagcccatctgctgactatcgtgcatcagctagagaaggcccaaaccttccgagtggaaccttgccattcatgacaagccagaaaacacaaaaggatcctcagatgttgcatggccaggcacagcatcagggtgattattcatgtaccatcccgtcAtctgtggtttcatatagaccagctggttctcatgatgagtggccccctcgaggcaacattggtgaatggaacaatagtcaggatagtggtggtatgtggagcccaaccacacctcacatgagtcggagcaatttggagcatcagcctgacaggtgtattacgaagaagcaattgcagaatgattccaaacgtaatacgctagcaggatctgcagaaaatctaaattcccaaatggattttggttcacagaaagtacacattcctactccacaacaacctgagagagatcttgccacttctgttggtacttcaaggcaatttgagtttaaaacttgtcatcaggaaggctctcactggagttcaacagcagactccattactcatgatgggcttcaattatctcttgcttcagcaaagcctgagagctgctctgcagtaaatcctattagagatggagattccagttcagcttctcgtgtgcctaatcaatcaggagctcatgtctatagcccaccacacccagctacaactaacttaagcaagagtgaggagactatgaatcagtgtaaatcgtgtgagcctgaagcatcaaataaatcacgcaagcctgacgcatcacatgctccagttaatcaacatcctaagcctgAaagtgatccagtgttacctgatactcaagattttgagcgcacgcatcctagcccaagtactgaacatgAcacaaaggagcaattgaaggatcaatcgaggtcaacatcagtagcacctgaagggtcgggtacaaaggcacatggacagtcttccatagcttttatatcagaagcatctggcccactttctagtaaaattgttggcttgcaaccacccaaggatacatcatttcttgttgaaagagatataaaagatggaggttccattacacaaacagagcaacaaaaagaagagagtacagcatttaagaaagagaacgtagctgttgatcctatctctgacagtgaagcaatagtatctggtgtgttggaatctttgacagagacatataatctgcatgaagaaaccgctttggaaaatttcacgccaacatctgccgaggaagaacaaccgcaatgctctacccctattgcattatctccttgggatgaaacaagtgactatcaaggtgaagctgttgattctgctctatgggGTgtccaagatgaccaaaacaatgaaatgtggtcgttgtcttcaccaacacctactctccaaccttcaggtattggagctgataccaaaggtgcttcctgtgctatagaagaggtgatagtagcccaaggaaatagtggtgttgttgaaccgtcaccagcactggagaaGaaaaggattgaaaaagtaccaagtgcttccatagatcgtggagtaccagagcaggtaaaaccaaaatcagatgctgcattatctccAGAagagagcagaaaaccttcaggtttgcaactatcaagcacatatctacaagggagcacaaaatcttcaggtttgccaccgtcaggcacatctctagatgggggcatagaaccttcaggtttgctaccttcaggaacttctttggagtggggtacaaaaatttcaggtgtgcaatcctcggcctcatctctagaggggagcaaaaaggcttttgttaggcaaccatcaGgctcttcactagagggaaacacaaaagcgtcaggtaggcagccgtcaggttcatctatagaggggagtaagaaaccttctgataggcagccatcaggtgcatctcaagaggggaatacaaagccttcaggctggcaacaatctgtgtcgtctcttgaaggtggcacgaaaccttcaggctggaaaccttcaatttctatagacacgaatacaaaagcttcaggttggctgcgatcgagctcatctcctgatgtgggcagaaaagcttcagcattgcaatcatcaggttcttcgcctgttgcagggagctcaaaagcatcaggttggcagccatcacctcgcgagagctcgaaatctaagcctaattccacatGgggtgccggccaaagccgcaactcgtcttcgcaccaatcaacaacaccaacagctaaatactcatcagaaaccccaaggagacaaggaaacaacaacacaaattctgctggctggggagactctctcggaaacaagagctggcattcaccctcaggcaatgcgagcagccgaggcagccattctagccaccaccatgaccggcacaatcagagcagcgaaccatggcgtggtggctcaaatcattccaggagatcagatcatcgtcaagaacatggcaacggtggctcgtcgagatcatcgtcgtcgagggggcaatctcaaagggggatctgtagatactacgagaatggctactgcaggaagggcacttcctgccagttcctccaccgttga

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Protein seq

MSPDYESAEELDVKKAVDSTSRNGSDLLFLGRKGIETNSLQNHRQNCSATSHHTTTSPPTEGMTHGQGEEGNINLLSRNGCDILEPSIDLNNIACETASFASSEIVSGDMEPEKVWHYKDPSGSVQGPFTLLQLSKWAAYFPRDLRIWLTFESEQNSLLLNEVLSKQQKDFIQPSPKVDNNRSTWEGVGQDRVDSSLTGNNSSSPIGYNVIYSSRLPSPSADYRASAREGPNLPSGTLPFMTSQKTQKDPQMLHGQAQHQGDYSCTIPSSVVSYRPAGSHDEWPPRGNIGEWNNSQDSGGMWSPTTPHMSRSNLEHQPDRCITKKQLQNDSKRNTLAGSAENLNSQMDFGSQKVHIPTPQQPERDLATSVGTSRQFEFKTCHQEGSHWSSTADSITHDGLQLSLASAKPESCSAVNPIRDGDSSSASRVPNQSGAHVYSPPHPATTNLSKSEETMNQCKSCEPEASNKSRKPDASHAPVNQHPKPESDPVLPDTQDFERTHPSPSTEHDTKEQLKDQSRSTSVAPEGSGTKAHGQSSIAFISEASGPLSSKIVGLQPPKDTSFLVERDIKDGGSITQTEQQKEESTAFKKENVAVDPISDSEAIVSGVLESLTETYNLHEETALENFTPTSAEEEQPQCSTPIALSPWDETSDYQGEAVDSALWGVQDDQNNEMWSLSSPTPTLQPSGIGADTKGASCAIEEVIVAQGNSGVVEPSPALEKKRIEKVPSASIDRGVPEQVKPKSDAALSPEESRKPSGLQLSSTYLQGSTKSSGLPPSGTSLDGGIEPSGLLPSGTSLEWGTKISGVQSSASSLEGSKKAFVRQPSGSSLEGNTKASGRQPSGSSIEGSKKPSDRQPSGASQEGNTKPSGWQQSVSSLEGGTKPSGWKPSISIDTNTKASGWLRSSSSPDVGRKASALQSSGSSPVAGSSKASGWQPSPRESSKSKPNSTWGAGQSRNSSSHQSTTPTAKYSSETPRRQGNNNTNSAGWGDSLGNKSWHSPSGNASSRGSHSSHHHDRHNQSSEPWRGGSNHSRRSDHRQEHGNGGSSRSSSSRGQSQRGICRYYENGYCRKGTSCQFLHR

Function Zinc finger CCCH domain-containing protein 20 [UniProtKB/Swiss-Prot:Q0DVU4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsPr106_10g0016950 OsPr106_10g0016950.01 Chr10 21797936 21801728 + NAM
CDS seq

atgtctcctgattatgaatctgctgaagaattggatgttaagaaagctgttgattcgacaagtaggaatggatcagacctgttatttcttggaagaaaaggaatcgaaacaaactctctgcagaatcatagacaaaattgttctgccactagtcatcacacgactacaagtccacctactgagggtatgactcatggacaaggagaagaaggtaacattaatttgctttcaagaaatggatgcgatattcttgaacctagcattgatttgaacaatattgcatgtgaaacagcatcgtttgcatcgtcagaaattgtatcaggtgacatggaaccagaaaaagtatggcactacaaggatccttcaggaagtgttcagggcccattcacacttttacagctgtccaagtgggcagcttatttcccacgtgacctgagaatatggctaacatttgagagtgaacaaaactcactgcttttgaatgaagttctctcgaaacaacaaaaagatttcattcagccttctcccaaagttgacaataataggtcaacatgggaaggcgttgggcaagatagagttgactcaagtttgactggaaataactcttcctctcctattggttataatgtgatctactcttctcggttgcctagcccatctgctgactatcgtgcatcagctagagaaggcccaaaccttccgagtggaaccttgccattcatgacaagccagaaaacacaaaaggatcctcagatgttgcatggccaggcacagcatcagggtgattattcatgtaccatcccgtcAtctgtggtttcatatagaccagctggttctcatgatgagtggccccctcgaggcaacattggtgaatggaacaatagtcaggatagtggtggtatgtggagcccaaccacacctcacatgagtcggagcaatttggagcatcagcctgacaggtgtattacgaagaagcaattgcagaatgattccaaacgtaatacgctagcaggatctgcagaaaatctaaattcccaaatggattttggttcacagaaagtacacattcctactccacaacaacctgagagagatcttgccacttctgttggtacttcaaggcaatttgagtttaaaacttgtcatcaggaaggctctcactggagttcaacagcagactccattactcatgatgggcttcaattatctcttgcttcagcaaagcctgagagctgctctgcagtaaatcctattagagatggagattccagttcagcttctcgtgtgcctaatcaatcaggagctcatgtctatagcccaccacacccagctacaactaacttaagcaagagtgaggagactatgaatcagtgtaaatcgtgtgagcctgaagcatcaaataaatcacgcaagcctgacgcatcacatgctccagttaatcaacatcctaagcctgAaagtgatccagtgttacctgatactcaagattttgagcgcacgcatcctagcccaagtactgaacatgAcacaaaggagcaattgaaggatcaatcgaggtcaacatcagtagcacctgaagggtcgggtacaaaggcacatggacagtcttccatagcttttatatcagaagcatctggcccactttctagtaaaattgttggcttgcaaccacccaaggatacatcatttcttgttgaaagagatataaaagatggaggttccattacacaaacagagcaacaaaaagaagagagtacagcatttaagaaagagaacgtagctgttgatcctatctctgacagtgaagcaatagtatctggtgtgttggaatctttgacagagacatataatctgcatgaagaaaccgctttggaaaatttcacgccaacatctgccgaggaagaacaaccgcaatgctctacccctattgcattatctccttgggatgaaacaagtgactatcaaggtgaagctgttgattctgctctatgggGTgtccaagatgaccaaaacaatgaaatgtggtcgttgtcttcaccaacacctactctccaaccttcaggtattggagctgataccaaaggtgcttcctgtgctatagaagaggtgatagtagcccaaggaaatagtggtgttgttgaaccgtcaccagcactggagaaGaaaaggattgaaaaagtaccaagtgcttccatagatcgtggagtaccagagcaggtaaaaccaaaatcagatgctgcattatctccAGAagagagcagaaaaccttcaggtttgcaactatcaagcacatatctacaagggagcacaaaatcttcaggtttgccaccgtcaggcacatctctagatgggggcatagaaccttcaggtttgctaccttcaggaacttctttggagtggggtacaaaaatttcaggtgtgcaatcctcggcctcatctctagaggggagcaaaaaggcttttgttaggcaaccatcaGgctcttcactagagggaaacacaaaagcgtcaggtaggcagccgtcaggttcatctatagaggggagtaagaaaccttctgataggcagccatcaggtgcatctcaagaggggaatacaaagccttcaggctggcaacaatctgtgtcgtctcttgaaggtggcacgaaaccttcaggctggaaaccttcaatttctatagacacgaatacaaaagcttcaggttggctgcgatcgagctcatctcctgatgtgggcagaaaagcttcagcattgcaatcatcaggttcttcgcctgttgcagggagctcaaaagcatcaggttggcagccatcacctcgcgagagctcgaaatctaagcctaattccacatGgggtgccggccaaagccgcaactcgtcttcgcaccaatcaacaacaccaacagctaaatactcatcagaaaccccaaggagacaaggaaacaacaacacaaattctgctggctggggagactctctcggaaacaagagctggcattcaccctcaggcaatgcgagcagccgaggcagccattctagccaccaccatgaccggcacaatcagagcagcgaaccatggcgtggtggctcaaatcattccaggagatcagatcatcgtcaagaacatggcaacggtggctcgtcgagatcatcgtcgtcgagggggcaatctcaaagggggatctgtagatactacgagaatggctactgcaggaagggcacttcctgccagttcctccaccgttga

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Protein seq

MSPDYESAEELDVKKAVDSTSRNGSDLLFLGRKGIETNSLQNHRQNCSATSHHTTTSPPTEGMTHGQGEEGNINLLSRNGCDILEPSIDLNNIACETASFASSEIVSGDMEPEKVWHYKDPSGSVQGPFTLLQLSKWAAYFPRDLRIWLTFESEQNSLLLNEVLSKQQKDFIQPSPKVDNNRSTWEGVGQDRVDSSLTGNNSSSPIGYNVIYSSRLPSPSADYRASAREGPNLPSGTLPFMTSQKTQKDPQMLHGQAQHQGDYSCTIPSSVVSYRPAGSHDEWPPRGNIGEWNNSQDSGGMWSPTTPHMSRSNLEHQPDRCITKKQLQNDSKRNTLAGSAENLNSQMDFGSQKVHIPTPQQPERDLATSVGTSRQFEFKTCHQEGSHWSSTADSITHDGLQLSLASAKPESCSAVNPIRDGDSSSASRVPNQSGAHVYSPPHPATTNLSKSEETMNQCKSCEPEASNKSRKPDASHAPVNQHPKPESDPVLPDTQDFERTHPSPSTEHDTKEQLKDQSRSTSVAPEGSGTKAHGQSSIAFISEASGPLSSKIVGLQPPKDTSFLVERDIKDGGSITQTEQQKEESTAFKKENVAVDPISDSEAIVSGVLESLTETYNLHEETALENFTPTSAEEEQPQCSTPIALSPWDETSDYQGEAVDSALWGVQDDQNNEMWSLSSPTPTLQPSGIGADTKGASCAIEEVIVAQGNSGVVEPSPALEKKRIEKVPSASIDRGVPEQVKPKSDAALSPEESRKPSGLQLSSTYLQGSTKSSGLPPSGTSLDGGIEPSGLLPSGTSLEWGTKISGVQSSASSLEGSKKAFVRQPSGSSLEGNTKASGRQPSGSSIEGSKKPSDRQPSGASQEGNTKPSGWQQSVSSLEGGTKPSGWKPSISIDTNTKASGWLRSSSSPDVGRKASALQSSGSSPVAGSSKASGWQPSPRESSKSKPNSTWGAGQSRNSSSHQSTTPTAKYSSETPRRQGNNNTNSAGWGDSLGNKSWHSPSGNASSRGSHSSHHHDRHNQSSEPWRGGSNHSRRSDHRQEHGNGGSSRSSSSRGQSQRGICRYYENGYCRKGTSCQFLHR

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Gene Transcript Chromosome Start End Strand Source
OsPr106_10g0016950 OsPr106_10g0016950.02 Chr10 21801615 21801761 + IsoSeq
CDS seq

agtatgattaagttagcattttatgcttggaaaaacagc

Protein seq

SMIKLAFYAWKNS

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 8.134995 21.944014 29.926519

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0511900 RBH 2.677139 2.875058 9.655941
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g36810 SBH 1.577413 1.283148 1.761917
Nipponbare | IRGSP 1.0 | RAP-db Os10g0511900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0016970 SBH 0.416665 10.294712 11.285263
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0017260 RBH 0.300494 2.826652 4.744826
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0016710 SBH 0.931954 4.945839 14.692227
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0017190 SBH 0.182888 0.302496 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0325300 SBH 7.164956 18.7672575 40.0189785
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0016870 SBH 0.333770 0.495784 2.183669
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0348300 RBH 12.8498945 27.5026645 47.523336
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0016650 RBH 0.093084 0.339622 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0016500 RBH 1.144881 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0017030 RBH 4.745494 13.911478 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0016710 SBH 0.485342 0.0 2.091673
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0017120 RBH 0.307543 5.683572 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G016760 SBH 0.473146 2.663270 4.397910
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0016940 SBH 0.547104 11.515459 9.976866
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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