Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_10g0012340 | OGI:10050950 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr10:17605407-17613467 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgccgccgccgcctcactctcctcccctcccgccgtacctcctccgccacctcgacggccgcgcgctctcctcccccctcctcgacccgctcatccgcgcggcctccgcctccgcctccgcgccgcaccacgccttctccctcttcctcctcctgctccgctccgcgctgcgcccttcccacctcaccttccccttcctcgcccgcgccgccgcgcgcctcgcctccccgcgcctcgcgcgcgcggtccacgcgcagccgctccgcagggggctcctcccccaagacctccacgtctccaactccctcgtccacatgtacgccgcctgcgcgctcccgggactcgcccgccgcctgttcgacgaaatcccccgcccgaaccacgtctcctggaacgccctcctcgacggctacgccaagtgccgcgacctccccgccgcgcgccgggtgttcgcgcggatgccccagcgggacgtggtgtcgtggagcgccatgatcgacgggtgcgtcaagtgcggggagcaccgggaggctcttgcggtgttcgagatgatggaggccaccgcggcgcgccatgatggggtcagggcgaacgatgtcaccatggtcagcgtgctgggggcttgcgcgcacctgggggaccttgtgcgggggaggaagatgcatcggtacctggaggagcacgggttcccgctgaacatccggcttgcgacctcccttgttgacatgtacgcgaaatgtggggcaatcgttgaggcgcttgaggttttccatgctgtgccggtggagagtactgatgttctgatatggaacgctgtgattggcgggctggcggtgcatgggatgagcagggagtcactgcagatgttccagaagatggagcatgctggggttgtgccggatgagatcacgtacctttgtctgttaagtgcttgcgtccatggtggtttggtggatgaggcttggaggttctttcgctcgcttgaagctcaacggttgagaccacatgtcgagcactatgcttgcctggtagatgtgcttggtcgggcaggccgcttggaggaagcatatggtgttgttaagagtatgccaatgaagccgagtgtttctgtacttggtgctctcttgaatgcctgtcatatccatggatgggtggagctgggggaggcagtcggcaggcagcttgtccatttgcagccagaccacgatggccggtacattggtctgtcgaatatctacgctgttgctaggcggtggcaagaggcaaaaaaagcgagaaaggtgatggaggagagaggcgtgaaaaaggttcctggatttagtgagattgatgttggcagagggctctgcagattcattgcccaagataagactcacccgggctcagcagagatttatgccttgctgaaacttattgcaatggatatgaaaatgaaggaagatgccactgttccagattatacctgtatgtactgctaataagatggttgcacctgtagatttctctctacaaaaattcagagatgcaatttgaatagtgcaagagtatttgtagctctcagttctggctgcatacactgaatttatgttgttttgaggaagttaactaacaggtattgcctagtcatgagcaaatatagaaaggcagatagtttgattttgaaaataaatgcatgttctgtttgctgatgaaaacagggatatagaactagaagtattgggggggggggggtgtgaattgtgaaaatactctggtatgtttccgagctgccttttactatcatctgatcaaggcattcaaacaacataaacaatctcaacgactgcatgtctgttgctgttacaacatgtagaagtataaagcatctcgatgagctttcttctagaatattttaacttatggcttcaacttcaacttatatggactatttgatcgtcagacaggacaaatggatatttcaagtttgtggagttgcggactattagcagaagatgggcctaaactataagaaccataccagagatctgatatgtcactcatacaatacaaatatagttggatcctggatcctctgattgtttgcacgatgctaaggtgaaactgcactctgattactcctgtttccattgtgcaacttgatttttccagtgctaataagttttctttagtacttaacattaggggcaattgtattcttaccatgtttgttagaattgtgatttgtgtcatcctaataaagtaacttccaaagaatgtcaagtgataTttgactaaaaaaaacaatgtccgcttatagaaaatggtatgcagagcaattaggaaacatggccagtgcatcctttacattctctttctgtttcttttattttagacagatctttcctcttattatcaaactaacatattcaaagatataatccattggcaaactctgctcctccattgttttactatgaaagaaaaaaaaaaaaactttgcatgaccgcatgtatacaaaatcaataaaatctcaagagatgtaccaaatggtaaacctagtgaagtggaactaatgagcttcagacattgcctgaaaattcttatttgctgtataaatacagctcagagtcattcagcaaaacaaagttaaactgtacagtgatatttctactccaaaaaggactacttgagctttgatttttctagctctggtaaaaaacatggagcctccaaccgtatagagaagaccacctgcgtgtgatccacaacattcagacctacccattatttagtaaatccttgctgttttctctgctagctaagaaagttagagccatgcaggaatatctcccatgtcattgtgttctgacaagtttgggtctccatctctgccatgtaaaccatctctgatcccctccagctttaatatcagcgaatcttctcttcaggtcaagcccttttcgtttcttctcatcacgcgtcagctctcttgacttgctgatcaggggatgctccggcgttccgaggtcagtgctatcgacgatcttctgcaccatctccagcacctcgctcatctttggccggtgcctggcgtggcgcacgaggcacttgtttgccaccgaggcgaggttggccgccgacttcaagctgtagctcccttcaagccttggatccattatgatttcaagcttctttgagtcagtggagtagggcttcacccactctatgaggttctgttcgcctctcggcctgttcctgtccagaggtcgccgaccggtaaggagctcgtagagcaccacgccgtagctccatatgtcgttcttgctgctgaggcgccctgtgtggatgtactctggagctgcatacccaatagtccccaccacctgttaaaagaagatttccagaagagacattagcaaacctacctagctgttcaaactatgaagacattgctagtggattgcagaatgttagaaaaacgtgtgatcatcactgatcaaatgtttggaattggagaacagccagaaagctactaagttgatgttaaccaatcagcaaaaaaaggcacctgccttttctgaccggtccttgtgcactactagcacacagactaaccgaaagtgcctatccatgtcctgtgttgggttggttttttcctatcactgtgttgtgtcaatttgttgtttttgcgggccactaactggttgatcagatcaagatgacaaaatggttctatgttggaacagtaacaggctaacagccattgtgtttgctgcttgtcttcaggaaaggaagaactacacccaaggtgttctaccacggattgtctaccgagcaacatcgaatgtttaacctctgaaatcagtcatatcattcaaaatgcctgcattttgcagttgagaacaggtgccctaaggaactctaaatgctaggcaaaaaaatgataggttttcttgtcacgtaccgcagtggagacatggctgccatcctgagataccagtctagccaatccgaagtctgacagcttcgcgttccagttctcgtcgatcagaatgttggaaggcttcagatcacgaaatattatctggaagatcatcgcatcgcatcaatgcaggtgatgtcaggccagccagtaattaatcaaacaagtgaggcagagcaatcagggcaatttctgaatttctgatactgcaccttgatttcagattcttcatggagatacttcaagccgcgcgcggtgtcgagcgccaccctgagccgcatcgcccacgacgccggcctcggcgacctcgacgacaggtgatccgccaggctcccgttgggcatgaactcgtagacgagcagcagctgcatccccctctcgtcgtcctcggcgcagtacccgatgagcttcaccaggttcggatgatccaccaccccaagaacgttcacctccgtcacccactccttatgcccctgcgttcaccatcaccaaattcaacaacattatcatcaaattcttgctttacttgctcgtgttcagaatcaactcaacgagctctgataccatgttgagaattgttgattacctgcaggcctttgcggccgagctgcttgatggcgacctcgacgctccggcgaggctcgaggacgctgcggatggtgccgcggtagacgcagccgaagccgccctctccgagcaccagcgagcggctgaacccgcgggtggcgctcttgagctcctggaaggtgaagatgcggaggttgttgctcgcgcgctgcggcagcgacagctgccggtaccggccgaacgactcggcgctgaTCtccgacgacacgttcagggagcactccgaccccgaccgccgcgcgtcgcggtccgtcgacgtgctgctgttcgaccgcgccgacagcgaccgcgtcgtcgctgccgcggccgccaccgctgacgaccggccacgccgctcctccctctcccagccggcgaacccgaagcactgcatcgccttcgacatggtccccggagaagatgacgacgcctctcctgctctgcaccaacgtcgcgggcgccggaagaaaggtcagtgactcagttcatgcgcaacattaatcattaacgacaactgaaatgggaaaagaaatagttctaatcaagccggaaaggaaaagaaactaaaagcttttcgtagtttagtttgccactgatcaactttatgctttcctaagaaacaaaacatttctcctttcaatcttaattacaTttggtcggccatcctttcgaccgacccggcAaaaaaaaaaaaaggaagaatggaaaagaaacaaaagatatcatcacatctcattttaaatggaaaagggcaaataaatttaggttggcagagaaaaggatcgatcaccaatcacacaaccagcaaatctcaagggagagaaaagaagaaaacaattgatgatcagccatgggcagaagaactcccatcgtcgtcaatggccgtcgtaacccacctccaacaaacgaatcatcccccactcaatcaaccaagcaactaaccaaccaaaagcttcatccctctctttgctcacctgtgtggcatgtgctacgagctcagccgcctccgcatggagaagacgacgacctcggatctcgcctcacagggaagacgagtaaggagagaaagagagagagagagaggaagaagatgatgcactttgtgtgcggctaacgggtcaacaatggaggagggaggggtttgggttgggttaaccgggtactgtccagatcgtctggttgtctctttccgtttggttggtctctttggttgctttggggtgagagaaatgtgaggggattcagacagcgagagggcttaaatgtgtggaaaacgaggtgtagagacgaagcagaggccaaggagttgaacaagatgtactaagaagaagagaagaactttcttctctaagaggctggaagctaatggaaatggatgcagcggtggtggttttcattaggaccagccactgagatggactactaatggatggatgagttttttcttttgctgttggctgtggcaactcaatggcacgtaaaacgagctaatccattaagggcctctttgatttgtaggaaaaatgtaggaaTtttggaggatttcaatcctatggaaaaaaaatcttacgaaggcttttaaaacaaaggatcgaatcctatccaatcctttaaaattcctatggaataggtaatcctatgcacattttggaggaaagttagcaagaggtctaacctcttggaacattttctctgagtctatctctctcatctgattcctgtgttttttctgtggtctaatcaaacgaccattcctgtgttttgcaatcctctgttttacaattgtattcctatcagaatcctgtgtttttcctattcctctgttttttcattcctatgattcaaaggggccctaacacataactaattaaatgtcaattattacatacttgaaaaatgtgtttatttgaatttttaaaagaaacttctatattaaaatgtttgaaaaaaataccgtttaacaatttataaaaagttaaacaatttataaaacgtactaacagaggagtaagttaacaatttataaaacgtactgatagaagagtaagttgtcactcccaaacaacccaaactaaggtattagaaagcctctgcttttctgcagtaccagccgagaggataaatttgatactctgatgcttttttcattaccaagttgcttcgaagtctatctctgcctctctgggctgggagatatatcacgttttttaaaaaaacattagtaccacatcagatggcatagaatttcttttgcagtactttttgaggggtacctgttctcagtggaagtaataaaagacatgtcctgttgcttcaaaatttcttggctcaacatatagcacgtggtcagtagttgtgaagtcatgggtggaatattaacatcaccgtacctgatcagatatgctaagcatacatagatttgtgagatagtaacatgcactgctgttttagttgtgatggttaacgacatgacctcacagttgtttgtgttagccatttaatttttttatatccactagtttttgttactagttattgtttgtatagaaataaaacataaaccatatttttggagaattttcacccagctgctgcaaattgcacagaataaacaatgctatcagtaatgtgagagctgcttagctttattttggccacctaatcgtaaagcgcaaagctttgtgatttagagctaaactatctttggctctcaattaacaatgatggtttgtccttagatatgcacaaatagagaaataataatacgcgtgctgtgctgttccctaaatctttttcataaattataaagcacgacgtgagacaccatgcatgtgaacaatgaacctagccacttgtccattgatgaaacttgcaggcatcaactttctcatccaatgaacacttgccaaggaggtcctctttttgttgagtgggtgacagatctaagaaagataatattcttacaaggctaggagagctaccacaccaactataattaattaggttcagcagcaatcagtggagactaccaaTtttttttaattactggtaagagactgttccattcagattcagtcaaattctctgttagtaaagtaccttagtaattacgtccagtgatttcaggtaacttacctagttgatgcatgactgaatggattggatCccagatgacagtactcgcctcaggagaaaaacttgagctatgatctgacttggttatcgcaagctgcggcaggtaacaacaacgattatgaccgctaataatcaaccagcaaagtcaaaactgctatctgttccatcttttcacctttgctttcaatgactttcccctcgtgtttttgtgttcatctctgctgatattttctctttgacactggaaatttttggcattcctgcaactcacctttgatgtcgaaatgtatgctattgaggaaaacatactgtttaaccctgttcttggttgatcatactattctctgaacagatc
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| CDS seq | atgccgccgccgccgcctcactctcctcccctcccgccgtacctcctccgccacctcgacggccgcgcgctctcctcccccctcctcgacccgctcatccgcgcggcctccgcctccgcctccgcgccgcaccacgccttctccctcttcctcctcctgctccgctccgcgctgcgcccttcccacctcaccttccccttcctcgcccgcgccgccgcgcgcctcgcctccccgcgcctcgcgcgcgcggtccacgcgcagccgctccgcagggggctcctcccccaagacctccacgtctccaactccctcgtccacatgtacgccgcctgcgcgctcccgggactcgcccgccgcctgttcgacgaaatcccccgcccgaaccacgtctcctggaacgccctcctcgacggctacgccaagtgccgcgacctccccgccgcgcgccgggtgttcgcgcggatgccccagcgggacgtggtgtcgtggagcgccatgatcgacgggtgcgtcaagtgcggggagcaccgggaggctcttgcggtgttcgagatgatggaggccaccgcggcgcgccatgatggggtcagggcgaacgatgtcaccatggtcagcgtgctgggggcttgcgcgcacctgggggaccttgtgcgggggaggaagatgcatcggtacctggaggagcacgggttcccgctgaacatccggcttgcgacctcccttgttgacatgtacgcgaaatgtggggcaatcgttgaggcgcttgaggttttccatgctgtgccggtggagagtactgatgttctgatatggaacgctgtgattggcgggctggcggtgcatgggatgagcagggagtcactgcagatgttccagaagatggagcatgctggggttgtgccggatgagatcacgtacctttgtctgttaagtgcttgcgtccatggtggtttggtggatgaggcttggaggttctttcgctcgcttgaagctcaacggttgagaccacatgtcgagcactatgcttgcctggtagatgtgcttggtcgggcaggccgcttggaggaagcatatggtgttgttaagagtatgccaatgaagccgagtgtttctgtacttggtgctctcttgaatgcctgtcatatccatggatgggtggagctgggggaggcagtcggcaggcagcttgtccatttgcagccagaccacgatggccggtacattggtctgtcgaatatctacgctgttgctaggcggtggcaagaggcaaaaaaagcgagaaaggtgatggaggagagaggcgtgaaaaaggttcctggatttagtgagattgatgttggcagagggctctgcagattcattgcccaagataagactcacccgggctcagcagagatttatgccttgctgaaacttattgcaatggatatgaaaatgaaggaagatgccactgttccagattatacctgtatgtcaagcccttttcgtttcttctcatcacgcgtcagctctcttgacttgctgatcaggggatgctccggcgttccgaggtcagtgctatcgacgatcttctgcaccatctccagcacctcgctcatctttggccggtgcctggcgtggcgcacgaggcacttgtttgccaccgaggcgaggttggccgccgacttcaagcttggagtagggcttcacccactctatgaggttctgttcgcctctcggcctgttcctgtccagaggtcgccgaccggtaaggagctcgtagagcaccacgccgtagctccatatgtcgttcttgctgctgaggcgccctattcttcatggagatacttcaagccgcgcgcggtgtcgagcgccaccctgagccgcatcgcccacgacgccggcctcggcgacctcgacgacaggcctttgcggccgagctgcttgatggcgacctcgacgctccggcgaggctcgaggacgctgcggatgacgcagccgaagccgccctctccgagcaccagcgagcggctgaacccgcgggtggcgctcttgagctcctggaaggtgaagatgcggaggttgttgctcgcgcgctgcggcagcgacagctgccggtaccggccgaacgactcggcgctgaTCtccgacgacacgttcagggagcactccgaccccgaccgccgcgcgtcgcggtccgtcgacgtgctgctgttcgaccgcgccgacagcgaccgcgtcgtcgctgccgcggccgccaccgctgacgaccggccacgccgctcctccctctcccagccggcgaacccgaagcactgcatcgccttcgacatggtccccggagaagatgacgacgcctctcctgctctgcaccaacgtcgcgggcgccggaagaaaggtcagtga
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| Protein seq | MPPPPPHSPPLPPYLLRHLDGRALSSPLLDPLIRAASASASAPHHAFSLFLLLLRSALRPSHLTFPFLARAAARLASPRLARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPDEITYLCLLSACVHGGLVDEAWRFFRSLEAQRLRPHVEHYACLVDVLGRAGRLEEAYGVVKSMPMKPSVSVLGALLNACHIHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDVGRGLCRFIAQDKTHPGSAEIYALLKLIAMDMKMKEDATVPDYTCMSSPFRFFSSRVSSLDLLIRGCSGVPRSVLSTIFCTISSTSLIFGRCLAWRTRHLFATEARLAADFKLGVGLHPLYEVLFASRPVPVQRSPTGKELVEHHAVAPYVVLAAEAPYSSWRYFKPRAVSSATLSRIAHDAGLGDLDDRPLRPSCLMATSTLRRGSRTLRMTQPKPPSPSTSERLNPRVALLSSWKVKMRRLLLARCGSDSCRYRPNDSALISDDTFREHSDPDRRASRSVDVLLFDRADSDRVVAAAAATADDRPRRSSLSQPANPKHCIAFDMVPGEDDDASPALHQRRGRRKKGQ |
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| Function | Pentatricopeptide repeat-containing protein At5g08305 [UniProtKB/Swiss-Prot:P0C8Q7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0012340 | OsPr106_10g0012340.03 | Chr10 | 17605407 | 17610456 | + | NAM | ||
| CDS seq | atgccgccgccgccgcctcactctcctcccctcccgccgtacctcctccgccacctcgacggccgcgcgctctcctcccccctcctcgacccgctcatccgcgcggcctccgcctccgcctccgcgccgcaccacgccttctccctcttcctcctcctgctccgctccgcgctgcgcccttcccacctcaccttccccttcctcgcccgcgccgccgcgcgcctcgcctccccgcgcctcgcgcgcgcggtccacgcgcagccgctccgcagggggctcctcccccaagacctccacgtctccaactccctcgtccacatgtacgccgcctgcgcgctcccgggactcgcccgccgcctgttcgacgaaatcccccgcccgaaccacgtctcctggaacgccctcctcgacggctacgccaagtgccgcgacctccccgccgcgcgccgggtgttcgcgcggatgccccagcgggacgtggtgtcgtggagcgccatgatcgacgggtgcgtcaagtgcggggagcaccgggaggctcttgcggtgttcgagatgatggaggccaccgcggcgcgccatgatggggtcagggcgaacgatgtcaccatggtcagcgtgctgggggcttgcgcgcacctgggggaccttgtgcgggggaggaagatgcatcggtacctggaggagcacgggttcccgctgaacatccggcttgcgacctcccttgttgacatgtacgcgaaatgtggggcaatcgttgaggcgcttgaggttttccatgctgtgccggtggagagtactgatgttctgatatggaacgctgtgattggcgggctggcggtgcatgggatgagcagggagtcactgcagatgttccagaagatggagcatgctggggttgtgccggatgagatcacgtacctttgtctgttaagtgcttgcgtccatggtggtttggtggatgaggcttggaggttctttcgctcgcttgaagctcaacggttgagaccacatgtcgagcactatgcttgcctggtagatgtgcttggtcgggcaggccgcttggaggaagcatatggtgttgttaagagtatgccaatgaagccgagtgtttctgtacttggtgctctcttgaatgcctgtcatatccatggatgggtggagctgggggaggcagtcggcaggcagcttgtccatttgcagccagaccacgatggccggtacattggtctgtcgaatatctacgctgttgctaggcggtggcaagaggcaaaaaaagcgagaaaggtgatggaggagagaggcgtgaaaaaggttcctggatttagtgagattgatgttggcagagggctctgcagattcattgcccaagataagactcacccgggctcagcagagatttatgccttgctgaaacttattgcaatggatatgaaaatgaaggaagatgccactgttccagattatacctattcttcatggagatacttcaagccgcgcgcggtgtcgagcgccaccctgagccgcatcgcccacgacgccggcctcggcgacctcgacgacaggcctttgcggccgagctgcttgatggcgacctcgacgctccggcgaggctcgaggacgctgcggatgacgcagccgaagccgccctctccgagcaccagcgagcggctgaacccgcgggtggcgctcttgagctcctggaaggtgaagatgcggaggttgttgctcgcgcgctgcggcagcgacagctgccggtaccggccgaacgactcggcgctgaTCtccgacgacacgttcagggagcactccgaccccgaccgccgcgcgtcgcggtccgtcgacgtgctgctgttcgaccgcgccgacagcgaccgcgtcgtcgctgccgcggccgccaccgctgacgaccggccacgccgctcctccctctcccagccggcgaacccgaagcactgcatcgccttcgacatggtccccggagaagatgacgacgcctctcctgctctgcaccaacgtcgcgggcgccggaagaaaggtcagtga
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| Protein seq | MPPPPPHSPPLPPYLLRHLDGRALSSPLLDPLIRAASASASAPHHAFSLFLLLLRSALRPSHLTFPFLARAAARLASPRLARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPDEITYLCLLSACVHGGLVDEAWRFFRSLEAQRLRPHVEHYACLVDVLGRAGRLEEAYGVVKSMPMKPSVSVLGALLNACHIHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDVGRGLCRFIAQDKTHPGSAEIYALLKLIAMDMKMKEDATVPDYTYSSWRYFKPRAVSSATLSRIAHDAGLGDLDDRPLRPSCLMATSTLRRGSRTLRMTQPKPPSPSTSERLNPRVALLSSWKVKMRRLLLARCGSDSCRYRPNDSALISDDTFREHSDPDRRASRSVDVLLFDRADSDRVVAAAAATADDRPRRSSLSQPANPKHCIAFDMVPGEDDDASPALHQRRGRRKKGQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0012340 | OsPr106_10g0012340.01 | Chr10 | 17605407 | 17613467 | + | NAM | ||
| CDS seq | atgccgccgccgccgcctcactctcctcccctcccgccgtacctcctccgccacctcgacggccgcgcgctctcctcccccctcctcgacccgctcatccgcgcggcctccgcctccgcctccgcgccgcaccacgccttctccctcttcctcctcctgctccgctccgcgctgcgcccttcccacctcaccttccccttcctcgcccgcgccgccgcgcgcctcgcctccccgcgcctcgcgcgcgcggtccacgcgcagccgctccgcagggggctcctcccccaagacctccacgtctccaactccctcgtccacatgtacgccgcctgcgcgctcccgggactcgcccgccgcctgttcgacgaaatcccccgcccgaaccacgtctcctggaacgccctcctcgacggctacgccaagtgccgcgacctccccgccgcgcgccgggtgttcgcgcggatgccccagcgggacgtggtgtcgtggagcgccatgatcgacgggtgcgtcaagtgcggggagcaccgggaggctcttgcggtgttcgagatgatggaggccaccgcggcgcgccatgatggggtcagggcgaacgatgtcaccatggtcagcgtgctgggggcttgcgcgcacctgggggaccttgtgcgggggaggaagatgcatcggtacctggaggagcacgggttcccgctgaacatccggcttgcgacctcccttgttgacatgtacgcgaaatgtggggcaatcgttgaggcgcttgaggttttccatgctgtgccggtggagagtactgatgttctgatatggaacgctgtgattggcgggctggcggtgcatgggatgagcagggagtcactgcagatgttccagaagatggagcatgctggggttgtgccggatgagatcacgtacctttgtctgttaagtgcttgcgtccatggtggtttggtggatgaggcttggaggttctttcgctcgcttgaagctcaacggttgagaccacatgtcgagcactatgcttgcctggtagatgtgcttggtcgggcaggccgcttggaggaagcatatggtgttgttaagagtatgccaatgaagccgagtgtttctgtacttggtgctctcttgaatgcctgtcatatccatggatgggtggagctgggggaggcagtcggcaggcagcttgtccatttgcagccagaccacgatggccggtacattggtctgtcgaatatctacgctgttgctaggcggtggcaagaggcaaaaaaagcgagaaaggtgatggaggagagaggcgtgaaaaaggttcctggatttagtgagattgatgttggcagagggctctgcagattcattgcccaagataagactcacccgggctcagcagagatttatgccttgctgaaacttattgcaatggatatgaaaatgaaggaagatgccactgttccagattatacctgtatgtcaagcccttttcgtttcttctcatcacgcgtcagctctcttgacttgctgatcaggggatgctccggcgttccgaggtcagtgctatcgacgatcttctgcaccatctccagcacctcgctcatctttggccggtgcctggcgtggcgcacgaggcacttgtttgccaccgaggcgaggttggccgccgacttcaagctgtag
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| Protein seq | MPPPPPHSPPLPPYLLRHLDGRALSSPLLDPLIRAASASASAPHHAFSLFLLLLRSALRPSHLTFPFLARAAARLASPRLARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPDEITYLCLLSACVHGGLVDEAWRFFRSLEAQRLRPHVEHYACLVDVLGRAGRLEEAYGVVKSMPMKPSVSVLGALLNACHIHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDVGRGLCRFIAQDKTHPGSAEIYALLKLIAMDMKMKEDATVPDYTCMSSPFRFFSSRVSSLDLLIRGCSGVPRSVLSTIFCTISSTSLIFGRCLAWRTRHLFATEARLAADFKL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0012340 | OsPr106_10g0012340.02 | Chr10 | 17605407 | 17610456 | + | NAM | ||
| CDS seq | atgccgccgccgccgcctcactctcctcccctcccgccgtacctcctccgccacctcgacggccgcgcgctctcctcccccctcctcgacccgctcatccgcgcggcctccgcctccgcctccgcgccgcaccacgccttctccctcttcctcctcctgctccgctccgcgctgcgcccttcccacctcaccttccccttcctcgcccgcgccgccgcgcgcctcgcctccccgcgcctcgcgcgcgcggtccacgcgcagccgctccgcagggggctcctcccccaagacctccacgtctccaactccctcgtccacatgtacgccgcctgcgcgctcccgggactcgcccgccgcctgttcgacgaaatcccccgcccgaaccacgtctcctggaacgccctcctcgacggctacgccaagtgccgcgacctccccgccgcgcgccgggtgttcgcgcggatgccccagcgggacgtggtgtcgtggagcgccatgatcgacgggtgcgtcaagtgcggggagcaccgggaggctcttgcggtgttcgagatgatggaggccaccgcggcgcgccatgatggggtcagggcgaacgatgtcaccatggtcagcgtgctgggggcttgcgcgcacctgggggaccttgtgcgggggaggaagatgcatcggtacctggaggagcacgggttcccgctgaacatccggcttgcgacctcccttgttgacatgtacgcgaaatgtggggcaatcgttgaggcgcttgaggttttccatgctgtgccggtggagagtactgatgttctgatatggaacgctgtgattggcgggctggcggtgcatgggatgagcagggagtcactgcagatgttccagaagatggagcatgctggggttgtgccggatgagatcacgtacctttgtctgttaagtgcttgcgtccatggtggtttggtggatgaggcttggaggttctttcgctcgcttgaagctcaacggttgagaccacatgtcgagcactatgcttgcctggtagatgtgcttggtcgggcaggccgcttggaggaagcatatggtgttgttaagagtatgccaatgaagccgagtgtttctgtacttggtgctctcttgaatgcctgtcatatccatggatgggtggagctgggggaggcagtcggcaggcagcttgtccatttgcagccagaccacgatggccggtacattggtctgtcgaatatctacgctgttgctaggcggtggcaagaggcaaaaaaagcgagaaaggtgatggaggagagaggcgtgaaaaaggttcctggatttagtgagattgatgttggcagagggctctgcagattcattgcccaagataagactcacccgggctcagcagagatttatgccttgctgaaacttattgcaatggatatgaaaatgaaggaagatgccactgttccagattatacctgtatgtcaagcccttttcgtttcttctcatcacgcgtcagctctcttgacttgctgatcaggggatgctccggcgttccgaggtcagtgctatcgacgatcttctgcaccatctccagcacctcgctcatctttggccggtgcctggcgtggcgcacgaggcacttgtttgccaccgaggcgaggttggccgccgacttcaagcttggagtagggcttcacccactctatgaggttctgttcgcctctcggcctgttcctgtccagaggtcgccgaccggtaaggagctcgtagagcaccacgccgtagctccatatgtcgttcttgctgctgaggcgccctattcttcatggagatacttcaagccgcgcgcggtgtcgagcgccaccctgagccgcatcgcccacgacgccggcctcggcgacctcgacgacaggcctttgcggccgagctgcttgatggcgacctcgacgctccggcgaggctcgaggacgctgcggatgacgcagccgaagccgccctctccgagcaccagcgagcggctgaacccgcgggtggcgctcttgagctcctggaaggtgaagatgcggaggttgttgctcgcgcgctgcggcagcgacagctgccggtaccggccgaacgactcggcgctgaTCtccgacgacacgttcagggagcactccgaccccgaccgccgcgcgtcgcggtccgtcgacgtgctgctgttcgaccgcgccgacagcgaccgcgtcgtcgctgccgcggccgccaccgctgacgaccggccacgccgctcctccctctcccagccggcgaacccgaagcactgcatcgccttcgacatggtccccggagaagatgacgacgcctctcctgctctgcaccaacgtcgcgggcgccggaagaaaggtcagtga
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| Protein seq | MPPPPPHSPPLPPYLLRHLDGRALSSPLLDPLIRAASASASAPHHAFSLFLLLLRSALRPSHLTFPFLARAAARLASPRLARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPDEITYLCLLSACVHGGLVDEAWRFFRSLEAQRLRPHVEHYACLVDVLGRAGRLEEAYGVVKSMPMKPSVSVLGALLNACHIHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDVGRGLCRFIAQDKTHPGSAEIYALLKLIAMDMKMKEDATVPDYTCMSSPFRFFSSRVSSLDLLIRGCSGVPRSVLSTIFCTISSTSLIFGRCLAWRTRHLFATEARLAADFKLGVGLHPLYEVLFASRPVPVQRSPTGKELVEHHAVAPYVVLAAEAPYSSWRYFKPRAVSSATLSRIAHDAGLGDLDDRPLRPSCLMATSTLRRGSRTLRMTQPKPPSPSTSERLNPRVALLSSWKVKMRRLLLARCGSDSCRYRPNDSALISDDTFREHSDPDRRASRSVDVLLFDRADSDRVVAAAAATADDRPRRSSLSQPANPKHCIAFDMVPGEDDDASPALHQRRGRRKKGQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0012340 | OsPr106_10g0012340.04 | Chr10 | 17609116 | 17610456 | + | NAM | ||
| CDS seq | atggttctatgttggaacagtaacaggctaacagccattgtgtttgctgcttgtcttcaggaaaggaagaactacacccaagattcttcatggagatacttcaagccgcgcgcggtgtcgagcgccaccctgagccgcatcgcccacgacgccggcctcggcgacctcgacgacaggcctttgcggccgagctgcttgatggcgacctcgacgctccggcgaggctcgaggacgctgcggatgacgcagccgaagccgccctctccgagcaccagcgagcggctgaacccgcgggtggcgctcttgagctcctggaaggtgaagatgcggaggttgttgctcgcgcgctgcggcagcgacagctgccggtaccggccgaacgactcggcgctgaTCtccgacgacacgttcagggagcactccgaccccgaccgccgcgcgtcgcggtccgtcgacgtgctgctgttcgaccgcgccgacagcgaccgcgtcgtcgctgccgcggccgccaccgctgacgaccggccacgccgctcctccctctcccagccggcgaacccgaagcactgcatcgccttcgacatggtccccggagaagatgacgacgcctctcctgctctgcaccaacgtcgcgggcgccggaagaaaggtcagtga
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| Protein seq | MVLCWNSNRLTAIVFAACLQERKNYTQDSSWRYFKPRAVSSATLSRIAHDAGLGDLDDRPLRPSCLMATSTLRRGSRTLRMTQPKPPSPSTSERLNPRVALLSSWKVKMRRLLLARCGSDSCRYRPNDSALISDDTFREHSDPDRRASRSVDVLLFDRADSDRVVAAAAATADDRPRRSSLSQPANPKHCIAFDMVPGEDDDASPALHQRRGRRKKGQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr10 | 17609688 | 17609964 | + | OsPr106_10g0012340.01 | OsPr106_10g0012340.03,OsPr106_10g0012340.04,OsPr106_10g0012340.01,OsPr106_10g0012340.02 | All |
| AF | Chr10 | 17605407 | 17609595 | + | OsPr106_10g0012340.03 | OsPr106_10g0012340.03,OsPr106_10g0012340.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.350116 | 0.893654 | 0.292638 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0442700 | RBH | 0.198057 | 0.212852 | 0.428705 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g30590 | RBH | 0.104323 | 0.133227 | 0.096638 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0442700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012380 | RBH | 0.367477 | 0.0 | 1.123818 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012590 | RBH | 0.284846 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012320 | RBH | 0.132425 | 0.000000 | 1.178227 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012590 | RBH | 0.042752 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012430 | RBH | 0.614340 | 4.052928 | 2.064703 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0306000 | SBH | 5.72211 | 11.8103 | 17.344778 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012370 | RBH | 0.088994 | 0.141164 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0285300 | SBH | 25.922183 | 34.989481 | 34.823198 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0012110 | RBH | 0.036289 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012080 | RBH | 0.072670 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012500 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012100 | RBH | 0.091529 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012600 | RBH | 0.000000 | 0.358775 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012450 | RBH | 0.000000 | 0.000000 | 0.141259 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012390 | RBH | 0.161068 | 0.000000 | 0.000000 |
