Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_10g0002810 | OGI:10012650 | 15/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr10:4094400-4098115 | ||||||||
| Gene Symbol | LIL1, ALS1, - | ||||||||||
| DNA seq | ATAACCAACTCCGTTCCATACCATCGTCCGTCCATCCATCCGAACCGCACGACAACCGAAGCAGTCCACGCGTCCACCACCTTCTCGCATGTCGCGCCACCTCTcctcctcctcgcgctcctcctcctctccccgctcgccacgtccgcacagccgccgccgccgtcgaacacctccgcctccacctccgccgcggccgtcctcctctccttcctcgactccctcccacccgcctcccagcgcctcctcctcccgtcatggcggcgaagccgaagcagcagcagcagcggcaatgccaccgcgcctccaccgcactgcgcgtttcttggcgtcacatgctccgacaccggcgcggtggcggcgctcaacctctccggggcggggctcaccggcgcgctctccgcctccgcgccgcgcctctgcgcgctcccggcctccgcgctccccgtgctcgacctcagcgggaacggcttcaccggcgcggtccccgccgcgctcgccgcgtgcgccggggtcgccacgctcctcctcggcgggaacaacctctccggcggggttcccccggagttgctctcctcgcgccagctcgtcgaggtcgacctcaacggcaacgcgctcaccggggagatccccgcccccgccggctcgccggtggtgctcgagtacctcgacctcagcggcaactccctctccggcgccgtcccgccggagctcgccgcgctcccggatctccggtacttggacctcagcatcaaccggctcaccggcccaatgccggagttcccggtccactgccggctgaaattcctcggcctctaccgcaaccagatcgccggcgagctccccaagagcctcggcaactgcggcaacctcaccgtcttgttcctgtcctacaacaatctcaccggcgaggtgcctgatttcttcgcctccatgcccaatctgcagaagctctaccttgacgacaaccatttcgccggtgagttgccggcgagcattggtgagctggtgagcttggaaaagctggtggtgacggcgaacaggttcaccggaacaatcccggaaacaattgggaattgccggtgtttgattatgctctacttaaacagcaacaacttcaccggctcaattccggcgttcatcggcaatttgagcagattggagatgttctcaatggcagaaaatggcattactgggagcattccacctgaaattgggaaatgccggcaattggtcgaccttcaactccataagaacagcctcaccgggacgataccgccggagatcggtgagctaagccgattacagaagctctacctgtacaacaacttactccatggtccagttcctcaagcattgtggcgattggttgacatggtggagttgtttctcaacgacaacagattaagtggtgaggtacatgaagatatcactcaaatgagtaatctaagagagatcaccttgtacaacaacaacttcaccggcgagctgccacaagccctggggatgaacacaacatcagggcttcttcgtgtggacttcactcgcaaccgctttcgcggcgcaattcctccaggattgtgcacgagaggccagcttgccgttcttgatcttggtaacaaccagtttgatgggggctttcctagtgggatagcaaaatgtgagtctctatacagggttaatctgaacaacaacaagctcagagggagcttgcctgcagatttgagcaccaacagaggtgtgacacacctcgacattagtggaaatctgctcaaaaggaggatacctggtgtgcttggtttatggcacaatcttacaaggcttgatgtatctggcaacaaattctcaggtccaataccacatgaactcggggctctaagtattcttgacaccctgctcatgtcatcgaacaggctgaccggagcaataccacacgagttggggaattgcaagaggcttgcccatttggatcttggaaataaccttctcaatggaagtatacctgcagaaattacaacacttagtggcctgcaaaatcttttgcttggtggaaacaagctcgctggaccaattccggattctttcaccgcaacgcagagcctccttgagctgcaacttggtagcaataatttggaaggaggcatcccacagagcgtaggcaaccttcagtacatatcacaaggtctgaatattagcaacaacagactaagcggcccaatcccgcacagccttggtaatcttcagaagctggaagtgctcgacttgtcaaataactcattatctggtcctattccatcgcagctaagtaacatgatctcactttctgttgtgaacatttcgttcaatgagctatctggtcagctccctgatggatgggataagattgcaacacggttacctcaagggtttctagggaatcctcagttgtgtgtaccatccggaaatgcaccttgcacaaagtatcaatctgcgaaaaacaaaagaaggaacacacaaattattgtggcattgctagtgtcaactcttgctttgatgattgctagtctggttattattcatttcattgtgaagaggtctcagcgtctatctgcaaatcgtgtatcaatgcgcaacctggactccaccgaagaattgccagaagacttgacatatgaagacattcttcgggccactgacaactggagtgagaaatacgtcattggaagaggccggcatggcacggtctaccggactgagcttgcagttggaaagcagtgggcagtcaagacagttgatttgtcccagtgcaaattccctattgaaatgaagatattgaacacggtgaagcaccggaacattgtgaggatggctgggtactgcatccgtagcaacatcggcctaattctctatgagtacatgcccgaggggacactctttgagctattgcatgaaaggacacctcaagtgtCccttgactggaacgtccggcaccagatcgcccttggtgtggcggagagcttgtcctatcttcaccatgactgtgtgcccatgattatccatagagatgtcaaatcgagcaacatcctgatggatgctgagctagtacccaagctcacagattttgggatggggaagatcattgatgatgatgatgcagacgcgacagtgtctgtcgttgttggcacccttggttatattgctccaggtgaaccctcttctcttcatatcaatcctgagctaatttatttttatttattttcagtattaacatgcttcatcatttttgcacagagcatggatactccacgagattaagcgagaagagtgatgtatacagttatggagtagtgcttcttgaactgttgtgccggaagatgcctgtggatcctgcatttggagatggtgtggacattgtgacttggatgaggtcaaatctgaatcaggcagatcactccaacatcatgaggttcctggatgaggagataataTACtggcctgaacatgagaaggcgaaggtgttggacttgttggatttagcgatgacctgcactcaggtttctttccagttaaggccatccatgagggaggtggtgagcatcttgatgaggattgagagaagtaatcacgttcagttctttgaagaagctccatgagatcgactatatcctatcatttgtgaaatagaagatacaattgtacagtgtatttcaagtgcgttataattttgtttctgcaaa
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| CDS seq | atgccggagttcccggtccactgccggctgaaattcctcggcctctaccgcaaccagatcgccggcgagctccccaagagcctcggcaactgcggcaacctcaccgtcttgttcctgtcctacaacaatctcaccggcgaggtgcctgatttcttcgcctccatgcccaatctgcagaagctctaccttgacgacaaccatttcgccggtgagttgccggcgagcattggtgagctggtgagcttggaaaagctggtggtgacggcgaacaggttcaccggaacaatcccggaaacaattgggaattgccggtgtttgattatgctctacttaaacagcaacaacttcaccggctcaattccggcgttcatcggcaatttgagcagattggagatgttctcaatggcagaaaatggcattactgggagcattccacctgaaattgggaaatgccggcaattggtcgaccttcaactccataagaacagcctcaccgggacgataccgccggagatcggtgagctaagccgattacagaagctctacctgtacaacaacttactccatggtccagttcctcaagcattgtggcgattggttgacatggtggagttgtttctcaacgacaacagattaagtggtgaggtacatgaagatatcactcaaatgagtaatctaagagagatcaccttgtacaacaacaacttcaccggcgagctgccacaagccctggggatgaacacaacatcagggcttcttcgtgtggacttcactcgcaaccgctttcgcggcgcaattcctccaggattgtgcacgagaggccagcttgccgttcttgatcttggtaacaaccagtttgatgggggctttcctagtgggatagcaaaatgtgagtctctatacagggttaatctgaacaacaacaagctcagagggagcttgcctgcagatttgagcaccaacagaggtgtgacacacctcgacattagtggaaatctgctcaaaaggaggatacctggtgtgcttggtttatggcacaatcttacaaggcttgatgtatctggcaacaaattctcaggtccaataccacatgaactcggggctctaagtattcttgacaccctgctcatgtcatcgaacaggctgaccggagcaataccacacgagttggggaattgcaagaggcttgcccatttggatcttggaaataaccttctcaatggaagtatacctgcagaaattacaacacttagtggcctgcaaaatcttttgcttggtggaaacaagctcgctggaccaattccggattctttcaccgcaacgcagagcctccttgagctgcaacttggtagcaataatttggaaggaggcatcccacagagcgtaggcaaccttcagtacatatcacaaggtctgaatattagcaacaacagactaagcggcccaatcccgcacagccttggtaatcttcagaagctggaagtgctcgacttgtcaaataactcattatctggtcctattccatcgcagctaagtaacatgatctcactttctgttgtgaacatttcgttcaatgagctatctggtcagctccctgatggatgggataagattgcaacacggttacctcaagggtttctagggaatcctcagttgtgtgtaccatccggaaatgcaccttgcacaaagtatcaatctgcgaaaaacaaaagaaggaacacacaaattattgtggcattgctagtgtcaactcttgctttgatgattgctagtctggttattattcatttcattgtgaagaggtctcagcgtctatctgcaaatcgtgtatcaatgcgcaacctggactccaccgaagaattgccagaagacttgacatatgaagacattcttcgggccactgacaactggagtgagaaatacgtcattggaagaggccggcatggcacggtctaccggactgagcttgcagttggaaagcagtgggcagtcaagacagttgatttgtcccagtgcaaattccctattgaaatgaagatattgaacacggtgaagcaccggaacattgtgaggatggctgggtactgcatccgtagcaacatcggcctaattctctatgagtacatgcccgaggggacactctttgagctattgcatgaaaggacacctcaagtgtCccttgactggaacgtccggcaccagatcgcccttggtgtggcggagagcttgtcctatcttcaccatgactgtgtgcccatgattatccatagagatgtcaaatcgagcaacatcctgatggatgctgagctagtacccaagctcacagattttgggatggggaagatcattgatgatgatgatgcagacgcgacagtgtctgtcgttgttggcacccttggttatattgctccagagcatggatactccacgagattaagcgagaagagtgatgtatacagttatggagtagtgcttcttgaactgttgtgccggaagatgcctgtggatcctgcatttggagatggtgtggacattgtgacttggatgaggtcaaatctgaatcaggcagatcactccaacatcatgaggttcctggatgaggagataataTACtggcctgaacatgagaaggcgaaggtgttggacttgttggatttagcgatgacctgcactcaggtttctttccagttaaggccatccatgagggaggtggtgagcatcttgatgaggattgagagaagtaatcacgttcagttctttgaagaagctccatga
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| Protein seq | MPEFPVHCRLKFLGLYRNQIAGELPKSLGNCGNLTVLFLSYNNLTGEVPDFFASMPNLQKLYLDDNHFAGELPASIGELVSLEKLVVTANRFTGTIPETIGNCRCLIMLYLNSNNFTGSIPAFIGNLSRLEMFSMAENGITGSIPPEIGKCRQLVDLQLHKNSLTGTIPPEIGELSRLQKLYLYNNLLHGPVPQALWRLVDMVELFLNDNRLSGEVHEDITQMSNLREITLYNNNFTGELPQALGMNTTSGLLRVDFTRNRFRGAIPPGLCTRGQLAVLDLGNNQFDGGFPSGIAKCESLYRVNLNNNKLRGSLPADLSTNRGVTHLDISGNLLKRRIPGVLGLWHNLTRLDVSGNKFSGPIPHELGALSILDTLLMSSNRLTGAIPHELGNCKRLAHLDLGNNLLNGSIPAEITTLSGLQNLLLGGNKLAGPIPDSFTATQSLLELQLGSNNLEGGIPQSVGNLQYISQGLNISNNRLSGPIPHSLGNLQKLEVLDLSNNSLSGPIPSQLSNMISLSVVNISFNELSGQLPDGWDKIATRLPQGFLGNPQLCVPSGNAPCTKYQSAKNKRRNTQIIVALLVSTLALMIASLVIIHFIVKRSQRLSANRVSMRNLDSTEELPEDLTYEDILRATDNWSEKYVIGRGRHGTVYRTELAVGKQWAVKTVDLSQCKFPIEMKILNTVKHRNIVRMAGYCIRSNIGLILYEYMPEGTLFELLHERTPQVSLDWNVRHQIALGVAESLSYLHHDCVPMIIHRDVKSSNILMDAELVPKLTDFGMGKIIDDDDADATVSVVVGTLGYIAPEHGYSTRLSEKSDVYSYGVVLLELLCRKMPVDPAFGDGVDIVTWMRSNLNQADHSNIMRFLDEEIIYWPEHEKAKVLDLLDLAMTCTQVSFQLRPSMREVVSILMRIERSNHVQFFEEAP |
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| Function | Receptor-like protein kinase [UniProtKB/Swiss-Prot:P93194] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0002810 | OsPr106_10g0002810.01 | Chr10 | 4094400 | 4098115 | + | NAM | ||
| CDS seq | atgccggagttcccggtccactgccggctgaaattcctcggcctctaccgcaaccagatcgccggcgagctccccaagagcctcggcaactgcggcaacctcaccgtcttgttcctgtcctacaacaatctcaccggcgaggtgcctgatttcttcgcctccatgcccaatctgcagaagctctaccttgacgacaaccatttcgccggtgagttgccggcgagcattggtgagctggtgagcttggaaaagctggtggtgacggcgaacaggttcaccggaacaatcccggaaacaattgggaattgccggtgtttgattatgctctacttaaacagcaacaacttcaccggctcaattccggcgttcatcggcaatttgagcagattggagatgttctcaatggcagaaaatggcattactgggagcattccacctgaaattgggaaatgccggcaattggtcgaccttcaactccataagaacagcctcaccgggacgataccgccggagatcggtgagctaagccgattacagaagctctacctgtacaacaacttactccatggtccagttcctcaagcattgtggcgattggttgacatggtggagttgtttctcaacgacaacagattaagtggtgaggtacatgaagatatcactcaaatgagtaatctaagagagatcaccttgtacaacaacaacttcaccggcgagctgccacaagccctggggatgaacacaacatcagggcttcttcgtgtggacttcactcgcaaccgctttcgcggcgcaattcctccaggattgtgcacgagaggccagcttgccgttcttgatcttggtaacaaccagtttgatgggggctttcctagtgggatagcaaaatgtgagtctctatacagggttaatctgaacaacaacaagctcagagggagcttgcctgcagatttgagcaccaacagaggtgtgacacacctcgacattagtggaaatctgctcaaaaggaggatacctggtgtgcttggtttatggcacaatcttacaaggcttgatgtatctggcaacaaattctcaggtccaataccacatgaactcggggctctaagtattcttgacaccctgctcatgtcatcgaacaggctgaccggagcaataccacacgagttggggaattgcaagaggcttgcccatttggatcttggaaataaccttctcaatggaagtatacctgcagaaattacaacacttagtggcctgcaaaatcttttgcttggtggaaacaagctcgctggaccaattccggattctttcaccgcaacgcagagcctccttgagctgcaacttggtagcaataatttggaaggaggcatcccacagagcgtaggcaaccttcagtacatatcacaaggtctgaatattagcaacaacagactaagcggcccaatcccgcacagccttggtaatcttcagaagctggaagtgctcgacttgtcaaataactcattatctggtcctattccatcgcagctaagtaacatgatctcactttctgttgtgaacatttcgttcaatgagctatctggtcagctccctgatggatgggataagattgcaacacggttacctcaagggtttctagggaatcctcagttgtgtgtaccatccggaaatgcaccttgcacaaagtatcaatctgcgaaaaacaaaagaaggaacacacaaattattgtggcattgctagtgtcaactcttgctttgatgattgctagtctggttattattcatttcattgtgaagaggtctcagcgtctatctgcaaatcgtgtatcaatgcgcaacctggactccaccgaagaattgccagaagacttgacatatgaagacattcttcgggccactgacaactggagtgagaaatacgtcattggaagaggccggcatggcacggtctaccggactgagcttgcagttggaaagcagtgggcagtcaagacagttgatttgtcccagtgcaaattccctattgaaatgaagatattgaacacggtgaagcaccggaacattgtgaggatggctgggtactgcatccgtagcaacatcggcctaattctctatgagtacatgcccgaggggacactctttgagctattgcatgaaaggacacctcaagtgtCccttgactggaacgtccggcaccagatcgcccttggtgtggcggagagcttgtcctatcttcaccatgactgtgtgcccatgattatccatagagatgtcaaatcgagcaacatcctgatggatgctgagctagtacccaagctcacagattttgggatggggaagatcattgatgatgatgatgcagacgcgacagtgtctgtcgttgttggcacccttggttatattgctccagagcatggatactccacgagattaagcgagaagagtgatgtatacagttatggagtagtgcttcttgaactgttgtgccggaagatgcctgtggatcctgcatttggagatggtgtggacattgtgacttggatgaggtcaaatctgaatcaggcagatcactccaacatcatgaggttcctggatgaggagataataTACtggcctgaacatgagaaggcgaaggtgttggacttgttggatttagcgatgacctgcactcaggtttctttccagttaaggccatccatgagggaggtggtgagcatcttgatgaggattgagagaagtaatcacgttcagttctttgaagaagctccatga
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| Protein seq | MPEFPVHCRLKFLGLYRNQIAGELPKSLGNCGNLTVLFLSYNNLTGEVPDFFASMPNLQKLYLDDNHFAGELPASIGELVSLEKLVVTANRFTGTIPETIGNCRCLIMLYLNSNNFTGSIPAFIGNLSRLEMFSMAENGITGSIPPEIGKCRQLVDLQLHKNSLTGTIPPEIGELSRLQKLYLYNNLLHGPVPQALWRLVDMVELFLNDNRLSGEVHEDITQMSNLREITLYNNNFTGELPQALGMNTTSGLLRVDFTRNRFRGAIPPGLCTRGQLAVLDLGNNQFDGGFPSGIAKCESLYRVNLNNNKLRGSLPADLSTNRGVTHLDISGNLLKRRIPGVLGLWHNLTRLDVSGNKFSGPIPHELGALSILDTLLMSSNRLTGAIPHELGNCKRLAHLDLGNNLLNGSIPAEITTLSGLQNLLLGGNKLAGPIPDSFTATQSLLELQLGSNNLEGGIPQSVGNLQYISQGLNISNNRLSGPIPHSLGNLQKLEVLDLSNNSLSGPIPSQLSNMISLSVVNISFNELSGQLPDGWDKIATRLPQGFLGNPQLCVPSGNAPCTKYQSAKNKRRNTQIIVALLVSTLALMIASLVIIHFIVKRSQRLSANRVSMRNLDSTEELPEDLTYEDILRATDNWSEKYVIGRGRHGTVYRTELAVGKQWAVKTVDLSQCKFPIEMKILNTVKHRNIVRMAGYCIRSNIGLILYEYMPEGTLFELLHERTPQVSLDWNVRHQIALGVAESLSYLHHDCVPMIIHRDVKSSNILMDAELVPKLTDFGMGKIIDDDDADATVSVVVGTLGYIAPEHGYSTRLSEKSDVYSYGVVLLELLCRKMPVDPAFGDGVDIVTWMRSNLNQADHSNIMRFLDEEIIYWPEHEKAKVLDLLDLAMTCTQVSFQLRPSMREVVSILMRIERSNHVQFFEEAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.287429 | 1.899386 | 0.467254 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0155700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g06740 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0155700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0002970 | RBH | 0.0 | 3.613154 | 0.178550 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002900 | RBH | 0.0 | 0.577450 | 0.359281 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002860 | RBH | 0.0 | 0.0 | 0.279603 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003210 | SBH | 0.0 | 0.025140 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002830 | RBH | 0.286334 | 1.885871 | 0.309288 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0060800 | SBH | 0.474298 | 2.2382225 | 1.5154645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003110 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0067700 | RBH | 0.3301375 | 0.553644 | 5.2323575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002920 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003020 | RBH | 0.0 | 3.263379 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002840 | RBH | 0.0 | 0.0 | 0.064976 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003060 | RBH | 0.0 | 1.566857 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002980 | RBH | 0.0 | 0.0 | 0.200476 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003040 | RBH | 0.0 | 0.0 | 0.220979 |
