Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_09g0010590 | OGI:09044570 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr09:16503024-16506194 | ||||||||
| Gene Symbol | CCR19, OsCCR19 | ||||||||||
| DNA seq | ttgcttgagtatacttttccatttgttattacatctttcttcagatgtgggttggtgataatttggtacagatggttaaggaaatcaattgtgttagatatactaatgccaatgaagaaattactcgtgaaatcacataaatatataatttctgaaggggcagaattcacatctgttgatattcagtgatagtctccatgttttttcgttatccacttagtttacatacataacaacagatgcctaacactgttacaggagaacgttaaatgctctgtttcttcaacagtatcatgctggcgcaccattcaactcttctgggatctctttgctcagcactggaaggtgccccttctcctggaggctcttcaccgtctcgtagagcgagtcgctcacaggtatgaagtggaggccaagatcctgcagcttcttgttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacctggaacaaccatggcaagtttcagcaatggtgcatcatactgtggtgagttgtcgtttccaactttgcctagatgcatttgtagttactacttgctaacatatactcgtatatgaaactgcagttggtgtaggttatgtgttcatttttccaccttttgtcgtgttgagaggagtggactgacaaatagcttcaatcttacccgtgatggtataaaatctttacattctaaaatcttctccagtaagcttaaaaaagtgtattgcctgccgtcactcgtgtgtgtttggttcacctgcacctgggcacctatttcttatgctttactagtacccttaTCttactcaccaaccaaaggtgggatccaccctaccaagtacactcgacaagttcTtttttttttttgaaaagaaagtacactcgacaagttataagcaaactaattcttatggagtagtaccagaggtagtagtaaataaaagtttgccaaataatcattgtggttcggttcagtaattttatattttagttttgctggacacactatagttctacgtacaaatttcataagaggaaatggagtgccccttgtttttattgccatcgaaatagtcatggtttttttctaaaaaaaaaagagaagatatattaatatgtggtatatcatttaacaaatatgtaagtttaaattcgatccataacttgaaaacaaaaaatgaatattacacctattcacatgtatatttgtttttttagtcaaattagcttgtatgtttgtggaataatgtatcccaaattaatttatgttgtcaaattgtttcatgaatatatgaaaatgacattggaaaacaagggatattgctttaagggatgaaaaaccatatccttaataagacatctataggactacacctagcatctaggaaaaaaaattaggaatatcacttgtaacatgagtttgtgtttgatgcattaatcgacagaggtggaagttaggtgctgggggcaggagcatacaagtgctaaatgcgtactaaagcaatgaaaatgtcctaagcatgtaagcggcataatatagtactatcttttttgaagctaagctatctagcatatatctactagtatctacacaactgattaacatgcaagggcatgggcagatcaagagatggattacagatcactagcacacatacagaaactcaccttgtgggcactggatactcggggaagagcttgccgaggatgtggacgacgtcctcacggtgcaggacgcgctcggcgcagaggtaccggccggaggcctctggcgcctcgaagacgcggacgtgcgcgtccgcgacgtcgcgcacgtccacgtacgcctgcacggcattggcgtacttcttggccgagccgtcgaggtacttgaggatgtgcacggcgctggcgttcaccgtcggctgcagcagcgggccgaccaccagcacggggttgacgacgacgaggttgacgccgctctcttcggccgccttgcacgcctcctgctctgccaccgccttaccgtagcagtaccagttctgatgagcagaaaagacagtcgaccactcgtcgttaacgtcaggtgcgctcagtgttgtcatgtttatgcaattaataattatgcgtgatcgatgtcgtggccataagataagaattaattcttctcacaaaaaatgttttgaaaatcaagtgttggttgtgataggaacagtgtaatcaatatcttttgctactgtgaataagctggcaaattgcccttgcagtttaggtaagctggtaatctagtaaccacgtggttttgttacactgaaccaagctacgtacgtgtgcagTtttcatggagaggtttattgctgaccttggttttcttgcagaactcgaggtcgctccagcaggactcgtcgacgaccacgtcggggccgcggttggggtccatggtgacggcgccgatggacgacgtgaacaccacccggcgcaccgtgccggcctccgccgccgcctttatcacgtactccgtCccccgcaccgccggctccaccatctgctcctgcatcaccatgcaccgatccgtgcgttccaaacccaaaaccaagtcatggatcgatatatatgatcgattcagtagtatgcaagatgcaactatgcaaagatctgtccggaGaacgcacagggtcatcggtgacgggcgaggccgtgtggaacacgccgtggcagccgtcgagggcggcgcggatggagtcgtagtcgaggaggtcggccttgcagaggaccagcctctcgtcggcgccgtccagcgccttcaggtgggcgttcttcgggtcatctacacagaaacgcatcacgtcgacggtcgacgccaagtcaagcacacagccacacaggtacggacatttttatcattgatcaaaaattatttgcatggatgtccagcgagtttgtgcgtgcgtgcctgggtttctcactgtgcccttcacggtgtagcccctctccagcagcagcttgacgagccacgacgcgatgtacccggcggcgccggtgacacacaccgtttggccgtgccccggcggcagctcctcctgctgctgcgccgccgctgcggcggcggcggcgtcatcggcaacgacgacgacggtcatcgttgcttgttagtgttaggcaatttgttggat
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| CDS seq | atgaccgtcgtcgtcgttgccgatgacgccgccgccgccgcagcggcggcgcagcagcaggaggagctgccgccggggcacggccaaacggtgtgtgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagctgctgctggagaggggctacaccgtgaagggcacagtgagaaacccagatgacccgaagaacgcccacctgaaggcgctggacggcgccgacgagaggctggtcctctgcaaggccgacctcctcgactacgactccatccgcgccgccctcgacggctgccacggcgtgttccacacggcctcgcccgtcaccgatgaccctgagcagatggtggagccggcggtgcggggGacggagtacgtgataaaggcggcggcggaggccggcacggtgcgccgggtggtgttcacgtcgtccatcggcgccgtcaccatggaccccaaccgcggccccgacgtggtcgtcgacgagtcctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaaggcggtggcagagcaggaggcgtgcaaggcggccgaagagagcggcgtcaacctcgtcgtcgtcaaccccgtgctggtggtcggcccgctgctgcagccgacggtgaacgccagcgccgtgcacatcctcaagtacctcgacggctcggccaagaagtacgccaatgccgtgcaggcgtacgtggacgtgcgcgacgtcgcggacgcgcacgtccgcgtcttcgaggcgccagaggcctccggccggtacctctgcgccgagcgcgtcctgcaccgtgaggacgtcgtccacatcctcggcaagctcttccccgagtatccagtgcccacaaggtgctctgacgaggtgaacccacggaagcagccgtacaagatgtccaacaagaagctgcaggatcttggcctccacttcatacctgtgagcgactcgctctacgagacggtgaagagcctccaggagaaggggcaccttccagtgctgagcaaagagatcccagaagagttgaatggtgcgccagcatga
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| Protein seq | MTVVVVADDAAAAAAAAQQQEELPPGHGQTVCVTGAAGYIASWLVKLLLERGYTVKGTVRNPDDPKNAHLKALDGADERLVLCKADLLDYDSIRAALDGCHGVFHTASPVTDDPEQMVEPAVRGTEYVIKAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLEFCKKTKNWYCYGKAVAEQEACKAAEESGVNLVVVNPVLVVGPLLQPTVNASAVHILKYLDGSAKKYANAVQAYVDVRDVADAHVRVFEAPEASGRYLCAERVLHREDVVHILGKLFPEYPVPTRCSDEVNPRKQPYKMSNKKLQDLGLHFIPVSDSLYETVKSLQEKGHLPVLSKEIPEELNGAPA |
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| Function | Cinnamoyl-CoA reductase 1 [UniProtKB/Swiss-Prot:Q9S9N9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_09g0010590 | OsPr106_09g0010590.01 | Chr09 | 16503024 | 16506194 | - | NAM | ||
| CDS seq | atgaccgtcgtcgtcgttgccgatgacgccgccgccgccgcagcggcggcgcagcagcaggaggagctgccgccggggcacggccaaacggtgtgtgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagctgctgctggagaggggctacaccgtgaagggcacagtgagaaacccagatgacccgaagaacgcccacctgaaggcgctggacggcgccgacgagaggctggtcctctgcaaggccgacctcctcgactacgactccatccgcgccgccctcgacggctgccacggcgtgttccacacggcctcgcccgtcaccgatgaccctgagcagatggtggagccggcggtgcggggGacggagtacgtgataaaggcggcggcggaggccggcacggtgcgccgggtggtgttcacgtcgtccatcggcgccgtcaccatggaccccaaccgcggccccgacgtggtcgtcgacgagtcctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaaggcggtggcagagcaggaggcgtgcaaggcggccgaagagagcggcgtcaacctcgtcgtcgtcaaccccgtgctggtggtcggcccgctgctgcagccgacggtgaacgccagcgccgtgcacatcctcaagtacctcgacggctcggccaagaagtacgccaatgccgtgcaggcgtacgtggacgtgcgcgacgtcgcggacgcgcacgtccgcgtcttcgaggcgccagaggcctccggccggtacctctgcgccgagcgcgtcctgcaccgtgaggacgtcgtccacatcctcggcaagctcttccccgagtatccagtgcccacaaggtgctctgacgaggtgaacccacggaagcagccgtacaagatgtccaacaagaagctgcaggatcttggcctccacttcatacctgtgagcgactcgctctacgagacggtgaagagcctccaggagaaggggcaccttccagtgctgagcaaagagatcccagaagagttgaatggtgcgccagcatga
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| Protein seq | MTVVVVADDAAAAAAAAQQQEELPPGHGQTVCVTGAAGYIASWLVKLLLERGYTVKGTVRNPDDPKNAHLKALDGADERLVLCKADLLDYDSIRAALDGCHGVFHTASPVTDDPEQMVEPAVRGTEYVIKAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLEFCKKTKNWYCYGKAVAEQEACKAAEESGVNLVVVNPVLVVGPLLQPTVNASAVHILKYLDGSAKKYANAVQAYVDVRDVADAHVRVFEAPEASGRYLCAERVLHREDVVHILGKLFPEYPVPTRCSDEVNPRKQPYKMSNKKLQDLGLHFIPVSDSLYETVKSLQEKGHLPVLSKEIPEELNGAPA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_09g0010590 | OsPr106_09g0010590.02 | Chr09 | 16503102 | 16506194 | - | IsoSeq | ||
| CDS seq | atgccgtgcaggcgtacgtggacgtgcgcgacgtcgcggacgcgcacgtccgcgtcttcgaggcgccagaggcctccggccggtacctctgcgccgagcgcgtcctgcaccgtgaggacgtcgtccacatcctcggcaagctcttccccgagtatccagtgcccacaaggtgctctgacg |
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| Protein seq | MPCRRTWTCATSRTRTSASSRRQRPPAGTSAPSASCTVRTSSTSSASSSPSIQCPQGALT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr09 | 16505566 | 16505694 | - | OsPr106_09g0010590.01 | OsPr106_09g0010590.02,OsPr106_09g0010590.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 40.341938 | 0.0 | 173.802826 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0419200 | RBH | 4.867537 | 4.992736 | 36.361000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g25150 | RBH | 3.009015 | 3.058797 | 8.456001 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0419200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010490 | RBH | 0.676057 | 3.283417 | 37.497005 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010450 | RBH | 2.544685 | 0.000000 | 7.501547 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010740 | RBH | 0.602498 | 0.0 | 14.830691 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010500 | RBH | 0.929836 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017550 | RBH | 2.453776 | 69.225052 | 52.030563 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0253000 | RBH | 16.8350695 | 5.5217555 | 1.6956935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010590 | RBH | 0.829145 | 0.487505 | 9.130654 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0239300 | RBH | 37.3979345 | 1.208891 | 0.5699865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010560 | RBH | 1.873924 | 0.418990 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010340 | RBH | 5.044110 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010500 | RBH | 47.512569 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010300 | RBH | 3.697876 | 0.0 | 13.426053 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010350 | RBH | 1.009762 | 1.487840 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010840 | RBH | 0.882535 | 0.0 | 11.552800 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010640 | RBH | 1.359793 | 0.000000 | 42.951340 |
