Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_09g0006340 | OGI:09030440 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr09:11027474-11032009 | ||||||||
| Gene Symbol | RLCK262, OsRLCK262 | ||||||||||
| DNA seq | agctctgtgtcaaccggagctcgagctgctttccatcaccggacatgatgaaagccttgatctgttgccgtcaacgtagtttctctgccggccaacgcgacggcgcgacatcccctaatcactctcaatccattctgtggtaaggtagggcaaccgcaggtgattggagaggcaccctcaaaatctcaatccacccgccggcgtacatctccgctaccacctgctgcgcgtggcgtgatggctccaagctagctttccccgccgcgcccgcctgaggatccacaccacctgctcggctgtcacggctcgccccacatcgcgcgcaggatgttcgacgaattgcctgacccggacaacgtctcgccgttacgcgtcgttgaccagactgcgcctgcttcccctggcatgtgcacgcccacgccgtgcagctcgggcttttgctacagcacgttcgtcgggagtgctctgcagctctggtgcgcatgtcccggcggcgcagggtcagacaggcgctcggtatctctcttcttcctctgttagatgtcttgccgttacatgattcgtcttgtgctgatttctgttggatgcttatgctaaacagggaaatttacacggagagacatgttgcaatatcactgaacataccgggtggagatcatttctgttctatgttgttggagggcgcccaggaattctttgattcattcagattttaccatcaggttgcacagatttggtttctggttcattataataagcaataaagcaacaagatgacccaaaggatgaattctttgcatctcccatctctccacaggtaccaccttttggctccatttgcttgtcttctttggcctaactggtttcctccacagctgcatagctctgtcagattatgtgataagaccaattgcatgtcacttgaagccggttatgactccacaatgcaacattgttgcaagcgttggactatgtgataagacatattgcatagcctactattaatgaatgggtttgggccaattatgaaatgctaatagtccgccatttggaaggcttcaacctggttagccggccggccagtcagacagctaccccgctgtcttgcaaaattatggctagcagttctcccaagcatcagcagtggcagcaatgagctctcatcgccttctattcacacagcttcacctctacaacttgctgttgctcatccatgttcaccatgctacctcactcaacttcagatttgacttctccgagcctggttcgtactgtacccctggttcagagatcgcctgtgctggcgatgcctacccctacgcccatacgatcgagctgacaaagaccgacatcagcgacggaaacctccgcagcatcggccgcgtgtggtatgcacggccggtgccgctctggaacaacaccaccggtgaggtggccagcttcaggaccaccttctccttccaaatcaagccggccaacctgggcgtcagtgctgacggtatggccttcttcctcggccattacccgtcaggcatccctcatcgcagctatggcggaaacctcggcctcttcaatggcagcaacaacaagaacgcaacgggcaccgctaggatcgtggcggtcgagtttgacacctacatgaacaaggaatgggagaaggatggcaaccatgtcgggatcgatgttaactccatcgtctctgtcgcggcaacctcaccggacaagaacttagcaagcggcaccaccatgactgccgatatcagctacgacagcagtgcagagatactggcagtcaccttctggatcaacggaacctcctaccatgtcagtgccagcgttgatatgagaagatgcttgcctgaggtggtcgctgttggtttctctgcttctaccggaagctccattgaagtacaccgggtgctgtcatggtcattcaactccaccctaacatggatgaattcttcagtaatgccaccaggagcagcacctgtgCccccagaaactatcagctctgaaccaataatgtcaccaggagcagcacctgtgcgcacagaaactgtgagctcccaatcacaaggtaaattacatggtataatagctatttcagttgcagtatcctttgtgctggtatgtgctttcatgggttttcttctacgacgtcgattagtatggaagaaatcaaatgaaatctctgatggagattgtcagattgaacttgatgaaattttttattcaaaaaaggaacttgatgaaattgagtttgcaaaaggtgttggccccaaaaggtatcattacagtgaactagctgctgcgacgggtaactttgcagaggagaagaagctaggaagagggggttttggtcatgtttaccagggcttcctgaaaactgatgatcaggaacggcttgtggccataaaaaagttctcaccagactcatctgctcaggggaggaaggagtttgaggctgagatcaaaatcataagtcggctgaggcatcggaaccttgtccaattaataggatggtgtgacagttgcatgggactcctgattgtttatgagctcgtatcagaaggtagtcttgacaagcatatatataaaaatgcgaggttgctaacatgggccgaaaggtacaatatctaactcatcttttgctgaatatgtttgcttttttcaatttagaacttcttggagaacagagataagagttgtactcatggatgtcagacttgcagtctaatggtaactcatggataaccagcttgcagtctcatggtaattcttggatgtcacacttgcagtgtaatgatatgttctttttaaagaaatcatacaacgagtccaatgaaaaaaaatagaaatcgtaataaatttttaaaattcgttattaatagaagacatatccttttgagtatcttactggataagtttggtgattaataaggtgtgcttctagatagagccactggcccacaatcagggcaattcacaggatagcccaatagattgcagaataaaaatgctgctcacatctacttgaaaattgattaactaattaaataccagcagccctttgtacttcgattgtgaagttgatatatagttttcttctaatcacaaggctatgaaggttaggccaggactcagtcctaatcaggtgtttatttttgctatggtatatctatccaactataacacaggactagctaaattttcaggtagatttgagtcaattaaggaactaaaattaagaccacattgcgtcttcagttggtttcttagaggttcagctgtgtattatctttagggataattttatcatccttgagaagatacctagaggcacaatattttctaataaaaaatttggtacttcgaggtactaagtacttttaggtaccaaaaattttagtgtaaaatttagatacctcaaggtactttctgaagtactgtaaaaattctctttctttagaggttcagctgtgtagtttcctagaaaaatatgaagaacatcattaaaatttagtatttagcatgtagaattcaaatccatccacattcaccagaagttagttttttgagttagtctccggtcctcgggaggtactagtctcttggtgaaaatagctacaaacaatcctctcttgccatccatatcattttcactacgatagtctttcatcaacaggtacaagatcatcattggccttggctctgcactccactaccttcaccaagagtgggagcagtgcgtcgtccacggcgacatcaagccaagcaacatcatgctcgactcctcctacaacaccaagcttggggactttggcctggcgaggctcgtcgaccatggcgccaagtcacggacaaccaaggtcgtgctcgggaccgccgggtacatcgacccagagctcgtcaacacgcgcaggccaagcaccgagtccgacgtctacagcttcggtatcgtcctcctcgagatcgtctccggccgtcgccccgtggaggaactggacgacagcgacgagctcttcgtgctgtcgagatgggtgtgggacctctacagcaagaacgccgtcgtggaggcggtggacgagaggctcaggtgcagcgacgatggcgacgacgagctgcagatggagcgcgtgctcgccgtcgggctgtggtgcgcgcaccctgaccggagcgaacggccgtccatggcgcaggctatgcacgccctgcagtcggaggaggcaaggttgccggctcttcggccgcagatgtacaagggtgtgccatttcttgccatgggagaacataggtacagcgatctttcaattggcaccactaccagctccagtgccagtggaaccggctgcactgcacattcagagccaactaaactgtaaaagacgatgccctattagcgatgtaaaatgcagactctgactgaaatttattttcttggtaaaactgaaactggaacaattgacacagggtgctgtgggaaatatggccgactcctaagctgttcatggattggataattttgtcgttatactt
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| CDS seq | atgagctctcatcgccttctattcacacagcttcacctctacaacttgctgttgctcatccatgttcaccatgctacctcactcaacttcagatttgacttctccgagcctggttcgtactgtacccctggttcagagatcgcctgtgctggcgatgcctacccctacgcccatacgatcgagctgacaaagaccgacatcagcgacggaaacctccgcagcatcggccgcgtgtggtatgcacggccggtgccgctctggaacaacaccaccggtgaggtggccagcttcaggaccaccttctccttccaaatcaagccggccaacctgggcgtcagtgctgacggtatggccttcttcctcggccattacccgtcaggcatccctcatcgcagctatggcggaaacctcggcctcttcaatggcagcaacaacaagaacgcaacgggcaccgctaggatcgtggcggtcgagtttgacacctacatgaacaaggaatgggagaaggatggcaaccatgtcgggatcgatgttaactccatcgtctctgtcgcggcaacctcaccggacaagaacttagcaagcggcaccaccatgactgccgatatcagctacgacagcagtgcagagatactggcagtcaccttctggatcaacggaacctcctaccatgtcagtgccagcgttgatatgagaagatgcttgcctgaggtggtcgctgttggtttctctgcttctaccggaagctccattgaagtacaccgggtgctgtcatggtcattcaactccaccctaacatggatgaattcttcagtaatgccaccaggagcagcacctgtgCccccagaaactatcagctctgaaccaataatgtcaccaggagcagcacctgtgcgcacagaaactgtgagctcccaatcacaaggtaaattacatggtataatagctatttcagttgcagtatcctttgtgctggtatgtgctttcatgggttttcttctacgacgtcgattagtatggaagaaatcaaatgaaatctctgatggagattgtcagattgaacttgatgaaattttttattcaaaaaaggaacttgatgaaattgagtttgcaaaaggtgttggccccaaaaggtatcattacagtgaactagctgctgcgacgggtaactttgcagaggagaagaagctaggaagagggggttttggtcatgtttaccagggcttcctgaaaactgatgatcaggaacggcttgtggccataaaaaagttctcaccagactcatctgctcaggggaggaaggagtttgaggctgagatcaaaatcataagtcggctgaggcatcggaaccttgtccaattaataggatggtgtgacagttgcatgggactcctgattgtttatgagctcgtatcagaaggtagtcttgacaagcatatatataaaaatgcgaggttgctaacatgggccgaaaggtacaagatcatcattggccttggctctgcactccactaccttcaccaagagtgggagcagtgcgtcgtccacggcgacatcaagccaagcaacatcatgctcgactcctcctacaacaccaagcttggggactttggcctggcgaggctcgtcgaccatggcgccaagtcacggacaaccaaggtcgtgctcgggaccgccgggtacatcgacccagagctcgtcaacacgcgcaggccaagcaccgagtccgacgtctacagcttcggtatcgtcctcctcgagatcgtctccggccgtcgccccgtggaggaactggacgacagcgacgagctcttcgtgctgtcgagatgggtgtgggacctctacagcaagaacgccgtcgtggaggcggtggacgagaggctcaggtgcagcgacgatggcgacgacgagctgcagatggagcgcgtgctcgccgtcgggctgtggtgcgcgcaccctgaccggagcgaacggccgtccatggcgcaggctatgcacgccctgcagtcggaggaggcaaggttgccggctcttcggccgcagatgtacaagggtgtgccatttcttgccatgggagaacataggtacagcgatctttcaattggcaccactaccagctccagtgccagtggaaccggctgcactgcacattcagagccaactaaactgtaa
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| Protein seq | MSSHRLLFTQLHLYNLLLLIHVHHATSLNFRFDFSEPGSYCTPGSEIACAGDAYPYAHTIELTKTDISDGNLRSIGRVWYARPVPLWNNTTGEVASFRTTFSFQIKPANLGVSADGMAFFLGHYPSGIPHRSYGGNLGLFNGSNNKNATGTARIVAVEFDTYMNKEWEKDGNHVGIDVNSIVSVAATSPDKNLASGTTMTADISYDSSAEILAVTFWINGTSYHVSASVDMRRCLPEVVAVGFSASTGSSIEVHRVLSWSFNSTLTWMNSSVMPPGAAPVPPETISSEPIMSPGAAPVRTETVSSQSQGKLHGIIAISVAVSFVLVCAFMGFLLRRRLVWKKSNEISDGDCQIELDEIFYSKKELDEIEFAKGVGPKRYHYSELAAATGNFAEEKKLGRGGFGHVYQGFLKTDDQERLVAIKKFSPDSSAQGRKEFEAEIKIISRLRHRNLVQLIGWCDSCMGLLIVYELVSEGSLDKHIYKNARLLTWAERYKIIIGLGSALHYLHQEWEQCVVHGDIKPSNIMLDSSYNTKLGDFGLARLVDHGAKSRTTKVVLGTAGYIDPELVNTRRPSTESDVYSFGIVLLEIVSGRRPVEELDDSDELFVLSRWVWDLYSKNAVVEAVDERLRCSDDGDDELQMERVLAVGLWCAHPDRSERPSMAQAMHALQSEEARLPALRPQMYKGVPFLAMGEHRYSDLSIGTTTSSSASGTGCTAHSEPTKL |
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| Function | L-type lectin-domain containing receptor kinase IX.1 [UniProtKB/Swiss-Prot:Q9LXA5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_09g0006340 | OsPr106_09g0006340.01 | Chr09 | 11027474 | 11032009 | + | NAM | ||
| CDS seq | atgagctctcatcgccttctattcacacagcttcacctctacaacttgctgttgctcatccatgttcaccatgctacctcactcaacttcagatttgacttctccgagcctggttcgtactgtacccctggttcagagatcgcctgtgctggcgatgcctacccctacgcccatacgatcgagctgacaaagaccgacatcagcgacggaaacctccgcagcatcggccgcgtgtggtatgcacggccggtgccgctctggaacaacaccaccggtgaggtggccagcttcaggaccaccttctccttccaaatcaagccggccaacctgggcgtcagtgctgacggtatggccttcttcctcggccattacccgtcaggcatccctcatcgcagctatggcggaaacctcggcctcttcaatggcagcaacaacaagaacgcaacgggcaccgctaggatcgtggcggtcgagtttgacacctacatgaacaaggaatgggagaaggatggcaaccatgtcgggatcgatgttaactccatcgtctctgtcgcggcaacctcaccggacaagaacttagcaagcggcaccaccatgactgccgatatcagctacgacagcagtgcagagatactggcagtcaccttctggatcaacggaacctcctaccatgtcagtgccagcgttgatatgagaagatgcttgcctgaggtggtcgctgttggtttctctgcttctaccggaagctccattgaagtacaccgggtgctgtcatggtcattcaactccaccctaacatggatgaattcttcagtaatgccaccaggagcagcacctgtgCccccagaaactatcagctctgaaccaataatgtcaccaggagcagcacctgtgcgcacagaaactgtgagctcccaatcacaaggtaaattacatggtataatagctatttcagttgcagtatcctttgtgctggtatgtgctttcatgggttttcttctacgacgtcgattagtatggaagaaatcaaatgaaatctctgatggagattgtcagattgaacttgatgaaattttttattcaaaaaaggaacttgatgaaattgagtttgcaaaaggtgttggccccaaaaggtatcattacagtgaactagctgctgcgacgggtaactttgcagaggagaagaagctaggaagagggggttttggtcatgtttaccagggcttcctgaaaactgatgatcaggaacggcttgtggccataaaaaagttctcaccagactcatctgctcaggggaggaaggagtttgaggctgagatcaaaatcataagtcggctgaggcatcggaaccttgtccaattaataggatggtgtgacagttgcatgggactcctgattgtttatgagctcgtatcagaaggtagtcttgacaagcatatatataaaaatgcgaggttgctaacatgggccgaaaggtacaagatcatcattggccttggctctgcactccactaccttcaccaagagtgggagcagtgcgtcgtccacggcgacatcaagccaagcaacatcatgctcgactcctcctacaacaccaagcttggggactttggcctggcgaggctcgtcgaccatggcgccaagtcacggacaaccaaggtcgtgctcgggaccgccgggtacatcgacccagagctcgtcaacacgcgcaggccaagcaccgagtccgacgtctacagcttcggtatcgtcctcctcgagatcgtctccggccgtcgccccgtggaggaactggacgacagcgacgagctcttcgtgctgtcgagatgggtgtgggacctctacagcaagaacgccgtcgtggaggcggtggacgagaggctcaggtgcagcgacgatggcgacgacgagctgcagatggagcgcgtgctcgccgtcgggctgtggtgcgcgcaccctgaccggagcgaacggccgtccatggcgcaggctatgcacgccctgcagtcggaggaggcaaggttgccggctcttcggccgcagatgtacaagggtgtgccatttcttgccatgggagaacataggtacagcgatctttcaattggcaccactaccagctccagtgccagtggaaccggctgcactgcacattcagagccaactaaactgtaa
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| Protein seq | MSSHRLLFTQLHLYNLLLLIHVHHATSLNFRFDFSEPGSYCTPGSEIACAGDAYPYAHTIELTKTDISDGNLRSIGRVWYARPVPLWNNTTGEVASFRTTFSFQIKPANLGVSADGMAFFLGHYPSGIPHRSYGGNLGLFNGSNNKNATGTARIVAVEFDTYMNKEWEKDGNHVGIDVNSIVSVAATSPDKNLASGTTMTADISYDSSAEILAVTFWINGTSYHVSASVDMRRCLPEVVAVGFSASTGSSIEVHRVLSWSFNSTLTWMNSSVMPPGAAPVPPETISSEPIMSPGAAPVRTETVSSQSQGKLHGIIAISVAVSFVLVCAFMGFLLRRRLVWKKSNEISDGDCQIELDEIFYSKKELDEIEFAKGVGPKRYHYSELAAATGNFAEEKKLGRGGFGHVYQGFLKTDDQERLVAIKKFSPDSSAQGRKEFEAEIKIISRLRHRNLVQLIGWCDSCMGLLIVYELVSEGSLDKHIYKNARLLTWAERYKIIIGLGSALHYLHQEWEQCVVHGDIKPSNIMLDSSYNTKLGDFGLARLVDHGAKSRTTKVVLGTAGYIDPELVNTRRPSTESDVYSFGIVLLEIVSGRRPVEELDDSDELFVLSRWVWDLYSKNAVVEAVDERLRCSDDGDDELQMERVLAVGLWCAHPDRSERPSMAQAMHALQSEEARLPALRPQMYKGVPFLAMGEHRYSDLSIGTTTSSSASGTGCTAHSEPTKL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_09g0006340 | OsPr106_09g0006340.02 | Chr09 | 11027474 | 11028332 | + | NAM | ||
| CDS seq | atgttcgacgaattgcctgacccggacaacgtctcgccgttacgcgtcgttgaccagactgcgcctgcttcccctggcatgtgcacgcccacgccgtgcagctcgggcttttgctacagcacgttcgtcgggagtgctctgcagctctggtgcgcatgtcccggcggcgcagggtcagacaggcgctcggtaccaccttttggctccatttgcttgtcttctttggcctaa
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| Protein seq | MFDELPDPDNVSPLRVVDQTAPASPGMCTPTPCSSGFCYSTFVGSALQLWCACPGGAGSDRRSVPPFGSICLSSLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr09 | 11027989 | 11028291 | + | OsPr106_09g0006340.01 | OsPr106_09g0006340.02,OsPr106_09g0006340.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.017714 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0334800 | RBH | 0.142329 | 0.582640 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g16540 | RBH | 0.096138 | 0.391417 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0334800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006120 | RBH | 0.055991 | 0.0 | 0.370119 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006140 | RBH | 0.0 | 0.314848 | 0.655696 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006380 | RBH | 0.0 | 0.0 | 1.306906 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006500 | SBH | 0.0 | 2.470027 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0179900 | RBH | 0.3195635 | 2.1402855 | 0.0960015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006480 | RBH | 0.0 | 0.0 | 0.460536 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0156900 | RBH | 0 | 0.027686 | 0.026255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006290 | RBH | 0.0 | 0.052067 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006150 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006060 | RBH | 0.0 | 0.0 | 0.098645 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006120 | RBH | 0.0 | 0.817372 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006480 | RBH | 0.0 | 0.0 | 0.102040 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006330 | RBH | 0.0 | 4.313040 | 0.462668 |
