Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_09g0000110 | OGI:09000290 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr09:203272-207709 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTGGAAGAATAAAGATGATCCTCAACTTCATTCCGGCGCCCCATTTTCTATCGGGCAAAACTAAGTGCCACTACGCCTTGGTGACTTTGTTACAACCTACTTAGTAATCAGTAATCACAAAATAGAATTAGCAAGCTCTCAGATGTTCCAAAATAGACAAGCATGAACCAGGAGCACAGAACATTGAGGACCAAAGGAGAAGAACAAAAGCATTTGCACCAGCCTATATACTAATTCAGCTATCTTTACATTAATTTAGCAGCACACGGCCAATTCCTCCACCTTGGGGACAGCATGCTCCATCTCAGTCACTCTAGCTTCCTGCATGTCCTGAGATTGCTGCAATACAATATATAGACAATGGTTAGCATACCGCTACCAAATCTTTCGAAAGTCGAAAATCACATGACAAAAGTACGTAACATTTGTCTCAATTCAACTAGCAAAGAAAACAGAACTTGTTGGCATATTCTCTACTACTTAAAAAGAGAGGTGTTTCCGTCGCCCTTCGCACAGTTCTTTCATCTGTTGCTTCACGTTCGAGTTTGATTTCCTTGGCGTTGCCCTTCCTCCACCTGTTCTTCAGGTTCCGGAGTCTGAATCCAATCCCCAAACTCTATCACTATATCAACCATGATCTGTCCACTTCTGCTACGGGGAACCGCCGCAAGGCGTTCGAACTCCCGCACCGATCACTCGCATGTCTTCCTTCCCTGATCGTTCACATCTTCCTTACCTGGAGCTCAGCCGCAAGGCATTTCCATTTTTATTCCGAGATTGCTTCCTACTAGTAGCTATTAGGTTCAACAAGATCACTTCCAATTCACGGTTTAACAAGGAGAACACTCATTCTGTCGGCGGCCTTCTGTCGGCTTCTGTCGGCGGCCTCGACTACTGTCCCGTCCCGAGTTCTCCCACCTCATACGCCGATTGAGCAGCTGGCAATTTCCATCCCGCGATTAACTTCGCTGGTGTCCTGCTAGCTGTCGCTGCATCCTCGCCAACGAGCACCTGCATGCATGTACTCCTAACGAAGCTTCATGGCAACGATGGATTTCATCTACAATGTAATGTAGGCTGTTGTGCATACTTGGATGGGATCTCTATTCTTGCTCAGATTGCCATCAGGCACAAGCTATGCCTAGATGTCCTCACTGTGGTCCACCCAGTTTGAAACTCTCATTACCATAATATGTGAATGTCATGGGTCATCTCTATAAGTGAATGGTGAATCTTGAAACGTCACCTAATTGATCCACGTAAGCAAAAAAGCCTGGACCATTCGATGAAGGAAAAAAAGGCAGAAAGCCGTAGGATTGAATTAGTGAAACACAGTAAAACTATATCTTCTAGAGCTTTCCAGCACCTCCCCTCACATGTGGACATGTGGTGTGGGTGAGAGAGCAAAGAAAATGAAAAGAAAAAATGTTGCACAGGAACAAAACTAGAAATAGAACTATAGAAGGCTTTCCAAGCAACCCACACAGAACATGACACCAGCAGTCACACATGGTCTTCAAAAACAATTTGCATAAAAGCTTGAGCCTAAGTTCAGAAAAAAAATGCAAAACCCAACACCTAATAATGGTATAATGTGAAAAACAGTCCATCAAAGTAGTCACTTTTTTATCAAGTCCCTATGATTAAATTAGCGTTGGGTACAGCAAATTATATAGGTTATAACACTCATAAAAAAATGTGAATGGAAAAAAGCTAAATTTTAGGACAATTTCATAATAATAAGCAGAGGTATTGGTTTAATTCAAAATTAAAAACTCAGAAACGTATCCTTTCAAAGCAAACGCAGCAATGAAAAATAAAGGTAAGATAAGAGGGACATGCAGCAACGGAGACTGTGGAAAAGCTGGGACTCAGACAATATAGAAGATGGCCCAAATTATGTAAATTTAGTTAACATCTGAATGTAAAGTTTACAATAAATTATTTATTGCACATCAAAAATATATCCGAAATTCGTATTAAGTAGACTTCCAGCTAATTTTATTCTCTAAAACATTAAAAATCTCTAAGCTACATAATATAAATATAGAGAGAAATTACACAGCTATATTAACAAAAAAAAACTTCGTTCGCCTATTATATTTCATATATTTTCATATGCATAGCACATAAAAAAATTATTAGAGTCGTGTGAATGCACAGCTATATACACTAGTGAAATTAAAATCTAATATAGAGTAAGCACAATTTATTATAGACATGCAAGCAATAAACAACAATATATCTGAAAATGAGTCTTCGCTGAAAACTCTTAAGATGGTATGCATATGTTTATCATGTTGTTATTTAATGCTACAATCAAAGTATGAACATTGCCAACAGCTGCTTTTCCTTAAGGTACATCAAGTTTTATCCTAATGAGAGCAGGGAACGTTCACATACAAGCTAAACTAGCTCACAAGTGATGTGCAATTCACTGTAACTTTTGTGTCGAGATTCCTACCTGAATCATGGGCAACTCGAAACAAACATACTTCCAGTAATCAACTAACTTATGGTCTGCAGGTACCACCTCTGTTGCCCTGCCCGCACAGAAGATTGCATAAGCATCAGCTGCGTACCTGCAGCACAAATCAACTTATTTATTACTAATAATGTGGAAAGATAAGAAACAACATTCTACAAATACTAATATACAGTAGATGAGTTAGGGGACTTACTTGCCAACACCACAAAGCTCAGTAATGTAGGTCCATTCTTCTTCAACATACGCCTTAGAGAATCTCTGGATTCTGTTTACTTTTACACGCTGCAAACCCAGAGGAGCCAGATACTTGGCCATCTTTTCAGGATCAGCACTAAATGCAGCTTGAGCATCAGGATATCGTTTGAAGAACCCCTTAACTTTCCTCCTCACCTACAATGGTTGACAGAGGGTGTTGAAGTACTTCAAATTTACCATTTGAAATATCAGGTCACTCACCTTTTAAACTATTGCAAACGCTAACCTAGACTCAGTGCTACACTAAAACAAGATATGAAATTTGTAAGCTCTATTGTGCAGCGGCATGACCAACGCAACAAAATGGAAGCTGCTCCTTGTATAAATTACAGAATGCATTTCAGTACTCGATGTTGGTTATGATTTGGAATTACAAATTGCGACAAATGAATACAGTCAACCACTCTTTTGTTGATGAAAGACATGTTTACAAACAAACAAGTAAGATTATTCGTTAGTGGCTAACAGCAACACGTGTAAGCTTAATTTGCTTTTGGTGCTTCTAGGAACTCCTGCCAATCAAACAAGTTAGTTTCTACGATTGTAGGTTTGGTGCAGATCATAAAAAGAAAAAGACAATCAGGCAGGCAGCTCACTTGTTTCCCCTGTGTTAAGTTGAGGAGCATGCAGATGACAATGACCTTCCACGGGTCAGAAGCGTATTTTTCCTGCAGTAGCTTATGAGGGGAGCGTGGCGGAGGCACCAGCTGGTCCAACGGAAGGCGGCGGTATTTGTCTGACCTCTTTTCAGCACGGGTAAGCAGCGGTGCTGGTTTTCGTTCCTTGTTCACCCTTGCCATTTCTTTTACCTTCGTATTTCCTTGGTTTGGTCCTGATCTTGTCTTAAAGGTTGTTGTCTTACAGGTGCTGTTGATCTTGTAGGTGTGATTTGTCATGAGCTGAGATGAAGCAGATGATAGATGATCCCGAGGCGGCGGCCTGACTAGAAGGTCAGGCGTTCTAGGAAGTGGGGGAGTGCGATCTTGGCGGGTGGGTTTGTAGCAGAACTGGTCAAAGAAGGCGCCGAATGGCGAAGAATGATTGGGGTCCTGCTGGATGGAATTGGAATTGGAAGCCATAATTGTCTCTGGGTCAAAAATGCCTTGAGGCAGTGGCTGGTGCTTCCTCAATTGTATCCTCATCTTGATGATCTCGCGGTTGCTCAGGACGCGGATCTTCTTGCAGCTACTCCTGCAATACGCTTCATCTCGTCCTCCGCCCAGTGGAGGAGGGTTTGCTTGTACCTGGATGCCGTGGATTTGGTCATGAGGTGACTGCCTTGGCATCAGCATCCGCTTCCGCTCCTTCCTCCTCGCCTCCGGGGCCGGTGGCCCCTCCCTACTCTTTCGCTTTTTCTCCTTCTTCCCCACGCCCGCGGCCTCCTCTTTCTTCCTCTTCCGCTCCTTTCTCCTCACCGCCACCGCCACCGCCTCTCCCGAGATTGGGGTTTCGGGGTTGGGCGGGGTCTCTTCAGCCGCCGTCAGGTGGGGAAAAGGTAACGGGGCCAACATCTCCTCCGCCTGCTTCTTCCGCTTCTGCAGAATCGCCTCCTCTGCCGCCGCCATGGGCAACTGCGGCGATGTGGAACAGAGGAGAGGAGGGGACGGAGGGGGATTTTGCTACCGGCGAGGGTTTTCCGCCCTTTCCTCTCCCTCCTTTTTTCTCTCTCTCTCTCTCTTTTTGTGGTGTTTGTGG
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| CDS seq | ATGGCGGCGGCAGAGGAGGCGATTCTGCAGAAGCGGAAGAAGCAGGCGGAGGAGATGTTGGCCCCGTTACCTTTTCCCCACCTGACGGCGGCTGAAGAGACCCCGCCCAACCCCGAAACCCCAATCTCGGGAGAGGCGGTGGCGGTGGCGGTGAGGAGAAAGGAGCGGAAGAGGAAGAAAGAGGAGGCCGCGGGCGTGGGGAAGAAGGAGAAAAAGCGAAAGAGTAGGGAGGGGCCACCGGCCCCGGAGGCGAGGAGGAAGGAGCGGAAGCGGATGCTGATGCCAAGGCAGTCACCTCATGACCAAATCCACGGCATCCAGGTACAAGCAAACCCTCCTCCACTGGGCGGAGGACGAGATGAAGCGTATTGCAGGAGTAGCTGCAAGAAGATCCGCGTCCTGAGCAACCGCGAGATCATCAAGATGAGGATACAATTGAGGAAGCACCAGCCACTGCCTCAAGGCATTTTTGACCCAGAGACAATTATGGCTTCCAATTCCAATTCCATCCAGCAGGACCCCAATCATTCTTCGCCATTCGGCGCCTTCTTTGACCAGTTCTGCTACAAACCCACCCGCCAAGATCGCACTCCCCCACTTCCTAGAACGCCTGACCTTCTAGTCAGGCCGCCGCCTCGGGATCATCTATCATCTGCTTCATCTCAGCTCATGACAAATCACACCTACAAGATCAACAGCACCTGTAAGACAACAACCTTTAAGACAAGATCAGGACCAAACCAAGGAAATACGAAGGTAAAAGAAATGGCAAGGGTGAACAAGGAACGAAAACCAGCACCGCTGCTTACCCGTGCTGAAAAGAGGTCAGACAAATACCGCCGCCTTCCGTTGGACCAGCTGGTGCCTCCGCCACGCTCCCCTCATAAGCTACTGCAGGAAAAATACGCTTCTGACCCGTGGAAGGTCATTGTCATCTGCATGCTCCTCAACTTAACACAGGGGAAACAAGTGAGGAGGAAAGTTAAGGGGTTCTTCAAACGATATCCTGATGCTCAAGCTGCATTTAGTGCTGATCCTGAAAAGATGGCCAAGTATCTGGCTCCTCTGGGTTTGCAGCGTGTAAAAGTAAACAGAATCCAGAGATTCTCTAAGGCGTATGTTGAAGAAGAATGGACCTACATTACTGAGCTTTGTGGTGTTGGCAAGTACGCAGCTGATGCTTATGCAATCTTCTGTGCGGGCAGGGCAACAGAGGTGGTACCTGCAGACCATAAGTTAGTTGATTACTGGAAGTATGTTTGTTTCGAGTTGCCCATGATTCAGCAATCTCAGGACATGCAGGAAGCTAGAGTGACTGAGATGGAGCATGCTGTCCCCAAGGTGGAGGAATTGGCCGTGTGCTGCTAA
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| Protein seq | MAAAEEAILQKRKKQAEEMLAPLPFPHLTAAEETPPNPETPISGEAVAVAVRRKERKRKKEEAAGVGKKEKKRKSREGPPAPEARRKERKRMLMPRQSPHDQIHGIQVQANPPPLGGGRDEAYCRSSCKKIRVLSNREIIKMRIQLRKHQPLPQGIFDPETIMASNSNSIQQDPNHSSPFGAFFDQFCYKPTRQDRTPPLPRTPDLLVRPPPRDHLSSASSQLMTNHTYKINSTCKTTTFKTRSGPNQGNTKVKEMARVNKERKPAPLLTRAEKRSDKYRRLPLDQLVPPPRSPHKLLQEKYASDPWKVIVICMLLNLTQGKQVRRKVKGFFKRYPDAQAAFSADPEKMAKYLAPLGLQRVKVNRIQRFSKAYVEEEWTYITELCGVGKYAADAYAIFCAGRATEVVPADHKLVDYWKYVCFELPMIQQSQDMQEARVTEMEHAVPKVEELAVCC |
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| Function | Methyl-CpG-binding domain protein 4-like protein [UniProtKB/Swiss-Prot:Q0IGK1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_09g0000110 | OsPr106_09g0000110.01 | Chr09 | 203272 | 207709 | - | NAM | ||
| CDS seq | ATGGCGGCGGCAGAGGAGGCGATTCTGCAGAAGCGGAAGAAGCAGGCGGAGGAGATGTTGGCCCCGTTACCTTTTCCCCACCTGACGGCGGCTGAAGAGACCCCGCCCAACCCCGAAACCCCAATCTCGGGAGAGGCGGTGGCGGTGGCGGTGAGGAGAAAGGAGCGGAAGAGGAAGAAAGAGGAGGCCGCGGGCGTGGGGAAGAAGGAGAAAAAGCGAAAGAGTAGGGAGGGGCCACCGGCCCCGGAGGCGAGGAGGAAGGAGCGGAAGCGGATGCTGATGCCAAGGCAGTCACCTCATGACCAAATCCACGGCATCCAGGTACAAGCAAACCCTCCTCCACTGGGCGGAGGACGAGATGAAGCGTATTGCAGGAGTAGCTGCAAGAAGATCCGCGTCCTGAGCAACCGCGAGATCATCAAGATGAGGATACAATTGAGGAAGCACCAGCCACTGCCTCAAGGCATTTTTGACCCAGAGACAATTATGGCTTCCAATTCCAATTCCATCCAGCAGGACCCCAATCATTCTTCGCCATTCGGCGCCTTCTTTGACCAGTTCTGCTACAAACCCACCCGCCAAGATCGCACTCCCCCACTTCCTAGAACGCCTGACCTTCTAGTCAGGCCGCCGCCTCGGGATCATCTATCATCTGCTTCATCTCAGCTCATGACAAATCACACCTACAAGATCAACAGCACCTGTAAGACAACAACCTTTAAGACAAGATCAGGACCAAACCAAGGAAATACGAAGGTAAAAGAAATGGCAAGGGTGAACAAGGAACGAAAACCAGCACCGCTGCTTACCCGTGCTGAAAAGAGGTCAGACAAATACCGCCGCCTTCCGTTGGACCAGCTGGTGCCTCCGCCACGCTCCCCTCATAAGCTACTGCAGGAAAAATACGCTTCTGACCCGTGGAAGGTCATTGTCATCTGCATGCTCCTCAACTTAACACAGGGGAAACAAGTGAGGAGGAAAGTTAAGGGGTTCTTCAAACGATATCCTGATGCTCAAGCTGCATTTAGTGCTGATCCTGAAAAGATGGCCAAGTATCTGGCTCCTCTGGGTTTGCAGCGTGTAAAAGTAAACAGAATCCAGAGATTCTCTAAGGCGTATGTTGAAGAAGAATGGACCTACATTACTGAGCTTTGTGGTGTTGGCAAGTACGCAGCTGATGCTTATGCAATCTTCTGTGCGGGCAGGGCAACAGAGGTGGTACCTGCAGACCATAAGTTAGTTGATTACTGGAAGTATGTTTGTTTCGAGTTGCCCATGATTCAGCAATCTCAGGACATGCAGGAAGCTAGAGTGACTGAGATGGAGCATGCTGTCCCCAAGGTGGAGGAATTGGCCGTGTGCTGCTAA
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| Protein seq | MAAAEEAILQKRKKQAEEMLAPLPFPHLTAAEETPPNPETPISGEAVAVAVRRKERKRKKEEAAGVGKKEKKRKSREGPPAPEARRKERKRMLMPRQSPHDQIHGIQVQANPPPLGGGRDEAYCRSSCKKIRVLSNREIIKMRIQLRKHQPLPQGIFDPETIMASNSNSIQQDPNHSSPFGAFFDQFCYKPTRQDRTPPLPRTPDLLVRPPPRDHLSSASSQLMTNHTYKINSTCKTTTFKTRSGPNQGNTKVKEMARVNKERKPAPLLTRAEKRSDKYRRLPLDQLVPPPRSPHKLLQEKYASDPWKVIVICMLLNLTQGKQVRRKVKGFFKRYPDAQAAFSADPEKMAKYLAPLGLQRVKVNRIQRFSKAYVEEEWTYITELCGVGKYAADAYAIFCAGRATEVVPADHKLVDYWKYVCFELPMIQQSQDMQEARVTEMEHAVPKVEELAVCC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.234673 | 0.000000 | 9.498338 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0101100 | RBH | 0.723601 | 0.333877 | 3.460811 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g01290 | RBH | 0.476139 | 0.415744 | 0.378439 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0101100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0000030 | RBH | 0.217265 | 4.511599 | 3.354256 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0000030 | RBH | 0.221365 | 0.617696 | 0.533489 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0000030 | RBH | 0.933932 | 0.0 | 4.942244 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0000100 | RBH | 0.118866 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0001700 | RBH | 3.1708905 | 11.083232 | 8.3805025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0000110 | RBH | 0.194825 | 0.228747 | 1.013372 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0007400 | RBH | 2.4220505 | 11.852555 | 11.0084565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0000110 | RBH | 0.329402 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0000090 | RBH | 0.416333 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0000100 | RBH | 16.054071 | 10.748333 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0000090 | RBH | 0.395312 | 0.000000 | 0.637011 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0000110 | RBH | 0.268958 | 0.576243 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G000090 | RBH | 0.474462 | 0.929897 | 1.429537 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0000090 | RBH | 0.742133 | 0.0 | 4.893823 |
