Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_08g0009450 | OGI:08029840 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr08:10545901-10556259 | ||||||||
| Gene Symbol | PSF3, PSF3 | ||||||||||
| DNA seq | tcgcggccttcggcctcccattctcgagtaacatcacagcaaccgagcattcgagcaactgcaacggtgagtcgccgagtcggtgaactgaagtgtattgattattttagcttcatagtttatgaatgactatctagattactagattaggatttaggaaccaccgaacctgtgctgctttgctagtttgctcaattgctctttgatattgttgtttgtaggtttgaaacatgaagagaaaaaaagggtcccatggttaatttaaagagtttttttagaaaaagttgctaaaaaaaagaaatcaagaaccaactggttctttgctcgcggtttgtcaataaGacgggacaactagttgaacggtttcttggtcttggttttgtatgctcaataaattaacgcattcaatttatggtcaattctattcatttataactttatgaaatcatgtttatacctttacatattatagaactattagaccttgggttggaaaaTtttctctcacttacaatttcgaatacccaagttgaaaaacctgggcccgatctcgtcgcaactccggttcgtgtagttcggcgcagcgccatcgtcggcgggggtggcgggcacccactgccgcggaagatgtcgcagtccctaattacgagctacccacgagccaaacaaggtagagCcctacaaggagtacaattggaagcccgcgggtgcgcagtccatcaaaagattcaaaaccacggccatagcagccgcaacatccctcggcccatgtcatagcctcaaagagacaaatacgtgcgcatcaggaataagttcactttgtgaccctcaggagtgatcgaaatctaatccgtgaccctaaaccacaaaaccggatatctcgacccccaaactcttaaaaccaatacaaatttactccctcggcggttttgtagagcggtttcactgacgtggcgcctacgttgcgatattgaccgagtctttgttccacgtggcattgacgtggcacttacgtggcattagaattaaaaaatatgcgtgggacccgtttgtcattcaCacaaaaagaaatgtgggcccactaacatgtggggcccacatgtcagtcctcccttcttcctcctccctctctccctcctctctcgttctctccccttcttccccttcggcaggcggcggggcatgggccgcggtgtggtggtggtggcggtgggttggagctgatacgggttctggagtagggagctcattctcccggtcgatggcgacggcgatgatggagacaagggagcggataaggctgggtagtcggtgccacgatggggttgaggctgaggctgcgaggggagctcatcccctgggtcgatggcgtcgatggccgtggatctcggctCGAcgaagaggcggtagccacccccctccggcggtggtgccacggtccccggagtggagtcgacgatgctgaggccaacgctcggcgagatgggatctgcgtgttcgacatcaggctggccaacgccgacaggcacgccggcaacatcctcacttgcagagacaaacaaggccatggcctctccctggttccaatcgaccatggatactgtcttcctgagagtgtaagcactgacgctgacattttcttctagctaattgacttccattttgttcgttggtgatcatgcatcgatcacgcatgtgcagtttgaggattgcatattcgagtggttctactggccgcagtgtcgggagccattcagcgaggagacggtggagtacataaggtcactggacgctgaggaggacatcgccattctgaggtaccatggctgggagatgccagccaagtgcaagcgcgtcctgcgcgtcaccaccatgctgctcaagaaaggcgtggacacgggcctcgccgcgttcgacgtggggagcatcgtgtgcagggatggggccaggcggtcctgggagtggaggagtcgacgatggcgaggccagcgctcggcgagatggggtcagcgtcgtggaggaagtcgaccggcgggggttgtccttggcgtcgtcgatggccgacgacggaggcggaggttgaaggcagcggcccacgcactggcctcgctcgccggccgacacggaggagccagtgtcgtccttcgccgccgccgctgccgctccggccctcgccaaatggaagaggggaggaagaagaaagagagatgagttagtggtccccacaaatttttgtgtgtgaatgacaaacgggtcccacacatattttttaattctcatgccacgtaagtgccacgtcaacgccacatggaacaaagactcggtcaatatcgccatgtaggagccacatcagtgaaaccgtcctccaaaaccgctgagggagtcaaattgcactggttttagaagtttgggggtcgagatatccggttttgtggtttaggatcacaaattagatttcaatcacttttgagggtcacaaagtgaacttatttctgcgcatcaaccagcgcgagtgcgtgactgcgagagcccaagcagatcgcgaacgctctcatcaactagggccacatcgtgcagccaatgcctaccaagccctacgcctaccttaacatcttcacgacctagtgaagctgatttgcttcattcacttcgccttatttgcttcacttgattatctgtttgcttctgatttgctggtgcacatcgcttgattcacttctccccttcggcctcaccctcatgcaaggttgtcatatcatgatccatattctagtttcttacgatactatgatcctgtcaaattgaaacgataccaatcccgtctagtaccctatctttcatagtgtctcgatcctattgtttactttcacatatcgtatgaaatcttaggtgctatcctgattctatggtgtctacgatcctataaaatattatttaaaataaggtggattgataataatatgaataaatatgctcaagtttacaataaaaaccaattaaatttatcaaaatcattattatatgctttaatttatataatgtattattatattttatataaaaatacgtaatttctaaaatattatagtatctcgatcatcctatggtagtatcttataatactataatactacaaatcgaaaaattatcctacggctccattcgcttcttttgtaaatgaagattaaaagcgggtacgtaaaacaaggaaaccattaacacgtaattaattaagttttagttattacaaacttgagaaatggatttatctaatattttaaagcaacttctatatatataaagttttcgtataaaatatattgtttagcagtttgaaaaacgtgccaacgaaaaacgaggaaaaatatgaatctttcaTtttaatgaaagttagaacggggcctatatctaaatagtgattatcttgcccttacgtagctaaacgagcctagctcgttatgttggcacgagccaaccggagctggctcggctctactctactcgtttttgtttgagcgggaaagccgaaagaaacccgcgaagccaaaattccccaccgctgccgcggcggaaacaactccgatcttggacaccgacactgcaCcccgacggaaatccacgcggagaacggaaatcgcccccccccctcctctttgatcctctctaagcacgactgcattgcacgaggttggttgttgcgagTtttggcggcggggcgctgcccgcgtagtcgcccggctcgtgcagtcgcagttgagcggggcgagggcactggccgctggggcgagcaggaggcggctggcaacgggcggcgacgcactgcgcctgtgcggatctggcgcgtggaagcaggcggtcggtggtgaggcaggaggttGgggggagggcgtggcaggaggcgcgcttctccgcggagctggtctgctctctgctgcatgcattcttttgttgtattgttgaatttcaatgagattttattggatttatgagaaattgagccctatgtttcagagttttgatagatttgcaattggggaagaaaacaaaattggttatttgttttacaagcaattctagtaatactcacccaattgatgagggaacaaatcaaccaaatgtcattagctactttgagcccattccccTtttttttggtcctggattcgtgcatttactgctgcttttcatcaatgtgcaacccatttatacagtgtagctgcttatgccaaagggtgacagaaatcaagaataagcaatagtattctgtttgcttggtgcaatgcctggttattacgacatcgatgatatcctgatggaggaggaggtaattttatgattgttttatcgtcttctggtgtgcttgcacaaatatgatctaaatgtgtttctactcttactgcagcctatttcggtagtttttcaagtgagtgcaaatggtgttggactactagatcctggcgctgaaagaaacagtgtaagtgacTtttgcacctatggtttagtgctatggtgtaacttcctagggcacctactgacctttcttcctccatccctattgttctagaaggaagttggtttggaatctatgcagtagttaattgagtttatctgagatgagtgttatatgaccattggattttatttattaaaactgctttggaatgctaggtgtactcttgttggcttgtatgacacattttctagtaaacacaatctggtggtggatgcttttttagtttgtcttgtaaacaccttcacatcaTttcttgctttggttggaaacaaaagtgagagatttgctccagttaaacattgtaTCTtctttatctccaggttgaaaagggtgctaaggtggaccttccattttggcttgcacatgggctgctgtctctggaacaagcagtttcaataaatgtacctccttgcttcacccagaagtaggtttcatcataacttgtttttcattgttgtatacagagaatcttagctagaattcatgtttcaacagatttacatgaaagtacttcttgtcaacttattgtagaggtcttcttcagtaattgcaaatgcctggtagtttcaataTttcctagaaaagttgtcctaagatcataacaacattgctacagaacccggaaggagatccaagctgatgcagcctgtgttgatttgaggattcgttgcccttacttctatgagctaggatgcaagatagtccctttgtaagttctgaaacgatttcaatctcatgcacttttaggatatagttctggcttactacctgcatccgctttttacttgatgccctagaatctgtgctgtcaacaattctaaagtttgaccaccggtaaaagaaagcagagatattatttacctttgtgttaaaaatcttactgaattattagttcatattaaaatgtttctatgtgatatttgatagaatagccacttcattgctttacaaaattttgtccacaaatgaccttattaacatacgctataatacttttcttttacaatgactaagtaattctttcggcgtacaacatacatttttctttgtgcatgtttgtttcaatattataaatgcttttgagtccattgaagatagattctttcATactttcataagacaagttcatcttaaacccttgaactttgcaaaatttctacttaactccaacaaaaaaaaatggatatgtttatctgattatctccagacttcaaacaatagagcaagggtggttttggaggttgttttgccattatggaaaccaacttccatgccataacatcttggaaATaccacattggtaattatcacttcaaataagatcgaaaatacaccaacactcattttatttcagtaatgtctctccttttaatcaacctatctatctttttgctcccCTctcttttatccaaacaaattgcttggtttcacagaaaacaatcatcagcaatagtgagttgctcctctccatattatggctgcagccttgctgatgtcaggcagcggttgtgaaagtgctgcttgatgaacatgacgttgctcaaaacatagctactgtgtgttaataataaaatatatctctgattccaagttggatttgacattggtagatcatccgaaattaaagaaaccaccttcaattgaaactctagtgagaagtataaacaaaaaatgtggaggcagtggtaagagaagaggttggtcggccatgccttgccacttcttggtatctagtcttgctgttcttgttttgcacaattgttattttccatctagtgatttcaggttgtttaacctaatcttcagcttcagtatgttaacaaaccattatgtacagatgatcatgaatcatataaattgctgtgtttgctacagataatattgtatcatacatgttcgatataaatgaatgtctgttttattaacacacccttcgtattttgttaaagcaaacacttgatacatttccacagttctatttgtaaaattagcatatatatatatatatataTAAGCTCTATTATACACCCCTCCCTTAGAATAACTATTCTACACCCCCCTCCCACCTCCCATCCGTCCCCACCTCCTCCCCTCCCATCGCTCCTCTCTCCCTCCTGCGCCCCCTTCCTTCCCGCGCTCCTCTCTCCCCCAGCGCCCCCTCTCCCTCCCGCGCCCCCTCTCCCTCCCGTCGCGCCCCTCTCCCTCCCATCGCTTCTCCCTCCGATTCCCCCTCCTTTTTTTTTTCTCTCCCTCCTCTCTTTTTTAGAAAAATTAAAAATAAATTGGTGAATTCAAGACTTGAACCCATGATCTCATGGTTCATGACAAGCAGTTCTAACCAAATCATCGTATGATGATTTGTGAACAAATCAGTTATGTACCTATAACAATCATACGTTGTTACTATGATTCGGCAGTAACATTATCCCAGAAGCTGCAAaaaatgtataggttgttactgcacttttggcagtaacaatatgacgaaatttgcagtaacagagaacatgcatagtaacagtggccctatagtagtaatttttttagatctatagtattttaaatctcaatatttagagagtactaacgtacacgtcatgtcttatttttctaacccatttgcatcatggcgttcgtaaaaaaaaagtgcttaacgaaactagaaccatcagaactattttttaacgttgttactgcgaaaagcagaggtgttactacatataggccatcgtgttactacgctgttccagtgagacgaggactaaaaaagaggtaaatctcaatctttagagagcaatatctctatcatatcttgtatttccaatctgtttgcaccataaagttcataaaaaaacgcttaacgaaacaagatccatcatggctactttttgacgttgttactgcgataatgtgatcttgttactgcacgatgatcgtcctgttactgcacgattcctgcaagacgagagcagcaaagtggtgggcgggggaggGAGTgAGTGGTGGGCGGGTTTGACCGGCGGGAGGACGCTTTGACCGAGGTGGGAGGGGGGTTTTGGGCCATAGGGAGGGTGGGGGAGGTGGGTTTGGCCCATGGGAGGGGGGGTGTAGAATAGTTATTCTAGGGGAGGGGTGTAGAATAGATTCACTATAtatatatatatataataaataaataaataatcttttgtgctaaatttgtatttagaaggtcgaacaagaaaagctaacaatatgtggaagtactgtcgaagggcaatttgtaaagctgatgtagaggtggagtggtagattcgccaccactaccaccattgcctttttaaaaaagcattatggatattggtaagatttagtttgaatattttgcagattttagttatctccgtaaaccaactgtgataggtttgagtttaggatttgtatgtgatacatgaaaataatcagtagatttgtcctgagaagtactttcagaatattagtcttgttaggtttaacaaatatatattacaataaaaattagcTttcaaagctgtattttgaaggctctacaaatgctgAaaatgacttgtgactgagctttcactatgtgttgttgcctgtttgcttggcaagtttagggttttcagtggcaaaaaggttCccccagaaaagtttaccttttgctttatattttgtatcaaactatgtaatgtttggctttctattaaaagccggatcactcagtgatctgctttctaaaaaaaaattgtgttgctgacttgaatagtagtagagtagctgtgatagatgagggcttcgactaggcctattagaggaacagggagtacagagagacatgtagataattgatctattcttgcctttggaatgcaggagattatggcctgaggatcccttgcaaagtacctaatggagcactgcatgcaactcaaagatattagatagatatttgaatacaactcaataatcaactactagatgatctaatgctgctcttaatgttgttgttgctgcttcactgctcatcgttggccatggcctgcaaccacggcattgtgatgttagcataccttaacttggtgcttcacaatcaacttccctttgtgattgacaattttattaaggcatgcttttgtttcttttattttttttctcaatttcattctatgaatattaaaagaagctcttactttttcggaatgtgattgatcaTtcttttgctgacaatatgttcagatactcgaacaaagtcccttgctgtttcctctatttttgtcagccaaacattcattataaatttcagcagtcctgacaaatgatctctgtgccaccaagacaccagttcaacttacacagaacagagtacatgagaactgtagttgtgctaaggatatcctctaaactttatgagcataagaacatattatattatagatataataattaaaagaaggtaatggtggtgatggcactgtggcggttgcgaatttgccaccccacctatagaatgtctttttatgaccccttcaacatgtctttttatgaatttcccaccccacttattgtagatcttgagcatgtttatttctccttatttgccttacaaagaaaaataatattcagtatgggaagttccaaaatggccgaactgtcacatatagatggacttgtttggtgcaaaaatcatttgtatatttgggcaatattagacttagcaagtgtatttggttgttctgcagaacatttgaaggattgccttgtcagatgctccagtgtgttttgccttcagttttactggccaatagaacagtcatggaactactcatttggtctctcgctttagtgttgggtgtgagcaactggattaacatttggagctaccagtctaccacttatacatgatttgttcatgctcaccgttagtcatcctctcgggattcagcttttcctaatggttacggtattttcataataaaggtgcaatgaggacagagaacaaagtccacaatgaatttggagatgcacttctagagagggagtccactgctgttgtcactattttcttgcagtctgtcaagaagagttAagaatctgatgatgaagttatttatctagtgatctgtgggattattagatgtttggatgctgatatcttattaaaatggtgtactttgcacatgcagaggtgtataatgatttattcgtttgcatggttgtgtaaacagggtgaacgacaggagcattggactgttcttgcgctatgcattcactagtaggtacaaggagatactaagcaagtcacacagctcttccatgatgacagtgcccaagtttgttccgcgccttacaaaagaagaagctcaaggtaaatacttctcccaactctgattttactcatcatcctgcatttcttccattaccattccaagctcccaactattatcacttcaagtaaccctttttttttctgtcgcgaagtgttcgaatctgctagggactcgatgaccgctttcaagaagtggcgcgctggcggtgtgaggctgcagaaagcgtccattcttggtaggaaaaggaagacaaaactgcctgatggaccttctgcaccttgaaccatgctttaggttcttctgtatggaaaatcgtacttgagctgatgtatgtatacttcattaatatgtcgctgtaagagaagaccaaaagtgaaacaattccgttcggagatcacacgtttgtgcattctaatctgGTggctggccaaccaacacagcctcttgaacaaagggcagttagttattatattccttccttttggaatcaccgaaacgcgtaatacataTtttaactgc
More
|
||||||||||
| CDS seq | atgcctggttattacgacatcgatgatatcctgatggaggaggagcctatttcggtagtttttcaagtgagtgcaaatggtgttggactactagatcctggcgctgaaagaaacagtgttgaaaagggtgctaaggtggaccttccattttggcttgcacatgggctgctgtctctggaacaagcagtttcaataaatgtacctccttgcttcacccagaaaacccggaaggagatccaagctgatgcagcctgtgttgatttgaggattcgttgcccttacttctatgagctaggatgcaagatagtccctttggtgaacgacaggagcattggactgttcttgcgctatgcattcactagtaggtacaaggagatactaagcaagtcacacagctcttccatgatgacagtgcccaagtttgttccgcgccttacaaaagaagaagctcaagtgttcgaatctgctagggactcgatgaccgctttcaagaagtggcgcgctggcggtgtgaggctgcagaaagcgtccattcttggtaggaaaaggaagacaaaactgcctgatggaccttctgcaccttga
More
|
||||||||||
| Protein seq | MPGYYDIDDILMEEEPISVVFQVSANGVGLLDPGAERNSVEKGAKVDLPFWLAHGLLSLEQAVSINVPPCFTQKTRKEIQADAACVDLRIRCPYFYELGCKIVPLVNDRSIGLFLRYAFTSRYKEILSKSHSSSMMTVPKFVPRLTKEEAQVFESARDSMTAFKKWRAGGVRLQKASILGRKRKTKLPDGPSAP |
||||||||||
| Function | Probable DNA replication complex GINS protein PSF3 [UniProtKB/Swiss-Prot:Q54EH6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_08g0009450 | OsPr106_08g0009450.01 | Chr08 | 10545901 | 10556259 | + | NAM | ||
| CDS seq | atgcctggttattacgacatcgatgatatcctgatggaggaggagcctatttcggtagtttttcaagtgagtgcaaatggtgttggactactagatcctggcgctgaaagaaacagtgttgaaaagggtgctaaggtggaccttccattttggcttgcacatgggctgctgtctctggaacaagcagtttcaataaatgtacctccttgcttcacccagaaaacccggaaggagatccaagctgatgcagcctgtgttgatttgaggattcgttgcccttacttctatgagctaggatgcaagatagtccctttggtgaacgacaggagcattggactgttcttgcgctatgcattcactagtaggtacaaggagatactaagcaagtcacacagctcttccatgatgacagtgcccaagtttgttccgcgccttacaaaagaagaagctcaagtgttcgaatctgctagggactcgatgaccgctttcaagaagtggcgcgctggcggtgtgaggctgcagaaagcgtccattcttggtaggaaaaggaagacaaaactgcctgatggaccttctgcaccttga
More
|
|||||||
| Protein seq | MPGYYDIDDILMEEEPISVVFQVSANGVGLLDPGAERNSVEKGAKVDLPFWLAHGLLSLEQAVSINVPPCFTQKTRKEIQADAACVDLRIRCPYFYELGCKIVPLVNDRSIGLFLRYAFTSRYKEILSKSHSSSMMTVPKFVPRLTKEEAQVFESARDSMTAFKKWRAGGVRLQKASILGRKRKTKLPDGPSAP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.954364 | 45.113361 | 21.518291 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0274700 | RBH | 6.287529 | 3.122322 | 8.185484 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g17294 | RBH | 3.484680 | 2.105598 | 1.708646 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0274700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0009450 | RBH | 3.315624 | 19.690512 | 7.814983 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0009590 | RBH | 0.827030 | 2.307740 | 2.474445 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0009510 | RBH | 0.959753 | 0.648830 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0009480 | RBH | 1.718422 | 0.370534 | 0.976010 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0163000 | RBH | 20.4427915 | 43.2926635 | 27.693262 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0009000 | RBH | 0.578181 | 0.323683 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0009220 | RBH | 1.007700 | 28.625015 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0009070 | RBH | 17.500975 | 38.733597 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0009870 | RBH | 2.314142 | 0.000000 | 2.313037 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G009360 | RBH | 1.558005 | 2.163963 | 6.360096 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0009300 | RBH | 7.530571 | 23.764643 | 15.672661 |
