Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_08g0008890 | OGI:08027400 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr08:9716306-9719356 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaccgaataatcacatctagagcttcgccatgaagctgttggcattgctgttgaagcccaggcatccacagcaaggagatcttccgcatgcgagctcccagtgagagctgccgcaaactgcccaacctgtcaacgctcgttaatctcggacaacgtcgcacattcagccgttccaccacagggaggttagagaccctctccaagcatccacatcctgtgatcagaaggagatctgaaaggaaatgtaggttctccacaatcttcagacgtcctgcctttcttaactggaggattctcaagctgccggcttgagcgagctgctctgggagtgctctcagctttgggcaacgcgcaatatccaacttctccaagcgaggaaacagctgcagtcttggaaacatggcttctcgttttcgcttggcttccgcgccatcatttgctccttctgtagttgctaaagaatcttgttcgacaatggaccactcctcccagttaggcagattgtcgatgatcaaccattctagcttggggaaagctacagcctctgagaatgttggattacctgccagacggccaacaaattcaggtccaatcttgctaactgaagttgctccaacaattctcagatatctcaggttgggtaattggccaagcggtggaagatgaacccacaatttgcaatgtatgatgttcaagtattttagtgaagacaagtaggtactgcatagccaggtgggatacctccgaccaaaaaatccttcaatgactagatcttcaaggctatgtggagggattagtagctcaaagatcttctctatattgttaacatccacttctaagtatggtcggttcttgtgtttggtgcagcatagagacaatattttgagagattttttgccaagtagaattggatctgtactatgatgaaccgctctttccaatttaatgatagtaatccttctcaagtgcaaaagaggaaccaactcttctaagggccatccatattgtgtactagtgttaccattgtcacttccaataggaaatccttctaaatcattgagaagcttcaaccggcttatgccttttggaacctgatttattggtgtttggcgaagacaaaggcaccttaagttgtgcaattgagtggttgccaaaggaagagtttgtaaacctccacatcccggcaaattcaatattcgaaggttttttagagaaccaatggattccggaagacaagttacgctggtactttctagatcaagcaagcgtaaatggatcaaatttcctatgtaacttggaatactttgtatttgtgaacccgtcaaatccaaaacacgaagatgtagaaatctcttgaaaatggtatcctcgactctcagtgaccaagacgcaattgcgaaagtcctcactttgacttgctccttgcctatgctaggtatcaccaccatatccttctctgtgacaactgaaatacatctgagtctacacaatatgttgcctcctaatgattctgggtctccgacaaaacattcatctcttgtcaaatgacaagcgagttgccttatgagatcgtgcattttgcatacgttatgaagaaaatttgaataatctggttgaagaaggttccgatgaaccaactcatagtagtattcttctgccgtatcttcaagtagttggccttcttgctcctctataaatccctcagcaatccacatcttggtaatatcatcatggtaaatgtctgaatcttcagtatatacaacacaatacttaaaacattgctttaagtgttgtggtaggtcttcataacttagatacaaagcaccacttatctcactaggaagcttgtccattgaccaactacttttgttcaaaatctttttccattcattctgtgattgatctctagatgctaaaactctggcgataaccatgattgcaagaggaagtcgaccacattttcgaacaatctcaatCcctatgtccttcagattctgcacttgtttctcgtcagtgatgttcatgctcttccagagtagttcccatccgacatcgactgacatcaaatcaactcgatggatatatctagccccaagttcttgaggaatactgtcataccgagtagtaaaaataattgttcctgtAGCagcagcatgcaatggagtccttaacaggttagtccatacatctgactgccaaacatcatccaaaacaaggaaaaaactcttctctttaatggctgatgtgagcttgctttgtagctctccgattgattcatcgatgtcatggcgaacttccatgatccgaagaatttgtctcagaacagaagctttagagtactctttggaaacacagacccatgcctgcttgtcgaaatttcctttcaacgttatatcattatatattttctgagctagtgttgtcttaccgactcctcctgttccaacaataacaaccttgtaggctttcttatccttgtttgcaagtatcaagttcactaatttgctgcaagcatgcatgacctcctttcctacaaggttaggctcaacaaggtgggaactaattgtcactttggatgctgatgaactttttccagtggattgtgcactatattcaggtgtcaaaaaaattttatcctttgcaatgctctctattatcttgttgagattattgatcttaacaccaatctcacgacgcttacgaatattagagaaacaagagaaaggagaaaacccagtgcatgaatttggtttgcctgatgatccttgaggatgatctgctagtagcttgcttccttcagatctagctaagtcgataatatcatcagcatcgtacatcgcatcttttagccgaccaagccattttccacatgctgagtcttctatccccctttgctcggcatcattgagaaagggttttatttgctccattctttgctgcagttccatgagatcttctttcaccccaagaatcagtattgcttcctctgtaattgccttttgcagttcgttgaggcataatccaacaaaactatctattatggctgccat
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| CDS seq | atggcagccataatagatagttttgttggattatgcctcaacgaactgcaaaaggcaattacagaggaagcaatactgattcttggggtgaaagaagatctcatggaactgcagcaaagaatggagcaaataaaaccctttctcaatgatgccgagcaaagggggatagaagactcagcatgtggaaaatggcttggtcggctaaaagatgcgatgtacgatgctgatgatattatcgacttagctagatctgaaggaagcaagctactagcagatcatcctcaaggatcatcaggcaaaccaaattcatgcactgggttttctcctttctcttgtttctctaatattcgtaagcgtcgtgagattggtgttaagatcaataatctcaacaagataatagagagcattgcaaaggataaaatttttttgacacctgaatatagtgcacaatccactggaaaaagttcatcagcatccaaagtgacaattagttcccaccttgttgagcctaaccttgtaggaaaggaggtcatgcatgcttgcagcaaattagtgaacttgatacttgcaaacaaggataagaaagcctacaaggttgttattgttggaacaggaggagtcggtaagacaacactagctcagaaaatatataatgatataacgttgaaaggaaatttcgacaagcaggcatgggtctgtgtttccaaagagtactctaaagcttctgttctgagacaaattcttcggatcatggaagttcgccatgacatcgatgaatcaatcggagagctacaaagcaagctcacatcagccattaaagagaagagttttttccttgttttggatgatgtttggcagtcagatgtatggactaacctgttaaggactccattgcatgctgctGCTacaggaacaattatttttactactcggtatgacagtattcctcaagaacttggggctagatatatccatcgagttgatttgatgtcagtcgatgtcggatgggaactactctggaagagcatgaacatcactgacgagaaacaagtgcagaatctgaaggacataggGattgagattgttcgaaaatgtggtcgacttcctcttgcaatcatggttatcgccagagttttagcatctagagatcaatcacagaatgaatggaaaaagattttgaacaaaagtagttggtcaatggacaagcttcctagtgagataagtggtgctttgtatctaagttatgaagacctaccacaacacttaaagcaatgttttaagtattgtgttgtatatactgaagattcagacatttaccatgatgatattaccaagatgtggattgctgagggatttatagaggagcaagaaggccaactacttgaagatacggcagaagaatactactatgagttggttcatcggaaccttcttcaaccagattattcaaattttcttcataacgtatgcaaaatgcacgatctcataaggcaactcgcttgtcatttgacaagagatgaatgttttgtcggagacccagaatcattaggaggcaacatattgtgtagactcagatgtatttcagttgtcacagagaaggatatggtggtgatacctagcataggcaaggagcaagtcaaagtgaggactttcgcaattgcgtcttggtcactgagagtcgaggataccattttcaagagatttctacatcttcgtgttttggatttgacgggttcacaaatacaaagtattccaagttacataggaaatttgatccatttacgcttgcttgatctagaaagtaccagcgtaacttgtcttccggaatccattggttctctaaaaaaccttcgaatattgaatttgccgggatgtggaggtttacaaactcttcctttggcaaccactcaattgcacaacttaaggtgcctttgtcttcgccaaacaccaataaatcaggttccaaaaggcataagccggttgaagcttctcaatgatttagaaggatttcctattggaagtgacaatggtaacactagtacacaatatggatggcccttagaagagttggttcctcttttgcacttgagaaggattactatcattaaattggaaagagcggttcatcatagtacagatccaattctacttggcaaaaaatctctcaaaatattgtctctatgctgcaccaaacacaagaaccgaccatacttagaagtggatgttaacaatatagagaagatctttgagctactaatccctccacatagccttgaagatctagtcattgaaggattttttggtcggaggtatcccacctggctatgcagtacctacttgtcttcactaaaatacttgaacatcatacattgcaaattgtgggttcatcttccaccgcttggccaattacccaacctgagatatctgagaattgttggagcaacttcagttagcaagattggacctgaatttgttggccgtctggcaggtaatccaacattctcagaggctgtagctttccccaagctagaatggttgatcatcgacaatctgcctaactgggaggagtggtccattgtcgaacaagattctttagcaactacagaaggagcaaatgatggcgcggaagccaagcgaaaacgagaagccatgtttccaagactgcagctgtttcctcgcttggagaagttggatattgcgcgttgcccaaagctgagagcactcccagagcagctcgctcaagccggcagcttgagaatcctccagttaagaaaggcaggacgtctgaagattgtggagaacctacatttcctttcagatctccttctgatcacaggatgtggatgcttggagagggtctctaacctccctgtggtggaacggctgaatgtgcgacgttgtccgagattaacgagcgttgacaggttgggcagtttgcggcagctctcactgggagctcgcatgcggaagatctccttgctgtggatgcctgggcttcaacagcaatgccaacagcttcatggcgaagctctagatgtgattattcggtga
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| Protein seq | MAAIIDSFVGLCLNELQKAITEEAILILGVKEDLMELQQRMEQIKPFLNDAEQRGIEDSACGKWLGRLKDAMYDADDIIDLARSEGSKLLADHPQGSSGKPNSCTGFSPFSCFSNIRKRREIGVKINNLNKIIESIAKDKIFLTPEYSAQSTGKSSSASKVTISSHLVEPNLVGKEVMHACSKLVNLILANKDKKAYKVVIVGTGGVGKTTLAQKIYNDITLKGNFDKQAWVCVSKEYSKASVLRQILRIMEVRHDIDESIGELQSKLTSAIKEKSFFLVLDDVWQSDVWTNLLRTPLHAAATGTIIFTTRYDSIPQELGARYIHRVDLMSVDVGWELLWKSMNITDEKQVQNLKDIGIEIVRKCGRLPLAIMVIARVLASRDQSQNEWKKILNKSSWSMDKLPSEISGALYLSYEDLPQHLKQCFKYCVVYTEDSDIYHDDITKMWIAEGFIEEQEGQLLEDTAEEYYYELVHRNLLQPDYSNFLHNVCKMHDLIRQLACHLTRDECFVGDPESLGGNILCRLRCISVVTEKDMVVIPSIGKEQVKVRTFAIASWSLRVEDTIFKRFLHLRVLDLTGSQIQSIPSYIGNLIHLRLLDLESTSVTCLPESIGSLKNLRILNLPGCGGLQTLPLATTQLHNLRCLCLRQTPINQVPKGISRLKLLNDLEGFPIGSDNGNTSTQYGWPLEELVPLLHLRRITIIKLERAVHHSTDPILLGKKSLKILSLCCTKHKNRPYLEVDVNNIEKIFELLIPPHSLEDLVIEGFFGRRYPTWLCSTYLSSLKYLNIIHCKLWVHLPPLGQLPNLRYLRIVGATSVSKIGPEFVGRLAGNPTFSEAVAFPKLEWLIIDNLPNWEEWSIVEQDSLATTEGANDGAEAKRKREAMFPRLQLFPRLEKLDIARCPKLRALPEQLAQAGSLRILQLRKAGRLKIVENLHFLSDLLLITGCGCLERVSNLPVVERLNVRRCPRLTSVDRLGSLRQLSLGARMRKISLLWMPGLQQQCQQLHGEALDVIIR |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_08g0008890 | OsPr106_08g0008890.01 | Chr08 | 9716306 | 9719356 | - | NAM | ||
| CDS seq | atggcagccataatagatagttttgttggattatgcctcaacgaactgcaaaaggcaattacagaggaagcaatactgattcttggggtgaaagaagatctcatggaactgcagcaaagaatggagcaaataaaaccctttctcaatgatgccgagcaaagggggatagaagactcagcatgtggaaaatggcttggtcggctaaaagatgcgatgtacgatgctgatgatattatcgacttagctagatctgaaggaagcaagctactagcagatcatcctcaaggatcatcaggcaaaccaaattcatgcactgggttttctcctttctcttgtttctctaatattcgtaagcgtcgtgagattggtgttaagatcaataatctcaacaagataatagagagcattgcaaaggataaaatttttttgacacctgaatatagtgcacaatccactggaaaaagttcatcagcatccaaagtgacaattagttcccaccttgttgagcctaaccttgtaggaaaggaggtcatgcatgcttgcagcaaattagtgaacttgatacttgcaaacaaggataagaaagcctacaaggttgttattgttggaacaggaggagtcggtaagacaacactagctcagaaaatatataatgatataacgttgaaaggaaatttcgacaagcaggcatgggtctgtgtttccaaagagtactctaaagcttctgttctgagacaaattcttcggatcatggaagttcgccatgacatcgatgaatcaatcggagagctacaaagcaagctcacatcagccattaaagagaagagttttttccttgttttggatgatgtttggcagtcagatgtatggactaacctgttaaggactccattgcatgctgctGCTacaggaacaattatttttactactcggtatgacagtattcctcaagaacttggggctagatatatccatcgagttgatttgatgtcagtcgatgtcggatgggaactactctggaagagcatgaacatcactgacgagaaacaagtgcagaatctgaaggacataggGattgagattgttcgaaaatgtggtcgacttcctcttgcaatcatggttatcgccagagttttagcatctagagatcaatcacagaatgaatggaaaaagattttgaacaaaagtagttggtcaatggacaagcttcctagtgagataagtggtgctttgtatctaagttatgaagacctaccacaacacttaaagcaatgttttaagtattgtgttgtatatactgaagattcagacatttaccatgatgatattaccaagatgtggattgctgagggatttatagaggagcaagaaggccaactacttgaagatacggcagaagaatactactatgagttggttcatcggaaccttcttcaaccagattattcaaattttcttcataacgtatgcaaaatgcacgatctcataaggcaactcgcttgtcatttgacaagagatgaatgttttgtcggagacccagaatcattaggaggcaacatattgtgtagactcagatgtatttcagttgtcacagagaaggatatggtggtgatacctagcataggcaaggagcaagtcaaagtgaggactttcgcaattgcgtcttggtcactgagagtcgaggataccattttcaagagatttctacatcttcgtgttttggatttgacgggttcacaaatacaaagtattccaagttacataggaaatttgatccatttacgcttgcttgatctagaaagtaccagcgtaacttgtcttccggaatccattggttctctaaaaaaccttcgaatattgaatttgccgggatgtggaggtttacaaactcttcctttggcaaccactcaattgcacaacttaaggtgcctttgtcttcgccaaacaccaataaatcaggttccaaaaggcataagccggttgaagcttctcaatgatttagaaggatttcctattggaagtgacaatggtaacactagtacacaatatggatggcccttagaagagttggttcctcttttgcacttgagaaggattactatcattaaattggaaagagcggttcatcatagtacagatccaattctacttggcaaaaaatctctcaaaatattgtctctatgctgcaccaaacacaagaaccgaccatacttagaagtggatgttaacaatatagagaagatctttgagctactaatccctccacatagccttgaagatctagtcattgaaggattttttggtcggaggtatcccacctggctatgcagtacctacttgtcttcactaaaatacttgaacatcatacattgcaaattgtgggttcatcttccaccgcttggccaattacccaacctgagatatctgagaattgttggagcaacttcagttagcaagattggacctgaatttgttggccgtctggcaggtaatccaacattctcagaggctgtagctttccccaagctagaatggttgatcatcgacaatctgcctaactgggaggagtggtccattgtcgaacaagattctttagcaactacagaaggagcaaatgatggcgcggaagccaagcgaaaacgagaagccatgtttccaagactgcagctgtttcctcgcttggagaagttggatattgcgcgttgcccaaagctgagagcactcccagagcagctcgctcaagccggcagcttgagaatcctccagttaagaaaggcaggacgtctgaagattgtggagaacctacatttcctttcagatctccttctgatcacaggatgtggatgcttggagagggtctctaacctccctgtggtggaacggctgaatgtgcgacgttgtccgagattaacgagcgttgacaggttgggcagtttgcggcagctctcactgggagctcgcatgcggaagatctccttgctgtggatgcctgggcttcaacagcaatgccaacagcttcatggcgaagctctagatgtgattattcggtga
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| Protein seq | MAAIIDSFVGLCLNELQKAITEEAILILGVKEDLMELQQRMEQIKPFLNDAEQRGIEDSACGKWLGRLKDAMYDADDIIDLARSEGSKLLADHPQGSSGKPNSCTGFSPFSCFSNIRKRREIGVKINNLNKIIESIAKDKIFLTPEYSAQSTGKSSSASKVTISSHLVEPNLVGKEVMHACSKLVNLILANKDKKAYKVVIVGTGGVGKTTLAQKIYNDITLKGNFDKQAWVCVSKEYSKASVLRQILRIMEVRHDIDESIGELQSKLTSAIKEKSFFLVLDDVWQSDVWTNLLRTPLHAAATGTIIFTTRYDSIPQELGARYIHRVDLMSVDVGWELLWKSMNITDEKQVQNLKDIGIEIVRKCGRLPLAIMVIARVLASRDQSQNEWKKILNKSSWSMDKLPSEISGALYLSYEDLPQHLKQCFKYCVVYTEDSDIYHDDITKMWIAEGFIEEQEGQLLEDTAEEYYYELVHRNLLQPDYSNFLHNVCKMHDLIRQLACHLTRDECFVGDPESLGGNILCRLRCISVVTEKDMVVIPSIGKEQVKVRTFAIASWSLRVEDTIFKRFLHLRVLDLTGSQIQSIPSYIGNLIHLRLLDLESTSVTCLPESIGSLKNLRILNLPGCGGLQTLPLATTQLHNLRCLCLRQTPINQVPKGISRLKLLNDLEGFPIGSDNGNTSTQYGWPLEELVPLLHLRRITIIKLERAVHHSTDPILLGKKSLKILSLCCTKHKNRPYLEVDVNNIEKIFELLIPPHSLEDLVIEGFFGRRYPTWLCSTYLSSLKYLNIIHCKLWVHLPPLGQLPNLRYLRIVGATSVSKIGPEFVGRLAGNPTFSEAVAFPKLEWLIIDNLPNWEEWSIVEQDSLATTEGANDGAEAKRKREAMFPRLQLFPRLEKLDIARCPKLRALPEQLAQAGSLRILQLRKAGRLKIVENLHFLSDLLLITGCGCLERVSNLPVVERLNVRRCPRLTSVDRLGSLRQLSLGARMRKISLLWMPGLQQQCQQLHGEALDVIIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.663301 | 2.629670 | 2.751413 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0332600 | SBH | 0.117646 | 0.241830 | 0.354971 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g15880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0332600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008920 | RBH | 0.093400 | 4.175136 | 1.548688 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0008970 | RBH | 0.059813 | 0.704954 | 0.834824 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0009140 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0008940 | RBH | 0.023374 | 0.096604 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008940 | SBH | 0.0 | 1.057265 | 1.056123 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0151000 | RBH | 0.0046995 | 0 | 0.008922 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0008960 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0148200 | SBH | 1.3106685 | 7.9840025 | 0.0493055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0008470 | RBH | 0.0 | 0.039904 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008660 | RBH | 0.0 | 0.992131 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0008500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0009220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008640 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008890 | RBH | 0.310708 | 1.166081 | 0.465216 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008700 | RBH | 0.0 | 0.0 | 0.0 |
