Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_08g0004950 | OGI:08011380 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr08:4477398-4480830 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acagaatcttcgtctacctgcagtcccgtcgctctctcaccaccagccatggccgcggatcccaccaccggcggcggcggcgcggcgggccggagccccgaggacgaggtggcggagtccttcttccgcgccgcgccgccgctccgcgaccgggacCGcgtcgccggggacctcgccgccttcgtcgcccgccacgccggcaagtccctccccccccccccccctcgcctcctccttccctctcctccgatctcatctccttcgatgcgtcgcgtgGGTgggtgagttgctgatctcgatcgtgtttggtggtgggtagggagcggaggaggaggaggaggaggggggaggctcgccggggtggtctgcgtcacctccggcggcacgacggtgCccctggagcagcggtgcgtgcgatacatcgacaacttcagctccggccagagaggggccgcgtccaccgagtatgcttagtaactctcaTtgctgttcttctctctgctttgtactacaactgtttggtgctaattttcagcttgctggtaaaattcaggtactttctcaaagctggctacgccgtcatcttcatctaccgccggtaagttcaaaaagaaaaaaaaaaagttcaacaattcaattgtaagttcagaggagctgaagttgttactgcatgctagtttacgatcattgtgtagatagacagtgcttgggacgtttttagggaataaagaagagacAaaaaccagtgtagatagacagtgcaagctgttttgtttacttttctttcttttttgatttgttttagttctcaatgccccatttagtggaagagttgtgagtgacatcagcgcctctttgcagtgggagcaagcaaccttactgtaggtttcttccagaggattccTttcttgatttattcgagcttggtgaagaatcagatatccaaggttggggattgatcctaaattatttataTttatgccaactgaattatctgttgtttttgcttctttttttcaTttttagatgtttgaccttaattataaacatttattgatatgaaatgaaaagactaaatgataaactctcatgtaagttacttacctcagtcccagaatctcatgccgcggttgtcaagacagcaataagaaattatcgaaaggtataaacagttctgttttaactccatgaaactagtctcatgcgctggttacaacttacaactggtcagactggtacagttgtgtgaccattggcttggtttccttgattgcaggcgattgatgaaggcctattgctgaaacttcctttcaccactatctttgagtaccttcaggttttgctcattattcctacagaaacgtgttatcatatacacgctatcataaagacagaggacttagtcagtctcacgagaaaggcctaGgggtcttccggctagcaccacaaggtgtgggctattcgacctgggttcgagcctcaccccTAtcttaataaatttcgatctgagagcccttcctctcatatccagtgtttttttttttcagtcagtctcacacatagcgatgcaagtggatctggatggacttggcccaatggcccatgctagTtcatttgcttgaattataattcaaatgcatatatacatatttgaccagaaagtgactcatcaattgagtaaaatgggccaatggccaggtgtccagtccaattacatttgtgctcacacgtccactactgctggtgtttaaaacattttataccttgtttcgttgaatatattactatatgacttagcattgcaaaagaattcaatcacgatctgtctccaatacattaaggtggggagatgactggattttgaaaatccagtcataatttagactgtcttagatatcgtatgctttaggaacttgccaattttctgttatgttctacagcaaaagattaaccttggcatactgttatactgatgaggaatctgatatatctcttctgcttgtttttccaatagttactgcaaatggtaggtacggcgatgaattgcttgggacgccaaggaatgttttaccttgctgcggcagtttctgacttttatgttccatgggaaagcatggtaggctctactcttctgatcatttcattgtagtaaaacaaacaaatagcctatatgttcattgcatttggtgtatatatcagttaatgatgctcgtaggcttctagatggtgtttgtcattggacattataggtgcctggcttttccctaaatcaggggatccttatttaagagatcacagccccctcttacttacaccatgttagagttataccatttcaaaatcttgaaactcaggaaccatgtattggtattgaaacatatgattttttttcgtaactagttatgaaaatggtagtttcgtagcatagtaatggactccttgttatcagatgtttcatgtatattggcatattgcatccaatgcactagtagttgcaggcaacatggtcattatgtacctcgcgcatgttttggcaggctaaacataaaatcgagtcagcaagtggccctttgaacatgcaactcaatcaagttccgaagatgcttttcattctgagaaaacaatggtctccttcagcattttgtgtatccttcaaggttagtttgatgtattttcacacttccatatggagctatggttgctcaagcttttttctgcattaaagaaaacctcagtgtaccttcattctgctcgtgttactctcgaaatatcttattttctagagtcgagatgactaGccccaccttactgctggcgcctaatacatgcacattacagcttgagacggacccagatatccttctgcaGaaggcagaggcagctctgagaaagtatggtatgaatgtcgtggtcgccaacgagctagcgaactacaaagatgtagttgtgatggtcacaagcaatgggaggacaaccgtgcgaaggcccagcaaggaggatgacgtcgaagaacagttaatcgatctcttggtagagatgcactctgaacacatcatgcagctcaatcaagaccatcagacgtgcacaagctgacataacaattatactgaatggagtacgagtatcagaattcttggcaactacatcatccaaagttgttacaacttacgagccacgagctgaactatgaatatcatgacttgtaaaaaagaaaacgaatagcatatgcccacaaatggtggtaaagtatgcatgtaccacattcaggtgtcaatgttacgcctggtgcttctgtaacttactacatgttaattccctgggaaagggccttgggagataggcatgatttttttttctaacttttccttttctcaaatcatctggttgtgatttttggacgttttgtgtagtcttccatgctcctgcttcaaat
More
|
||||||||||
| CDS seq | atggccgcggatcccaccaccggcggcggcggcgcggcgggccggagccccgaggacgaggtggcggagtccttcttccgcgccgcgccgccgctccgcgaccgggacCGcgtcgccggggacctcgccgccttcgtcgcccgccacgccgggagcggaggaggaggaggaggaggggggaggctcgccggggtggtctgcgtcacctccggcggcacgacggtgCccctggagcagcggtgcgtgcgatacatcgacaacttcagctccggccagagaggggccgcgtccaccgagtactttctcaaagctggctacgccgtcatcttcatctaccgccgtgggagcaagcaaccttactgtaggtttcttccagaggattccTttcttgatttattcgagcttggtgaagaatcagatatccaagtcccagaatctcatgccgcggttgtcaagacagcaataagaaattatcgaaaggcgattgatgaaggcctattgctgaaacttcctttcaccactatctttgagtaccttcagttactgcaaatggtaggtacggcgatgaattgcttgggacgccaaggaatgttttaccttgctgcggcagtttctgacttttatgttccatgggaaagcatggctaaacataaaatcgagtcagcaagtggccctttgaacatgcaactcaatcaagttccgaagatgcttttcattctgagaaaacaatggtctccttcagcattttgtgtatccttcaagcttgagacggacccagatatccttctgcaGaaggcagaggcagctctgagaaagtatggtatgaatgtcgtggtcgccaacgagctagcgaactacaaagatgtagttgtgatggtcacaagcaatgggaggacaaccgtgcgaaggcccagcaaggaggatgacgtcgaagaacagttaatcgatctcttggtagagatgcactctgaacacatcatgcagctcaatcaagaccatcagacgtgcacaagctga
More
|
||||||||||
| Protein seq | MAADPTTGGGGAAGRSPEDEVAESFFRAAPPLRDRDRVAGDLAAFVARHAGSGGGGGGGGRLAGVVCVTSGGTTVPLEQRCVRYIDNFSSGQRGAASTEYFLKAGYAVIFIYRRGSKQPYCRFLPEDSFLDLFELGEESDIQVPESHAAVVKTAIRNYRKAIDEGLLLKLPFTTIFEYLQLLQMVGTAMNCLGRQGMFYLAAAVSDFYVPWESMAKHKIESASGPLNMQLNQVPKMLFILRKQWSPSAFCVSFKLETDPDILLQKAEAALRKYGMNVVVANELANYKDVVVMVTSNGRTTVRRPSKEDDVEEQLIDLLVEMHSEHIMQLNQDHQTCTS |
||||||||||
| Function | Phosphopantothenate--cysteine ligase 2 [UniProtKB/Swiss-Prot:Q0J7N5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_08g0004950 | OsPr106_08g0004950.01 | Chr08 | 4477398 | 4480830 | + | NAM | ||
| CDS seq | atggccgcggatcccaccaccggcggcggcggcgcggcgggccggagccccgaggacgaggtggcggagtccttcttccgcgccgcgccgccgctccgcgaccgggacCGcgtcgccggggacctcgccgccttcgtcgcccgccacgccgggagcggaggaggaggaggaggaggggggaggctcgccggggtggtctgcgtcacctccggcggcacgacggtgCccctggagcagcggtgcgtgcgatacatcgacaacttcagctccggccagagaggggccgcgtccaccgagtactttctcaaagctggctacgccgtcatcttcatctaccgccgtgggagcaagcaaccttactgtaggtttcttccagaggattccTttcttgatttattcgagcttggtgaagaatcagatatccaagtcccagaatctcatgccgcggttgtcaagacagcaataagaaattatcgaaaggcgattgatgaaggcctattgctgaaacttcctttcaccactatctttgagtaccttcagttactgcaaatggtaggtacggcgatgaattgcttgggacgccaaggaatgttttaccttgctgcggcagtttctgacttttatgttccatgggaaagcatggctaaacataaaatcgagtcagcaagtggccctttgaacatgcaactcaatcaagttccgaagatgcttttcattctgagaaaacaatggtctccttcagcattttgtgtatccttcaagcttgagacggacccagatatccttctgcaGaaggcagaggcagctctgagaaagtatggtatgaatgtcgtggtcgccaacgagctagcgaactacaaagatgtagttgtgatggtcacaagcaatgggaggacaaccgtgcgaaggcccagcaaggaggatgacgtcgaagaacagttaatcgatctcttggtagagatgcactctgaacacatcatgcagctcaatcaagaccatcagacgtgcacaagctga
More
|
|||||||
| Protein seq | MAADPTTGGGGAAGRSPEDEVAESFFRAAPPLRDRDRVAGDLAAFVARHAGSGGGGGGGGRLAGVVCVTSGGTTVPLEQRCVRYIDNFSSGQRGAASTEYFLKAGYAVIFIYRRGSKQPYCRFLPEDSFLDLFELGEESDIQVPESHAAVVKTAIRNYRKAIDEGLLLKLPFTTIFEYLQLLQMVGTAMNCLGRQGMFYLAAAVSDFYVPWESMAKHKIESASGPLNMQLNQVPKMLFILRKQWSPSAFCVSFKLETDPDILLQKAEAALRKYGMNVVVANELANYKDVVVMVTSNGRTTVRRPSKEDDVEEQLIDLLVEMHSEHIMQLNQDHQTCTS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 11.202464 | 10.457520 | 13.448945 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0176100 | RBH | 0.789686 | 1.236156 | 1.854756 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07880 | RBH | 0.440332 | 0.685545 | 0.296156 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0176100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005170 | RBH | 0.611498 | 12.245998 | 1.441795 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005220 | RBH | 0.242120 | 2.470671 | 1.098103 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005210 | RBH | 1.254649 | 1.439022 | 4.786688 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005230 | RBH | 0.254589 | 0.244725 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0066900 | SBH | 1.110872 | 14.6362895 | 1.6636305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004780 | RBH | 0.486027 | 0.113757 | 0.865475 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0072600 | SBH | 1.279657 | 2.9665565 | 1.7377145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0004900 | RBH | 0.891498 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004950 | RBH | 1.301479 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004770 | RBH | 10.548416 | 31.893974 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0005050 | RBH | 0.689629 | 0.512832 | 1.364232 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004960 | RBH | 0.835766 | 0.986252 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004900 | RBH | 0.861680 | 3.282610 | 1.297075 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004860 | RBH | 4.497647 | 14.777040 | 8.203744 |
