Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_07g0025310 | OGI:07074630 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr07:27892319-27894937 | ||||||||
| Gene Symbol | Os_F0606, - | ||||||||||
| DNA seq | aagcgtttaggtttccggcgcgccgccgctgccgctcgccgtcgccgaactacggcaaggtacgccgctccccacccgctcgcctgtggttactctactcatcttctcgctttcatatactattgtcggttattttttagtatcctttctcctgcctcctccaaggagaaagtgtgcgatttccaGgggcagagcagattgtcggatcggcggcgactattggaactaagaaaataaacgttgctgagaccttcctttcggattctaagagtaagatcaatctaagtttgtggttgtacgaattcctttcggaatatttgggaggccttgggcatatcattaTtctagtcggactctcaatgctcatgtcccccacaaaagggcagccgaacctttgtcatgaacaacaaacacgagcattgggtttcttggcttcctaggcgcataaagggctcttaacttcgttgctgcatagctgcataaaagagtcaggttgtaagctttgggctttcaacatagtagcttcgctgcagaaggcaagtcagattccacatggagataaataatggacacacctttgtaagttcttggtttcaattataagtattctttagagttttaatgcttcaagccactaatttagtgtaatctaattattgtagcaagcggaggagggcgataggctcagcaatctgcctgacgatattttgttggatatcttggcgagactcaacattagtacggttgcaaagacaagcgccctgtcaacgcggtggaggcacctaccttggcagttaactaagctggatttggatgttgcagaattcctacatgccccagtgttcaatagcataacgactgtgcacatggatcaagctatgtcagctctcaccaaagcagctacgagtttgctatctgtgccacagagagatacctccatcagaaacctaggccttaaactctacatgatggacagctactcaagcaatataggatcaGtaTTAAGtcaagcaattgaagctgggatagtaaaagaattggaccttgctgttttgcacgagaagagacatatagattgcaatgatgatgatatgcttcatcaagccagagctgtgaaggtcTttgctggtgtttttcctcgtgtgattcattgcatcacaaggctctctctgtacaatgtgcgccttgatggagacattcatcatattattttcgactgctgcactcagttggactatctaagtctcgagcattgcgatgatgggagccgtgctgtatggaagataaatgcgccaaactcgaagctccggcatttggagcttgcagtgtgcttctttgggaggctcgatttagtctgcctcccaaaattcgagtatatttactgggaaatttggttcactccttatgCccccttgtcattcagatcagtcccaagccttagggaattacgtctctcatgtcctgcccaatctgacttccaaggcttcaagttaagcaaagttttacaaggtgtcccgaacttgcatactttgacaatagatttccaaggagaaaaggtaattgcataatcatttgttatggtcttcttttattattggtacaactgtaagttgcggcatgttattcagaacgaggatctagcactaaaatgctgtgatagtttcagctggctcagttcaaccacttaggtgtatttaccttcaatttaaaaatgaaaaaacctgtgaggtggtcaagtgtgcaaccacaccctcctaaattttggtttaacccctcttttgcttgtaattgcccgcaaggattttattatttaggagtaatcttgtttgtgcaatggattcatatatatttggcaatcactcacgtgcttcacttctgccttttgttttttcagttatggatgcaacctgaacaaaaacagatctgccctgcattcaacaatctaaagaagttatctattctttgcattcatgttgaatttgacctgttatggactataatcctccttgaagctgcaccatccgttgagctcctttgtattgatgtaagtttccttttttttttaatagagcgcaacaatagcatgatagtaactgcaactggactatcattatgtgcacaaattaacataaccaaatgctcatactaaatgtagacctgggaacatgtatgcttggtaaacaaagaggatgaagatggaagaaagcttgtttatggagaaacaacacatccttcatgggagatatctgagttcactggcaccagaaattggcaattgaaagaactccagttcactggctttaggccactcaagcaacaattggtctttttaaaggccatcatggagcaagctcgcaacctgcagactgttattctgaaagaggaagagccatgcgaggactgtgaggcgataggcacgcctctttcttgtataaaagattatgactttccaaagtcgaaggatgagcaagacaatgtagttgagcagctcagagagaagatttcttcggattcgcaaataattttcctgtgtttgtaacatccccttcccaaattattttcctatagttttggaaaatgaatatatcatatgtacatcccggataatttgtattactg
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| CDS seq | atggatcaagctatgtcagctctcaccaaagcagctacgagtttgctatctgtgccacagagagatacctccatcagaaacctaggccttaaactctacatgatggacagctactcaagcaatataggatcaGtaTTAAGtcaagcaattgaagctgggatagtaaaagaattggaccttgctgttttgcacgagaagagacatatagattgcaatgatgatgatatgcttcatcaagccagagctgtgaaggtcTttgctggtgtttttcctcgtgtgattcattgcatcacaaggctctctctgtacaatgtgcgccttgatggagacattcatcatattattttcgactgctgcactcagttggactatctaagtctcgagcattgcgatgatgggagccgtgctttaagcaaagttttacaaggtgtcccgaacttgcatactttgacaatagatttccaaggagaaaagttatggatgcaacctgaacaaaaacagatctgccctgcattcaacaatctaaagaagttatctattctttgcattcatgttgaatttgacctgttatggactataatcctccttgaagctgcaccatccgttgagctcctttgtattgatacctgggaacatgtatgcttggtaaacaaagaggatgaagatggaagaaagcttgtttatggagaaacaacacatccttcatgggagatatctgagttcactggcaccagaaattggcaattgaaagaactccagttcactggctttaggccactcaagcaacaattggtctttttaaaggccatcatggagcaagctcgcaacctgcagactgttattctgaaagaggaagagccatgcgaggactgtgaggcgataggcacgcctctttcttgtataaaagattatgactttccaaagtcgaaggatgagcaagacaatgtagttgagcagctcagagagaagatttcttcggattcgcaaataattttcctgtgtttgtaa
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| Protein seq | MDQAMSALTKAATSLLSVPQRDTSIRNLGLKLYMMDSYSSNIGSVLSQAIEAGIVKELDLAVLHEKRHIDCNDDDMLHQARAVKVFAGVFPRVIHCITRLSLYNVRLDGDIHHIIFDCCTQLDYLSLEHCDDGSRALSKVLQGVPNLHTLTIDFQGEKLWMQPEQKQICPAFNNLKKLSILCIHVEFDLLWTIILLEAAPSVELLCIDTWEHVCLVNKEDEDGRKLVYGETTHPSWEISEFTGTRNWQLKELQFTGFRPLKQQLVFLKAIMEQARNLQTVILKEEEPCEDCEAIGTPLSCIKDYDFPKSKDEQDNVVEQLREKISSDSQIIFLCL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0025310 | OsPr106_07g0025310.01 | Chr07 | 27892981 | 27894857 | + | NAM | ||
| CDS seq | atggatcaagctatgtcagctctcaccaaagcagctacgagtttgctatctgtgccacagagagatacctccatcagaaacctaggccttaaactctacatgatggacagctactcaagcaatataggatcaGtaTTAAGtcaagcaattgaagctgggatagtaaaagaattggaccttgctgttttgcacgagaagagacatatagattgcaatgatgatgatatgcttcatcaagccagagctgtgaaggtcTttgctggtgtttttcctcgtgtgattcattgcatcacaaggctctctctgtacaatgtgcgccttgatggagacattcatcatattattttcgactgctgcactcagttggactatctaagtctcgagcattgcgatgatgggagccgtgctttaagcaaagttttacaaggtgtcccgaacttgcatactttgacaatagatttccaaggagaaaagttatggatgcaacctgaacaaaaacagatctgccctgcattcaacaatctaaagaagttatctattctttgcattcatgttgaatttgacctgttatggactataatcctccttgaagctgcaccatccgttgagctcctttgtattgatacctgggaacatgtatgcttggtaaacaaagaggatgaagatggaagaaagcttgtttatggagaaacaacacatccttcatgggagatatctgagttcactggcaccagaaattggcaattgaaagaactccagttcactggctttaggccactcaagcaacaattggtctttttaaaggccatcatggagcaagctcgcaacctgcagactgttattctgaaagaggaagagccatgcgaggactgtgaggcgataggcacgcctctttcttgtataaaagattatgactttccaaagtcgaaggatgagcaagacaatgtagttgagcagctcagagagaagatttcttcggattcgcaaataattttcctgtgtttgtaa
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| Protein seq | MDQAMSALTKAATSLLSVPQRDTSIRNLGLKLYMMDSYSSNIGSVLSQAIEAGIVKELDLAVLHEKRHIDCNDDDMLHQARAVKVFAGVFPRVIHCITRLSLYNVRLDGDIHHIIFDCCTQLDYLSLEHCDDGSRALSKVLQGVPNLHTLTIDFQGEKLWMQPEQKQICPAFNNLKKLSILCIHVEFDLLWTIILLEAAPSVELLCIDTWEHVCLVNKEDEDGRKLVYGETTHPSWEISEFTGTRNWQLKELQFTGFRPLKQQLVFLKAIMEQARNLQTVILKEEEPCEDCEAIGTPLSCIKDYDFPKSKDEQDNVVEQLREKISSDSQIIFLCL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0025310 | OsPr106_07g0025310.02 | Chr07 | 27892319 | 27894937 | + | IsoSeq | ||
| CDS seq | gcgtttaggtttccggcgcgccgccgctgccgctcgccgtcgccgaactacggcaagtatcctttctcctgcctcctccaaggagaaagtgtgcgatttccaGgggcagagcagattgtcggatcggcggcgactattggaactaagaaaataaacgttgctgagaccttcctttcggattctaagagtaagatcaatctaagtttgtggttgtacgaattcctttcggaatatttgggaggccttgggcatatcattaTtctagtcggactctcaatgctcatgtcccccacaaaagggcagccgaacctttgtcatgaacaacaaacacgagcattgggtttcttggct
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| Protein seq | AFRFPARRRCRSPSPNYGKYPFSCLLQGESVRFPGAEQIVGSAATIGTKKINVAETFLSDSKSKINLSLWLYEFLSEYLGGLGHIIILVGLSMLMSPTKGQPNLCHEQQTRALGFLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 27892981 | 27893874 | + | OsPr106_07g0025310.02 | OsPr106_07g0025310.02,OsPr106_07g0025310.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.043706 | 1.068402 | 5.357756 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0644700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45010 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0644700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025240 | RBH | 0.000000 | 0.0 | 0.290041 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025290 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025150 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025120 | RBH | 0.041572 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025320 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0442400 | RBH | 0.646382 | 1.5231855 | 0.8574905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025780 | RBH | 0.104766 | 0.0 | 0.123183 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0454000 | RBH | 0.933223 | 0.9462035 | 2.775598 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025090 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025180 | RBH | 0.179139 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025120 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025310 | RBH | 0.0 | 0.194361 | 0.367973 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025010 | RBH | 0.0 | 0.752414 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025020 | RBH | 0.0 | 0.444938 | 1.019509 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025060 | RBH | 0.198487 | 0.0 | 2.440305 |
