Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_07g0019470 | OGI:07063050 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr07:23632592-23636423 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cttgtcaccgaggcggcgagcggagcgaagcgccggtggccggcggcgcagcgacccgcggaggagcgaggcggacgtgcggcggcgcatcgagaggagcaggtggctgcggaggcgcgaccggcatagggagccccgttggagaggggtcagcggcgcgggtgcgtgtcatccgtcggccgcgtctccatctcggatcgccggagagggaggaggggtgggggtggtacaggtgcgttctttgattcccctgcggtgagatgagctagcctgccatggattcgctgtgctgttcctacttagctcggtgatcttcgttgtaagcgtgggcaaatttgactttacaattttacattatgtgtgctgcttctagtctcgcgccgcctctaagcacattctttttccccctttctttatacttctgacccgtcgagtagaacttttttgacatcaatcgtgcttgcattctactactagaatgttagttcttgaagagagataacagattgtgcatttgttcattccatttcttttgttttttcattccatttctttttttgacaaggaggagagagacgggcacctaggagaagcttcaccggtttctatcaagtaagcttgttgtatgagtgaggttacagaacacaatgcccagcaatagcgggggtagcgcgaaggagaaagatcctgaaaatgctccggagcttgtggcactgccgttggtccggaccctgaggcctgtgcatgcagtgattgatcctgccgctgacccgagatcagcacagctgtcttggccgggccatgtagtcctcctgcctccatatgcaacatggcctcatcatgtgccgaccccgccaccagcggtgaatcctgcaaatccacaacaaaacggggtactgcgattttatagttgcctatgtgactttcttgatctaggtgttgagggatatgttcatatatcgcctccttcttattgattgtgctgtgctgcaatttgtgattggcaggatgtggcggctgctgatgttagtcctgacgttggttgttgtgatgagaagatgttgccaaaggtagatatgctgtttgatggcgaaaaagaggcatacgatttctacaatgcgtatgcagagatggtgggcttctttgtccggagatcaacactctggacaacgtcaaagaacataatcactaggagaacttttgtctgctcgagagaaggttttcgggagaagaagaggggcaccaaagaagcaaagtgcccgcggcctgaaacaagaattgggtgccctgcgagcatgaccattagacttaataccaacggcaagtaccgtttgacagagtttgtaccaaaccataaccatcaacttgcaacagcatctacaatgcgtatgctgaaggctaagaaaatcaggcttaaagcacgggctgcgagagaaaatctggttgatgatactgtgaggacgccagaatttgggagtgaagatgaggcatatgaattttacagcatgtatgctgggaaaattggtttcaatgtgagaagggcaagcatgactatgaatgctgaaaatgtcatcacaagaaggatgtttgtttgttcaaaagaaggtttccgtgagaaGaaaagaggggcaaaaagagtaaagaagcctcgcccagagacccgaactggttgtccagcgtgtatggtcattagacttacatctaatggcaaatatcatgtaacagaatttgttaccttccataatcaccagcttggtgcaacagtaccttctgatcttgtggcaacatcacaaagtacagaaactggtcaagatgatggactggatttggttgatggttcagctgatgctaatatccacaggcaaaatcttataattggaaatatcatggcaacatctctagaaggtagaagtaacaaaagattcaagtgtacaaaggttcctcactatggtgatgtaggtgctactctagagtacctgcaaaagatgcaacatgataacccttcattcttctttgcagtaaaatctgatgatgatgggaacttgacaaactttctatggtcagattcaaagtctatcatggattttgtccactttggtgatgtggtatgtcttgattcaacgtatgcattgcagggctatggtaggccacttgctttatttacgggtgtgaatcatcacaagcaaactgttatctttgctgctgcattgctttatgacgaaagtgtggaggctttcagatggttgtttgatacttttaagatggcaatgaatggaactcagcccaaaacattgttaactgatagatctgatgcaataagtgaaggtgttgcagcaagttggcctgcgacagcccatcgttattgtgtctggcaaatttaccaaaacgctcttcagcagttgagtcaagcatttcatgggtcaaaaaccttagattactgcttccagaaatgcctatttgactgtgaagatgagcctgagtttttgacagcatggagagaaatgttggaaaagtatgacctagaagataatcaatggctagcagatttgttctctcttaaggagaaatgggcactaccatatggccgcgaggcattttgtgctgatatgaaaagtgtccagcagaaggagagcttgggcactgagcttaagaaacacttatccctagaatttgaccttttgagtttcttcaagcagtttgaaagagtattgtgtgaccgccgatcaacagaattgcaggctgatgtggatgctagtcagagtacaaagaagccaccacctatgcgagtgttaaggcaagcttccaatatatatacacctgctgcctttaaaatgttcgagagggagtttgagttatacatggattgcatgttatacaactgtggtgagatgggcacaatttctgagtatagggtagtcattgaggacaatccaaaagatcattttgttaaatttgattcgcttaattccatggtaaactgtagctgtaaagggtttgaattcgtaggcattccatgccgccatatgctaaaggtacttgacaccaggaatatcaaggaccttcctcctcaatacttcttgaaaaggtggagaaaggatgctaaatcaggatctccaaactgtagttattcgttcccacttgatggtgatcctcagttggttcaaacaaaacgttataacttgctgtgtcggatgttcagcatagcagcagctagggctgcaacctctatagaaacttttgcatatatggaaaaccaatcaagcatatttatggaccaagtagaacaagctcttcaaacaaggcccccagacatcgctgccatgattggggctcattgtgatcaaacacaaaatccaattgacaatatcgtcgcaggaggtctacacagccatactaatttcatcaatggccctgctgatggtacttattatattattcttttaccattaaaaactatattgctggcttgctgccatagatcttattaatgatcttatttgcatgcaggttccctaacctttccatttacattgggtgctggtgtgttggattaccgctagatagtgactaatttcttacaagtactagccacaaggagctgcgaattctgtacagtgatcttttcgtggaaatgcattttatatatcaccagaaaattccaggttatgtccctctgctgacccacttcctcatccaggtgattacatggtaatattgtgcatcttgctggctggcaatttgacaatgcttacacattataccgtagagctgagaatagtgatggctagcccatccattgtacatgtaattttccatcggtgtatttactgaa
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| CDS seq | atgcccagcaatagcgggggtagcgcgaaggagaaagatcctgaaaatgctccggagcttgtggcactgccgttggtccggaccctgaggcctgtgcatgcagtgattgatcctgccgctgacccgagatcagcacagctgtcttggccgggccatgtagtcctcctgcctccatatgcaacatggcctcatcatgtgccgaccccgccaccagcggtgaatcctgcaaatccacaacaaaacggggatgtggcggctgctgatgttagtcctgacgttggttgttgtgatgagaagatgttgccaaaggtagatatgctgtttgatggcgaaaaagaggcatacgatttctacaatgcgtatgcagagatggtgggcttctttgtccggagatcaacactctggacaacgtcaaagaacataatcactaggagaacttttgtctgctcgagagaaggttttcgggagaagaagaggggcaccaaagaagcaaagtgcccgcggcctgaaacaagaattgggtgccctgcgagcatgaccattagacttaataccaacggcaagtaccgtttgacagagtttgtaccaaaccataaccatcaacttgcaacagcatctacaatgcgtatgctgaaggctaagaaaatcaggcttaaagcacgggctgcgagagaaaatctggttgatgatactgtgaggacgccagaatttgggagtgaagatgaggcatatgaattttacagcatgtatgctgggaaaattggtttcaatgtgagaagggcaagcatgactatgaatgctgaaaatgtcatcacaagaaggatgtttgtttgttcaaaagaaggtttccgtgagaaGaaaagaggggcaaaaagagtaaagaagcctcgcccagagacccgaactggttgtccagcgtgtatggtcattagacttacatctaatggcaaatatcatgtaacagaatttgttaccttccataatcaccagcttggtgcaacagtaccttctgatcttgtggcaacatcacaaagtacagaaactggtcaagatgatggactggatttggttgatggttccctaacctttccatttacattgggtgctggtgtgttggattaccgctag
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| Protein seq | MPSNSGGSAKEKDPENAPELVALPLVRTLRPVHAVIDPAADPRSAQLSWPGHVVLLPPYATWPHHVPTPPPAVNPANPQQNGDVAAADVSPDVGCCDEKMLPKVDMLFDGEKEAYDFYNAYAEMVGFFVRRSTLWTTSKNIITRRTFVCSREGFREKKRGTKEAKCPRPETRIGCPASMTIRLNTNGKYRLTEFVPNHNHQLATASTMRMLKAKKIRLKARAARENLVDDTVRTPEFGSEDEAYEFYSMYAGKIGFNVRRASMTMNAENVITRRMFVCSKEGFREKKRGAKRVKKPRPETRTGCPACMVIRLTSNGKYHVTEFVTFHNHQLGATVPSDLVATSQSTETGQDDGLDLVDGSLTFPFTLGAGVLDYR |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0019470 | OsPr106_07g0019470.01 | Chr07 | 23632592 | 23636423 | + | NAM | ||
| CDS seq | atgcccagcaatagcgggggtagcgcgaaggagaaagatcctgaaaatgctccggagcttgtggcactgccgttggtccggaccctgaggcctgtgcatgcagtgattgatcctgccgctgacccgagatcagcacagctgtcttggccgggccatgtagtcctcctgcctccatatgcaacatggcctcatcatgtgccgaccccgccaccagcggtgaatcctgcaaatccacaacaaaacggggatgtggcggctgctgatgttagtcctgacgttggttgttgtgatgagaagatgttgccaaaggtagatatgctgtttgatggcgaaaaagaggcatacgatttctacaatgcgtatgcagagatggtgggcttctttgtccggagatcaacactctggacaacgtcaaagaacataatcactaggagaacttttgtctgctcgagagaaggttttcgggagaagaagaggggcaccaaagaagcaaagtgcccgcggcctgaaacaagaattgggtgccctgcgagcatgaccattagacttaataccaacggcaagtaccgtttgacagagtttgtaccaaaccataaccatcaacttgcaacagcatctacaatgcgtatgctgaaggctaagaaaatcaggcttaaagcacgggctgcgagagaaaatctggttgatgatactgtgaggacgccagaatttgggagtgaagatgaggcatatgaattttacagcatgtatgctgggaaaattggtttcaatgtgagaagggcaagcatgactatgaatgctgaaaatgtcatcacaagaaggatgtttgtttgttcaaaagaaggtttccgtgagaaGaaaagaggggcaaaaagagtaaagaagcctcgcccagagacccgaactggttgtccagcgtgtatggtcattagacttacatctaatggcaaatatcatgtaacagaatttgttaccttccataatcaccagcttggtgcaacagtaccttctgatcttgtggcaacatcacaaagtacagaaactggtcaagatgatggactggatttggttgatggttccctaacctttccatttacattgggtgctggtgtgttggattaccgctag
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| Protein seq | MPSNSGGSAKEKDPENAPELVALPLVRTLRPVHAVIDPAADPRSAQLSWPGHVVLLPPYATWPHHVPTPPPAVNPANPQQNGDVAAADVSPDVGCCDEKMLPKVDMLFDGEKEAYDFYNAYAEMVGFFVRRSTLWTTSKNIITRRTFVCSREGFREKKRGTKEAKCPRPETRIGCPASMTIRLNTNGKYRLTEFVPNHNHQLATASTMRMLKAKKIRLKARAARENLVDDTVRTPEFGSEDEAYEFYSMYAGKIGFNVRRASMTMNAENVITRRMFVCSKEGFREKKRGAKRVKKPRPETRTGCPACMVIRLTSNGKYHVTEFVTFHNHQLGATVPSDLVATSQSTETGQDDGLDLVDGSLTFPFTLGAGVLDYR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 11.189929 | 12.088072 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0563600 | RBH | 0.829069 | 1.224779 | 2.229650 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g37630 | RBH | 0.535671 | 0.799105 | 0.549388 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0563600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0019640 | RBH | 0.369533 | 2.753742 | 2.789127 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0019570 | RBH | 0.200832 | 0.560401 | 1.104162 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0019540 | RBH | 1.136249 | 4.652813 | 4.869610 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0019400 | RBH | 0.124505 | 0.026173 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0367900 | RBH | 1.95091 | 9.834036 | 7.003006 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0019940 | RBH | 0.290651 | 0.313361 | 0.774371 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0380100 | RBH | 2.2899065 | 8.4158855 | 9.331242 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0019260 | RBH | 0.068821 | 0.169543 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0019380 | RBH | 0.671473 | 4.165481 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0019280 | RBH | 1.263733 | 2.855315 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0019490 | RBH | 0.424848 | 0.817231 | 0.580757 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0019300 | RBH | 0.224247 | 4.397704 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G019200 | RBH | 0.080278 | 1.593958 | 1.770392 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0019280 | RBH | 1.307661 | 6.386023 | 3.443288 |
