Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_06g0026280 | OGI:06079010 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr06:29218354-29222434 | ||||||||
| Gene Symbol | RLCK213, OsRLCK213 | ||||||||||
| DNA seq | tgtatgtgactcagcaatgtgttcaggctcagtgaatggggatgatgcaaattctacataaagatcatgcaagcacaaaaaatgaagataatatcgtctacgctacggttttcctctacacaactttacactttcagaaagagacccatcagtcgcggtccgatatggcggtgaccgtgatggaggtgcgcgtcgtctcctgagacgacgagggagttgagcgcgccatgatggaggtcaacagtgaggaggaggatgtggccttgctcctgagcttgaggtccctgaaatccctgattacatcaggcttgctgatcttctctttgtcgacctccatctcgcctgtcagcatgctgatgaccattgacatggtgggtcgacgtttcgagatgtcctgggtgcacaagagaccgactttcaagaatctgcaggcttcgtcgacatccacgtcatcgaccatagagctgtctatggccttctccaaacacccctgatcataacatttccatgtctgcaaagggaagaccatgtggtcatcaacatttgggtaacatacgtaccgttggatgacaaaacccaaagttatagcaagatttgtccctgaataacacatgggaatcatgacatttgtggtactgtgatgcatacaatggtagctaagcatggaagacttgccctagagtgagctaatttagaactcttaacatcatcattgaactcttaaaataaaaattaagttgcagtaacaagccaacagctgtacaacatttagcctcaaactgaaaagttcggtacatcatatcttgtccaagaagcgagatgcttgtatttcaaatagaaaaaagcataccttctcaagaaggatctggtcttcgtagggcaattttgtgtcagtgttgcatcttccactaactatttccacaagaagaacaccaaagctgtaaacatctgacttgcgtgtcacttgtcctcggatggcatattcaggagccaagtaacctctgaaagcaaaaccacaatataaagaaaggaagagaagggtatagcagggtgtacatatagttcttaagttatcacagactagtttatttttttactccatttcatttgcactctttattttgatagacagcaggtttcaagacatatggagagcaaaatccgatgaccatagtgagtaatagtatactctcttatccagtaagtttgatggactaggactatagatgctagcatccaaatcactacctacaaataactaccaaaccagatatatgctattacttacagtgttcctgcgactcttgtactaacatgtgatgcatctgaaggcagaagcttcgctaaaccaaaatcagaaatttttggcgtgaggtccttatcaagaagtatattgctcgccttgatgtcacggtgaacaatgtgaggccggacaccatcatggaggaatgctagtcccttggcaacaccgatgcatatatttactcgagccctccagttgaactgtatgttactttgcctagaaccttaaaatgtagcaagcagaaggttttagagcatatgcatattttcccaaggagaaaagaatacagaggattcagtaaagacaaactacctagaagggtatgtgcaaggctattgttttcaagataattgtacacgaggattctgtgcctcccttccacacaacagccatgcagtttgacaagattctcatgtgaaatgtcagagattgccataagttcattaaggaactccttcacaccttgtctagattgtaacgacagcaactttacagcaacatctgttccatccttgagagttccctgaaataataagctggcaaatgtcaaacacatgtaatatactctagtacagtatgcaatggtaaatgtataaccttgtatacaggtccaaaacctccctcaccaatcttattggattggtcaaaattcagtgttgccttagccagctccttatagctgtatcttgttatgttctcagcaccagagaagactgtggaagtaaagttaaatgttacagagagatgctggctgacgaaatgttcaggaaggacatatcataatccagaatttcagattgtgaaatcgtacaaaaattttggtgtaaaattggtaaccttcattatatggatcactttgttgctgcccggtccttgacctcttgaaaaagagagaaaaacaactcatcactgagatgtttcaagctatggaaaacacaactgtgttgtgcctggcttaattgagatgttgttcgatgtatgcacacagagatcatagatgttcagcaacagccattgtatcctgacatagaagaatataaatagatgtcagtgctgcctataaaaagtaaagatacaaacagcatgctaggctgccggtagcatgtcctctcaaacattagctcaatgtatacattagagtcaaacagcaaacagaatggcaggaactgcaactaagagaataaccaatgtaacttggtaatcatgaaaaatgaaacaacaacttcatgttactaaaaacaatacatagcattgacacagaacgcatcacagtgcaaaagaaaataagtgacatgtaagcgaaggtgaagtggttatgggaattttacattttgtttgataagaaccaggcaactaggaggccttaagaaaaattcttggattaaccctacagaaatttctcaaaaagttatcttgaattcttgattagcagatgatcacaaaaaaaatcttcttgttatgtgtattacaatgacaggtttgcacagttacaaagaaaaaaactaaagtttcaagtatagtattttcgaaagtacccaagtcccattggcacacaaactacattggacattgcttagcttaaagttcaaacatgggcagcaaagtcaataatatagaaagcagtttcagctccaccaatccaacacatgtggagttttaactgttgcaaacacagaaatatacggatgcagttaaaatgcgctagcttagtaattatcattgattagagatattgcaattcaatgcgcaataccaatttaggtgaactttcaagaacggaagtcgtccaggaccactacactactacagcattttccatacatcaaatggtctcctagtggggctatacacctttcttgtcatcttggtgtaggcatcaacatcatgaccattcctacatggataagcaccgaacaaacctaacgaaaaataacagtacaggtttttttcatgaaagaacaagaagagaagacaccctacccaaactggatcaatcaataacaaaagggtatcttccgggaccggaggcacatcatttgctttcatcgtgatgcagaacaagggattgtaacccatgccccatgcccccatggaagtggcactgaacagtcacatgacagaatatctatgctggtatctagtacggagtgattgattactgcaagtaagcaacgtatgattgggttcaacttgcacagatacaatcatacaaacactattcaagtccaactcgccaattatatgtgctaatcgcattacttttcttccccaactccctaaatcgtattgcaagctatcaaaagtttcatcaattatgatactgatgatgaacagaagtacagaacccccccccccccccaagaataaattctgctaaattaaaatctcatcactaaagttcacgaatttttgaactcactcctatttgatcattaatactgaacacctgaaccgtctcccttgtccaagaaaaaggaaaaaaactaaagatcgaatatttttcctactacaaaaatccacactgaacagataggctcacctcgatccaagcggcgaaaccgacgatctccagtcgaaaccggcaagcgagaaagatcgaagaacccgacggcttccgcctccggcgccagtcgagacccggccggcccacgccgcgcgcggcagaggaaaatctctgctccggcagattgaaaaatggcaggtttttcttctcgccccgaagcgaaaaaacaaaacgaagagagatagaaaggaaagtgagggaaaggaggagagagt
More
|
||||||||||
| CDS seq | atgagttgtttttctctctttttcaagaggtcaaggaccgggcagcaacaaagtgatccatataatgaagtcttctctggtgctgagaacataacaagatacagctataaggagctggctaaggcaacactgaattttgaccaatccaataagattggtgagggaggttttggacctgtatacaagggaactctcaaggatggaacagatgttgctgtaaagttgctgtcgttacaatctagacaaggtgtgaaggagttccttaatgaacttatggcaatctctgacatttcacatgagaatcttgtcaaactgcatggctgttgtgtggaagggaggcacagaatcctcgtgtacaattatcttgaaaacaatagccttgcacatacccttctaggttctaggcaaagtaacatacagttcaactggagggctcgagtaaatatatgcatcggtgttgccaagggactagcattcctccatgatggtgtccggcctcacattgttcaccgtgacatcaaggcgagcaatatacttcttgataaggacctcacgccaaaaatttctgattttggtttagcgaagcttctgccttcagatgcatcacatgttagtacaagagtcgcaggaacactaggttacttggctcctgaatatgccatccgaggacaagtgacacgcaagtcagatgtttacagctttggtgttcttcttgtggaaatagttagtggaagatgcaacactgacacaaaattgccctacgaagaccagatccttcttgagaagacatggaaatgttatgatcaggggtgtttggagaaggccatagacagctctatggtcgatgacgtggatgtcgacgaagcctgcagattcttgaaagtcggtctcttgtgcacccaggacatctcgaaacgtcgacccaccatgtcaatggtcatcagcatgctgacaggcgagatggaggtcgacaaagagaagatcagcaagcctgatgtaatcagggatttcagggacctcaagctcaggagcaaggccacatcctcctcctcactgttgacctccatcatggcgcgctcaactccctcgtcgtctcaggagacgacgcgcacctccatcacggtcaccgccatatcggaccgcgactga
More
|
||||||||||
| Protein seq | MSCFSLFFKRSRTGQQQSDPYNEVFSGAENITRYSYKELAKATLNFDQSNKIGEGGFGPVYKGTLKDGTDVAVKLLSLQSRQGVKEFLNELMAISDISHENLVKLHGCCVEGRHRILVYNYLENNSLAHTLLGSRQSNIQFNWRARVNICIGVAKGLAFLHDGVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLLPSDASHVSTRVAGTLGYLAPEYAIRGQVTRKSDVYSFGVLLVEIVSGRCNTDTKLPYEDQILLEKTWKCYDQGCLEKAIDSSMVDDVDVDEACRFLKVGLLCTQDISKRRPTMSMVISMLTGEMEVDKEKISKPDVIRDFRDLKLRSKATSSSSLLTSIMARSTPSSSQETTRTSITVTAISDRD |
||||||||||
| Function | Cold-responsive protein kinase 1 [UniProtKB/Swiss-Prot:Q93YN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0026280 | OsPr106_06g0026280.01 | Chr06 | 29218354 | 29222434 | - | NAM | ||
| CDS seq | atgagttgtttttctctctttttcaagaggtcaaggaccgggcagcaacaaagtgatccatataatgaagtcttctctggtgctgagaacataacaagatacagctataaggagctggctaaggcaacactgaattttgaccaatccaataagattggtgagggaggttttggacctgtatacaagggaactctcaaggatggaacagatgttgctgtaaagttgctgtcgttacaatctagacaaggtgtgaaggagttccttaatgaacttatggcaatctctgacatttcacatgagaatcttgtcaaactgcatggctgttgtgtggaagggaggcacagaatcctcgtgtacaattatcttgaaaacaatagccttgcacatacccttctaggttctaggcaaagtaacatacagttcaactggagggctcgagtaaatatatgcatcggtgttgccaagggactagcattcctccatgatggtgtccggcctcacattgttcaccgtgacatcaaggcgagcaatatacttcttgataaggacctcacgccaaaaatttctgattttggtttagcgaagcttctgccttcagatgcatcacatgttagtacaagagtcgcaggaacactaggttacttggctcctgaatatgccatccgaggacaagtgacacgcaagtcagatgtttacagctttggtgttcttcttgtggaaatagttagtggaagatgcaacactgacacaaaattgccctacgaagaccagatccttcttgagaagacatggaaatgttatgatcaggggtgtttggagaaggccatagacagctctatggtcgatgacgtggatgtcgacgaagcctgcagattcttgaaagtcggtctcttgtgcacccaggacatctcgaaacgtcgacccaccatgtcaatggtcatcagcatgctgacaggcgagatggaggtcgacaaagagaagatcagcaagcctgatgtaatcagggatttcagggacctcaagctcaggagcaaggccacatcctcctcctcactgttgacctccatcatggcgcgctcaactccctcgtcgtctcaggagacgacgcgcacctccatcacggtcaccgccatatcggaccgcgactga
More
|
|||||||
| Protein seq | MSCFSLFFKRSRTGQQQSDPYNEVFSGAENITRYSYKELAKATLNFDQSNKIGEGGFGPVYKGTLKDGTDVAVKLLSLQSRQGVKEFLNELMAISDISHENLVKLHGCCVEGRHRILVYNYLENNSLAHTLLGSRQSNIQFNWRARVNICIGVAKGLAFLHDGVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLLPSDASHVSTRVAGTLGYLAPEYAIRGQVTRKSDVYSFGVLLVEIVSGRCNTDTKLPYEDQILLEKTWKCYDQGCLEKAIDSSMVDDVDVDEACRFLKVGLLCTQDISKRRPTMSMVISMLTGEMEVDKEKISKPDVIRDFRDLKLRSKATSSSSLLTSIMARSTPSSSQETTRTSITVTAISDRD
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.450159 | 4.370899 | 10.012398 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0676600 | RBH | 0.325954 | 0.516088 | 1.610414 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46330 | RBH | 0.220427 | 0.696335 | 0.423355 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0676600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026190 | RBH | 0.000000 | 8.279933 | 0.689018 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026020 | RBH | 0.069478 | 2.537969 | 1.267828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0026200 | RBH | 0.808627 | 12.186629 | 3.403110 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025830 | RBH | 0.0 | 0.512224 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004910 | RBH | 1.913120 | 11.567667 | 2.482682 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0440500 | RBH | 3.939943 | 20.141385 | 8.4072495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025690 | RBH | 0.037292 | 1.677964 | 0.214640 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0422500 | RBH | 3.3264115 | 19.8145335 | 8.866127 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026130 | RBH | 0.052282 | 0.147040 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026230 | RBH | 0.000000 | 4.492454 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0025850 | RBH | 0.871121 | 15.371240 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026500 | RBH | 0.111644 | 0.958645 | 0.519253 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026080 | RBH | 0.089076 | 3.347706 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G025990 | RBH | 0.169771 | 2.617032 | 0.598845 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026030 | RBH | 0.000000 | 15.305388 | 5.931863 |
