Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_06g0020870 | OGI:06065000 | 3/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr06:24078589-24079792 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcatggatagaaacctaacaaatcattcttgcctcctcgcttgccggtgaagatcgaatgggcgtttacaatcaagaaattggtggaggccagtgtgtatatgttccacttccacagatggtagttaaggtaaatccatgtttagagcttggagcggtcaccttgcagagcaactagaagccagattaagaagaattaatcggttacacatgaacggaaacagacaattgaacatatattgtggcacatgcaaacgtgcgttacctcgacaaggagaaggagaagggttcccaggatcaggagttgggtcatttgtaggcgttggatcaaccgacgaccgtgcacctggcagccacgcaagagcacgtgagtgaaaatcaataaactgttgaacacacattgtacacactggcacaggcgcacgtaggcaggcatggcattacctcgtcgaggatgaggaggaggcgttttgtgttgttcacttgagtcaacagggtcatgtgtaggcgtgggttcaatcgatgacagtgtacctggcaggtacacaagagcacgcacaggtgactacggctgtgtttagttcagtgcaaagtttagatttagttgaaattaaagatgatgtgactgaaaagttgtgtgtgtataacaggttgatgtgatggaaaaggactaaagtttagatcaaactttggatctaaacacagcctgagtgaaaaataaacagttgaacgcacactggcacaggcgcacgcgcgtaggcaggcatggcattacctagtcgaggaggaggaggaggaggaggcggcgttctgtgattttcatttgagtcaccagcgccatgtcggcttccgttgttatccagcggcgcaactggcagcaaaaagcagaaacaatcatgcagatcggtacgtattagcagcataaatcgcagtgacgacgcttgacagtactggcattgcacagcacaggcaagctagtaattaacattacctgaaggagacttggactcgctgctgggtgataggggacagaccacggcacggatcgtcagttctatactgaaccctggagcagctggaggaggaggaggagcagcagcagggtctgggtcacccactgctgtcggaggcttcatgggcggagggtcgccgtcgccgccaacagcggccggcggccgagtggtgctaactacgacgggtgccat
More
|
||||||||||
| CDS seq | atggcacccgtcgtagttagcaccactcggccgccggccgctgttggcggcgacggcgaccctccgcccatgaagcctccgacagcagtgggtgacccagaccctgctgctgctcctcctcctcctccagctgctccagggttcagtatagaactgacgatccgtgccgtggtctgtcccctatcacccagcagcgagtccaagtctccttcaggtgcacggtcgtcggttgatccaacgcctacaaatgacccaactcctgatcctgggaacccttctccttctccttgtcgagttgctctgcaaggtgaccgctccaagctctaa |
||||||||||
| Protein seq | MAPVVVSTTRPPAAVGGDGDPPPMKPPTAVGDPDPAAAPPPPPAAPGFSIELTIRAVVCPLSPSSESKSPSGARSSVDPTPTNDPTPDPGNPSPSPCRVALQGDRSKL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0020870 | OsPr106_06g0020870.01 | Chr06 | 24078589 | 24079792 | - | NAM | ||
| CDS seq | atggcacccgtcgtagttagcaccactcggccgccggccgctgttggcggcgacggcgaccctccgcccatgaagcctccgacagcagtgggtgacccagaccctgctgctgctcctcctcctcctccagctgctccagggttcagtatagaactgacgatccgtgccgtggtctgtcccctatcacccagcagcgagtccaagtctccttcaggtgcacggtcgtcggttgatccaacgcctacaaatgacccaactcctgatcctgggaacccttctccttctccttgtcgagttgctctgcaaggtgaccgctccaagctctaa
More
|
|||||||
| Protein seq | MAPVVVSTTRPPAAVGGDGDPPPMKPPTAVGDPDPAAAPPPPPAAPGFSIELTIRAVVCPLSPSSESKSPSGARSSVDPTPTNDPTPDPGNPSPSPCRVALQGDRSKL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 19.713396 | 1.723184 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0364400 | RBH | 0.017843 | 0.05517 | 0.001687 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0340300 | RBH | 0.1600265 | 9.921134 | 0.065872 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
