Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_06g0008450 | OGI:04046690 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr06:6439570-6439916 | ||||||||
| Gene Symbol | RPL2, rpl2, rpl8, RPL8, OsRPL2, OsRPL8 | ||||||||||
| DNA seq | atgaaggaggagaaagaaacaatagtaacgtggtcccgggcatctagcattctacccgcaatggttggccatacaatcgcgattcataatggaaaggaacatttacctatttatataacagatcgtatactagtattctcttaggacttggaagtgtagttgtctttccttagccgcacaggcagtaaaagtaaagagctagaggtcgggtccttcctctcctcattcaagccaggcgggaaggctgtttacatacgtataatccgcttgtcaattctttatatcagactcactcgtcaaagcaattgaacttcattgagggaacaggggctttctttaggagataa |
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| CDS seq | atgaaggaggagaaagaaacaatagtaacgtggtcccgggcatctagcattctacccgcaatggttggccatacaatcgcgattcataatggaaaggaacatttacctatttatataacagatcgtatactaactcactcgtcaaagcaattgaacttcattgagggaacaggggctttctttaggagataa |
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| Protein seq | MKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHLPIYITDRILTHSSKQLNFIEGTGAFFRR |
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| Function | 30S ribosomal protein S19, chloroplastic [UniProtKB/Swiss-Prot:Q3V4Z3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0008450 | OsPr106_06g0008450.01 | Chr06 | 6439570 | 6439916 | + | NAM | ||
| CDS seq | atgaaggaggagaaagaaacaatagtaacgtggtcccgggcatctagcattctacccgcaatggttggccatacaatcgcgattcataatggaaaggaacatttacctatttatataacagatcgtatactaactcactcgtcaaagcaattgaacttcattgagggaacaggggctttctttaggagataa |
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| Protein seq | MKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHLPIYITDRILTHSSKQLNFIEGTGAFFRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 21.132067 | 91.066559 | 92.439377 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015580 | RBH | 21.566257 | 66.017838 | 85.491173 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020120 | RBH | 23.847536 | 4.055459 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020380 | RBH | 0.000000 | 0.000000 | 6.483143 |
