Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_06g0000930 | OGI:06001820 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr06:647694-650002 | ||||||||
| Gene Symbol | OsFbox288, Os_F0622 | ||||||||||
| DNA seq | gccgccgccggttgcccggtctcctcgccGgccggcggatccggtgaagctacggattagtgagtggtaggagcagcagcggccatggacgggagccgccaggagatgccgccgccaacggagctgagcgctctcggccacaggtaatttggttccgttcttgcttcgattttgcttagttttgtagatttctagttgattataggtatatagttccaagaagtttatggtacctgacattcttgtatggtagcatttgacactgaatcactgatggctgaagctgcgttggctgccaaaggaaccaaccagatctattaataaattattaatcaaatgcactatcttttttccagataaatagggtgtattgccgcatattcatactgtcaaaataaacattttcattaattttgggagggtggaatacgaagtaccattttgtcttattttgaagggaagggaggaaaaaaacaaaaataggtttggcacaatataaacagattattacaattgtggtattgttcaagatatcaaagctgtaggtggttctggcgtatattgttttggttggcatctaggacgttgatgcacatcttattctgggaatcgttagttcgttacagacttacagttcaatgaaatggtcagttttatttgcctcaatgtgtcataactcataagggtcactgtaatgactcaagaagctgtaggtgaagttaccgctttatattgcttcactgaaacaacacagttggatcaatatcactccactctatctctcaatctttactagtaggaagtagtaattttatcttcgaatgttttctctgctccagtaatctctgaatttttctttgtttgacagggaagttgctgctgcagaaaggccctttaagaaaacctgccactcatcagtgcctatcttctaccttgtgtgaaccccatgtttggccaggtctcctggaaagcctccttcaccaaatcattgctttgcttagctcattccaggactttcttgcttttagtgccacctgccactcttggcgagctgcgctatcttcctttccatccgtatatactttcaacttcccacctctctgcctcaaactaaatacacctaatatccgttcccttcgcgtccttttgaaggacaatcttttatcttactgcaaatggcagcttgatgatccatccaagagaaacatatcccttcgttgttcagctccgccagatgctccaaatcgcatgcgctatttgggctgctcatatggatatctcatcttctcctatcatgagaagaactgcctctttgttgatgcttacactggcactaagctgaagtctcccaaactcaacttcatgggcgacagggatatctactacggcatccttacggctccacttaattcacccaactcacatctgatactttgttcgaggtcttccatattctattggcaggttggaacaaactcttggacaaagcacgtttatggcggtgagcacaTtcttcagattgtgctcttcaaaggtgagatttttgcgatggatgttcttggcaggcttcacaccatgcaatttgcacctgagctcagcatacaggaagtagcggttctgcgacgagaagaaatggttacaggcccacgttctgggccatggctggtggcctgtggtgaaatgcttctcatggttgatttgtcaacagaccgcgaccaattgcctcgcacctttcaagtctttcgtcttgagttttctgctgaaacagttgagtgtgtgaagatggaaaggttggaaaatcaggctctctttgtcaaccttgaTgggaGggaccctacattctcttgcacgagccctgAaagatggggcggaaagagtaactggatttatgttgcgaaaccatctggagattctggtgaaccttggaccgcggtcgagctcggtcagccagttcctagtagaatagaccgcgtcccagactttcaagtagacaacatgtgggtggtacccagTttgatttatgatgtcaaccaatgatgttctcatcaagttttagccagcgttgcacaagccatatccgtacttgctagtgtgatttaatggtttcttgacctgtggcatatgtatggattcttgtaagagtacactgaagttgtatctgtagtatgagAaatgcaggttcttgcatgtactgtgcagggttggtctatgttctgtgaccatgtgaatgctgccttaatattAtattatcgttggttaatggttatgttgtgtgacgccggagggatgtcgctgagagttgtttcatg
More
|
||||||||||
| CDS seq | atggacgggagccgccaggagatgccgccgccaacggagctgagcgctctcggccacagggtcactgtaatgactcaagaagctgtagggaagttgctgctgcagaaaggccctttaagaaaacctgccactcatcagtgcctatcttctaccttgtgtgaaccccatgtttggccaggtctcctggaaagcctccttcaccaaatcattgctttgcttagctcattccaggactttcttgcttttagtgccacctgccactcttggcgagctgcgctatcttcctttccatccgtatatactttcaacttcccacctctctgcctcaaactaaatacacctaatatccgttcccttcgcgtccttttgaaggacaatcttttatcttactgcaaatggcagcttgatgatccatccaagagaaacatatcccttcgttgttcagctccgccagatgctccaaatcgcatgcgctatttgggctgctcatatggatatctcatcttctcctatcatgagaagaactgcctctttgttgatgcttacactggcactaagctgaagtctcccaaactcaacttcatgggcgacagggatatctactacggcatccttacggctccacttaattcacccaactcacatctgatactttgttcgaggtcttccatattctattggcaggttggaacaaactcttggacaaagcacgtttatggcggtgagcacaTtcttcagattgtgctcttcaaaggtgagatttttgcgatggatgttcttggcaggcttcacaccatgcaatttgcacctgagctcagcatacaggaagtagcggttctgcgacgagaagaaatggttacaggcccacgttctgggccatggctggtggcctgtggtgaaatgcttctcatggttgatttgtcaacagaccgcgaccaattgcctcgcacctttcaagtctttcgtcttgagttttctgctgaaacagttgagtgtgtgaagatggaaaggttggaaaatcaggctctctttgtcaaccttgaTgggaGggaccctacattctcttgcacgagccctgAaagatggggcggaaagagtaactggatttatgttgcgaaaccatctggagattctggtgaaccttggaccgcggtcgagctcggtcagccagttcctagtagaatagaccgcgtcccagactttcaagtagacaacatgtgggtggtacccagTttgatttatgatgtcaaccaatga
More
|
||||||||||
| Protein seq | MDGSRQEMPPPTELSALGHRVTVMTQEAVGKLLLQKGPLRKPATHQCLSSTLCEPHVWPGLLESLLHQIIALLSSFQDFLAFSATCHSWRAALSSFPSVYTFNFPPLCLKLNTPNIRSLRVLLKDNLLSYCKWQLDDPSKRNISLRCSAPPDAPNRMRYLGCSYGYLIFSYHEKNCLFVDAYTGTKLKSPKLNFMGDRDIYYGILTAPLNSPNSHLILCSRSSIFYWQVGTNSWTKHVYGGEHILQIVLFKGEIFAMDVLGRLHTMQFAPELSIQEVAVLRREEMVTGPRSGPWLVACGEMLLMVDLSTDRDQLPRTFQVFRLEFSAETVECVKMERLENQALFVNLDGRDPTFSCTSPERWGGKSNWIYVAKPSGDSGEPWTAVELGQPVPSRIDRVPDFQVDNMWVVPSLIYDVNQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0000930 | OsPr106_06g0000930.01 | Chr06 | 647778 | 650002 | + | NAM | ||
| CDS seq | atggacgggagccgccaggagatgccgccgccaacggagctgagcgctctcggccacagggtcactgtaatgactcaagaagctgtagggaagttgctgctgcagaaaggccctttaagaaaacctgccactcatcagtgcctatcttctaccttgtgtgaaccccatgtttggccaggtctcctggaaagcctccttcaccaaatcattgctttgcttagctcattccaggactttcttgcttttagtgccacctgccactcttggcgagctgcgctatcttcctttccatccgtatatactttcaacttcccacctctctgcctcaaactaaatacacctaatatccgttcccttcgcgtccttttgaaggacaatcttttatcttactgcaaatggcagcttgatgatccatccaagagaaacatatcccttcgttgttcagctccgccagatgctccaaatcgcatgcgctatttgggctgctcatatggatatctcatcttctcctatcatgagaagaactgcctctttgttgatgcttacactggcactaagctgaagtctcccaaactcaacttcatgggcgacagggatatctactacggcatccttacggctccacttaattcacccaactcacatctgatactttgttcgaggtcttccatattctattggcaggttggaacaaactcttggacaaagcacgtttatggcggtgagcacaTtcttcagattgtgctcttcaaaggtgagatttttgcgatggatgttcttggcaggcttcacaccatgcaatttgcacctgagctcagcatacaggaagtagcggttctgcgacgagaagaaatggttacaggcccacgttctgggccatggctggtggcctgtggtgaaatgcttctcatggttgatttgtcaacagaccgcgaccaattgcctcgcacctttcaagtctttcgtcttgagttttctgctgaaacagttgagtgtgtgaagatggaaaggttggaaaatcaggctctctttgtcaaccttgaTgggaGggaccctacattctcttgcacgagccctgAaagatggggcggaaagagtaactggatttatgttgcgaaaccatctggagattctggtgaaccttggaccgcggtcgagctcggtcagccagttcctagtagaatagaccgcgtcccagactttcaagtagacaacatgtgggtggtacccagTttgatttatgatgtcaaccaatga
More
|
|||||||
| Protein seq | MDGSRQEMPPPTELSALGHRVTVMTQEAVGKLLLQKGPLRKPATHQCLSSTLCEPHVWPGLLESLLHQIIALLSSFQDFLAFSATCHSWRAALSSFPSVYTFNFPPLCLKLNTPNIRSLRVLLKDNLLSYCKWQLDDPSKRNISLRCSAPPDAPNRMRYLGCSYGYLIFSYHEKNCLFVDAYTGTKLKSPKLNFMGDRDIYYGILTAPLNSPNSHLILCSRSSIFYWQVGTNSWTKHVYGGEHILQIVLFKGEIFAMDVLGRLHTMQFAPELSIQEVAVLRREEMVTGPRSGPWLVACGEMLLMVDLSTDRDQLPRTFQVFRLEFSAETVECVKMERLENQALFVNLDGRDPTFSCTSPERWGGKSNWIYVAKPSGDSGEPWTAVELGQPVPSRIDRVPDFQVDNMWVVPSLIYDVNQ
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0000930 | OsPr106_06g0000930.02 | Chr06 | 647694 | 649951 | + | IsoSeq | ||
| CDS seq | atgtttggccaggtctcctggaaagcctccttcaccaaatcattgctttgcttagctcattccaggactttcttgcttttagtgccacctgccactcttggcgagctgcgctatcttcctttccatccgtatatactttcaacttcccacctctctgcctca |
|||||||
| Protein seq | MFGQVSWKASFTKSLLCLAHSRTFLLLVPPATLGELRYLPFHPYILSTSHLSAS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr06 | 647836 | 648562 | + | OsPr106_06g0000930.01 | OsPr106_06g0000930.02,OsPr106_06g0000930.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.097204 | 9.010031 | 1.270245 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0113600 | RBH | 0.862049 | 0.0 | 1.916083 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02340 | RBH | 0.565773 | 0.0 | 0.461584 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0113600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0000950 | RBH | 0.0 | 2.183140 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0000950 | RBH | 0.0 | 0.0 | 1.189553 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000920 | RBH | 0.525448 | 2.311871 | 2.744917 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0000920 | RBH | 0.128789 | 0.144632 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000720 | RBH | 1.181753 | 1.965338 | 2.840619 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0011100 | RBH | 4.4130855 | 5.2548155 | 22.0575335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000900 | RBH | 0.063280 | 0.209460 | 0.199110 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0011900 | RBH | 3.3216125 | 2.224988 | 24.536013 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000930 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000930 | RBH | 0.238588 | 2.963738 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000950 | RBH | 1.198716 | 10.220110 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000930 | RBH | 0.118613 | 0.153621 | 0.296280 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000880 | RBH | 0.073653 | 2.047696 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000910 | RBH | 0.0 | 0.0 | 0.217695 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000920 | RBH | 0.0 | 5.170761 | 1.796732 |
