Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_05g0020820 | OGI:05063860 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr05:24434263-24435100 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgagtggtgttgcggcgccggcgccgagcgtgttcgaggcggcgcggccggcgttggagagcggtggcggcggtggaggcgcgccgccgccggggagggcggacgcgagcttcgacaccaacatggtgatcatcctggcggcgctcttcttcgcgctgctgttcgccatcgggctcaactcgctggcgcggtgcgcgctccggtgcgggggccggggcgcggccgccgcaggcggcggcggcggcggaggaggaggaggagcggcggcggccggggtggggtgcggcggcatcaagaagcgcgcgctgaggagcatcccggtggaggtgtactgcggcggggaggagacggcggagaccgacgtgtgcgccatctgcctcggcgagttcgcggacggcgagaaggtgcgcgtgctgccgcggtgccggcacgggttccacgtccggtgcgtcgacgcctggctggtctcgcacggctcctgcccgacgtgccgccgccaggtgatcggcggcggcgggagcacgccgccgccggacagcgacaccatcgccgtggtcgtagcatgatgtgagagacaaaagatatactactccagtagtctttgtagctagctgggctcctgcctggcctctttggcgccaatcccttctaaaaaatatctcgctgatcgatctgatctctccggatattttccggcgaacggctagtgactagtgactcatcagcttgttgtggcgaatgtattgacgggtgcccaattggcccaaattggtcactgtatatacacgttcgacatcgccgtcccgaaatgtactgtaccactaacattttcgt
More
|
||||||||||
| CDS seq | atggcgagtggtgttgcggcgccggcgccgagcgtgttcgaggcggcgcggccggcgttggagagcggtggcggcggtggaggcgcgccgccgccggggagggcggacgcgagcttcgacaccaacatggtgatcatcctggcggcgctcttcttcgcgctgctgttcgccatcgggctcaactcgctggcgcggtgcgcgctccggtgcgggggccggggcgcggccgccgcaggcggcggcggcggcggaggaggaggaggagcggcggcggccggggtggggtgcggcggcatcaagaagcgcgcgctgaggagcatcccggtggaggtgtactgcggcggggaggagacggcggagaccgacgtgtgcgccatctgcctcggcgagttcgcggacggcgagaaggtgcgcgtgctgccgcggtgccggcacgggttccacgtccggtgcgtcgacgcctggctggtctcgcacggctcctgcccgacgtgccgccgccaggtgatcggcggcggcgggagcacgccgccgccggacagcgacaccatcgccgtggtcgtagcatga
More
|
||||||||||
| Protein seq | MASGVAAPAPSVFEAARPALESGGGGGGAPPPGRADASFDTNMVIILAALFFALLFAIGLNSLARCALRCGGRGAAAAGGGGGGGGGGAAAAGVGCGGIKKRALRSIPVEVYCGGEETAETDVCAICLGEFADGEKVRVLPRCRHGFHVRCVDAWLVSHGSCPTCRRQVIGGGGSTPPPDSDTIAVVVA |
||||||||||
| Function | RING-H2 finger protein ATL72 [UniProtKB/Swiss-Prot:Q9SG96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_05g0020820 | OsPr106_05g0020820.01 | Chr05 | 24434263 | 24435100 | + | NAM | ||
| CDS seq | atggcgagtggtgttgcggcgccggcgccgagcgtgttcgaggcggcgcggccggcgttggagagcggtggcggcggtggaggcgcgccgccgccggggagggcggacgcgagcttcgacaccaacatggtgatcatcctggcggcgctcttcttcgcgctgctgttcgccatcgggctcaactcgctggcgcggtgcgcgctccggtgcgggggccggggcgcggccgccgcaggcggcggcggcggcggaggaggaggaggagcggcggcggccggggtggggtgcggcggcatcaagaagcgcgcgctgaggagcatcccggtggaggtgtactgcggcggggaggagacggcggagaccgacgtgtgcgccatctgcctcggcgagttcgcggacggcgagaaggtgcgcgtgctgccgcggtgccggcacgggttccacgtccggtgcgtcgacgcctggctggtctcgcacggctcctgcccgacgtgccgccgccaggtgatcggcggcggcgggagcacgccgccgccggacagcgacaccatcgccgtggtcgtagcatga
More
|
|||||||
| Protein seq | MASGVAAPAPSVFEAARPALESGGGGGGAPPPGRADASFDTNMVIILAALFFALLFAIGLNSLARCALRCGGRGAAAAGGGGGGGGGGAAAAGVGCGGIKKRALRSIPVEVYCGGEETAETDVCAICLGEFADGEKVRVLPRCRHGFHVRCVDAWLVSHGSCPTCRRQVIGGGGSTPPPDSDTIAVVVA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.606983 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0478000 | RBH | 1.509420 | 1.124083 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g40020 | RBH | 1.019601 | 0.755189 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0478000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020870 | RBH | 0.847159 | 2.925457 | 0.550173 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020820 | RBH | 0.152792 | 1.194064 | 1.070295 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020720 | RBH | 5.147455 | 0.0 | 2.952498 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020720 | RBH | 0.239237 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037440 | RBH | 15.069350 | 0.0 | 1.914657 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0363900 | RBH | 9.030472 | 7.0667475 | 0.1212495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020430 | RBH | 0.442725 | 0.115984 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0373400 | RBH | 8.014132 | 5.7617395 | 0.7403805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020650 | RBH | 0.098860 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020650 | RBH | 0.374062 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020730 | RBH | 5.054454 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020800 | RBH | 1.160974 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020800 | RBH | 0.950778 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020260 | RBH | 0.760348 | 0.0 | 0.859295 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020700 | RBH | 0.510469 | 0.0 | 0.843087 |
