Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_05g0013340 | OGI:01011440 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr05:17245886-17247196 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatacaccaacaccacacgttgatgcatagtgaccagctaacttgcatttcgtgcacaccttgatcactttgttcttcgatgtgttctccggatttgtggggcatccagttctatagtgccccttcagatgacagttcgaacaaatgcgcttttttcggactccaccatctactggggacttcagcctggtggacctaggtcggccacgctttgcccgacgatcaggtggcagtggcaagctttgtacggcctgatgagccgcggggtcttcattttgttcacctccttgatccggtccagcaggttcatcatttgggggatcagtgtaccccatgggagattcgttggtaccggccactagtttaatctcatccagtgcgtcagttatatgtttcatagcaaggtggaaagcatcaaccgatatgtcaccttgtttggacaagtctatacatgcatggtagagcagtgtgtggcggtgtgtcctggaagaggcagcatctttgtcattcctgaagctctcaaggttgctgccagatccttctctggcactaatactccatcttcttagaatgtacttatctgggatgcttctgcagcctatgtgtgtcattacctacatgaacaatgaaaaacggaaatgataaactaaactgcttatacatcaaaactaattttttttagggtaactatggcttatacatttattgtccatatttgattgtggcgcaagaaatttcatcataacaagcattaggaatgctgttttgaaactttctttctcagcctttgacatttgccctctgtggtgtttatctaatacatcctccaatacctccttgttaacgtccttaaaactagcaactttcattctttcagcaattaacctcttgacatgagaaacaaactcaacattgggtgcttgcagctcctcccctacgcaaggaatcccaagcaccttcttaacatcctcaggagacagtggcaaaacctcaccactttctagttcgatagccgaacgtgttggggatacccgtgataaaagccagtagctgaagtcacgatggtttgttatgaggggcatatgcagcagcccctcaaaacccatctcagctaccagctctttcttttcagcactaaatctctgtatgataggtgtgatggaagatggtacacaacgcgaaaccggtgccacgaatttaacacgaacagccttcttccttgtaggtggagtgacaaagtcatcatcatcatgaatggaacgacgcttcacatttcttctcacgctcgcacactttggaagccgcggcat
More
|
||||||||||
| CDS seq | atgccgcggcttccaaagtgtgcgagcgtgagaagaaatgtgaagcgtcgttccattcatgatgatgatgactttgtcactccacctacaaggaagaaggctgttcgtgttaaattcgtggcaccggtttcgcgttgtgtaccatcttccatcacacctatcatacagagatttagtgctgaaaagaaagagctggtagctgagatgggttttgaggggctgctgcatatgcccctcataacaaaccatcgtgacttcagctactggcttttatcacgggtatccccaacacgttcggctatcgaactagaaagtggtgaggttttgccactgtctcctgaggatgttaagaaggtgcttgggattccttgcgtaggggaggagctgcaagcacccaatgttgagtttgtttctcatgtcaagaggttaattgctgaaagaatgaaagttgctagttttaaggacgttaacaaggaggtattggaggatgtattagataaacaccacagagggcaaatgtcaaaggctgagaaagaaagtttcaaaacagcattcctaatgcttgtaatgacacacataggctgcagaagcatcccagataagtacattctaagaagatggagtattagtgccagagaaggatctggcagcaaccttgagagcttcaggaatgacaaagatgctgcctcttccaggacacaccgccacacactgctctaccatgcatgtatagacttgtccaaacaaggtgacatatcggttgatgctttccaccttgctatgaaacatataactgacgcactggatgagattaaactagtggccggtaccaacgaatctcccatggggtacactgatcccccaaatgatgaacctgctggaccggatcaaggaggtgaacaaaatgaagaccccgcggctcatcaggccgtacaaagcttgccactgccacctgatcgtcgggcaaagcgtggccgacctaggtccaccaggctgaagtccccagtagatggtggagtccgaaaaaagcgcatttgttcgaactgtcatctgaaggggcactatagaactggatgccccacaaatccggagaacacatcgaagaacaaagtgatcaaggtgtgcacgaaatgcaagttagctggtcactatgcatcaacgtgtggtgttggtgtatag
More
|
||||||||||
| Protein seq | MPRLPKCASVRRNVKRRSIHDDDDFVTPPTRKKAVRVKFVAPVSRCVPSSITPIIQRFSAEKKELVAEMGFEGLLHMPLITNHRDFSYWLLSRVSPTRSAIELESGEVLPLSPEDVKKVLGIPCVGEELQAPNVEFVSHVKRLIAERMKVASFKDVNKEVLEDVLDKHHRGQMSKAEKESFKTAFLMLVMTHIGCRSIPDKYILRRWSISAREGSGSNLESFRNDKDAASSRTHRHTLLYHACIDLSKQGDISVDAFHLAMKHITDALDEIKLVAGTNESPMGYTDPPNDEPAGPDQGGEQNEDPAAHQAVQSLPLPPDRRAKRGRPRSTRLKSPVDGGVRKKRICSNCHLKGHYRTGCPTNPENTSKNKVIKVCTKCKLAGHYASTCGVGV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_05g0013340 | OsPr106_05g0013340.01 | Chr05 | 17245886 | 17247196 | - | NAM | ||
| CDS seq | atgccgcggcttccaaagtgtgcgagcgtgagaagaaatgtgaagcgtcgttccattcatgatgatgatgactttgtcactccacctacaaggaagaaggctgttcgtgttaaattcgtggcaccggtttcgcgttgtgtaccatcttccatcacacctatcatacagagatttagtgctgaaaagaaagagctggtagctgagatgggttttgaggggctgctgcatatgcccctcataacaaaccatcgtgacttcagctactggcttttatcacgggtatccccaacacgttcggctatcgaactagaaagtggtgaggttttgccactgtctcctgaggatgttaagaaggtgcttgggattccttgcgtaggggaggagctgcaagcacccaatgttgagtttgtttctcatgtcaagaggttaattgctgaaagaatgaaagttgctagttttaaggacgttaacaaggaggtattggaggatgtattagataaacaccacagagggcaaatgtcaaaggctgagaaagaaagtttcaaaacagcattcctaatgcttgtaatgacacacataggctgcagaagcatcccagataagtacattctaagaagatggagtattagtgccagagaaggatctggcagcaaccttgagagcttcaggaatgacaaagatgctgcctcttccaggacacaccgccacacactgctctaccatgcatgtatagacttgtccaaacaaggtgacatatcggttgatgctttccaccttgctatgaaacatataactgacgcactggatgagattaaactagtggccggtaccaacgaatctcccatggggtacactgatcccccaaatgatgaacctgctggaccggatcaaggaggtgaacaaaatgaagaccccgcggctcatcaggccgtacaaagcttgccactgccacctgatcgtcgggcaaagcgtggccgacctaggtccaccaggctgaagtccccagtagatggtggagtccgaaaaaagcgcatttgttcgaactgtcatctgaaggggcactatagaactggatgccccacaaatccggagaacacatcgaagaacaaagtgatcaaggtgtgcacgaaatgcaagttagctggtcactatgcatcaacgtgtggtgttggtgtatag
More
|
|||||||
| Protein seq | MPRLPKCASVRRNVKRRSIHDDDDFVTPPTRKKAVRVKFVAPVSRCVPSSITPIIQRFSAEKKELVAEMGFEGLLHMPLITNHRDFSYWLLSRVSPTRSAIELESGEVLPLSPEDVKKVLGIPCVGEELQAPNVEFVSHVKRLIAERMKVASFKDVNKEVLEDVLDKHHRGQMSKAEKESFKTAFLMLVMTHIGCRSIPDKYILRRWSISAREGSGSNLESFRNDKDAASSRTHRHTLLYHACIDLSKQGDISVDAFHLAMKHITDALDEIKLVAGTNESPMGYTDPPNDEPAGPDQGGEQNEDPAAHQAVQSLPLPPDRRAKRGRPRSTRLKSPVDGGVRKKRICSNCHLKGHYRTGCPTNPENTSKNKVIKVCTKCKLAGHYASTCGVGV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0152500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g37550 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0152500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019100 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013360 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0013200 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0013220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0013350 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0257900 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013270 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G012950 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0009320 | RBH | 0.0 | 0.0 | 0.0 |
