Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0024070 | OGI:04085500 | 12/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:30141720-30141896 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgacgaccgataagtgcgctctgctggccgctgagaacggccatggcggcggaggtccagtcgccgtgtcgttcaacaccaatgccatcgtcctgctcgccctcctcgtctgcggcctcggcgcggtcgtgctccacgtcgtcctccagtgcgcgctccgcgtcatgccgtag |
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| CDS seq | atggcgacgaccgataagtgcgctctgctggccgctgagaacggccatggcggcggaggtccagtcgccgtgtcgttcaacaccaatgccatcgtcctgctcgccctcctcgtctgcggcctcggcgcggtcgtgctccacgtcgtcctccagtgcgcgctccgcgtcatgccgtag |
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| Protein seq | MATTDKCALLAAENGHGGGGPVAVSFNTNAIVLLALLVCGLGAVVLHVVLQCALRVMP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0024070 | OsPr106_04g0024070.01 | Chr04 | 30141720 | 30141896 | + | NAM | ||
| CDS seq | atggcgacgaccgataagtgcgctctgctggccgctgagaacggccatggcggcggaggtccagtcgccgtgtcgttcaacaccaatgccatcgtcctgctcgccctcctcgtctgcggcctcggcgcggtcgtgctccacgtcgtcctccagtgcgcgctccgcgtcatgccgtag |
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| Protein seq | MATTDKCALLAAENGHGGGGPVAVSFNTNAIVLLALLVCGLGAVVLHVVLQCALRVMP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 10.012904 | 2.982690 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g09270 | SBH | 0.695848 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006620 | SBH | 0.0 | 10.014650 | 1.732224 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028700 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006570 | SBH | 0.0 | 0.0 | 2.006582 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030950 | SBH | 0.160093 | 0.257116 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0452200 | RBH | 2.436918 | 4.8938025 | 2.5806785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022840 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0493500 | RBH | 0.013439 | 0.0081385 | 0.016123 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0006030 | SBH | 0.224724 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006240 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023690 | RBH | 0.0 | 0.652041 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006240 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023020 | RBH | 0.0 | 0.0 | 0.0 |
