Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0018340 | OGI:04074190 | 15/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:25562995-25564987 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcttcagatggcacgagaatcactcgcctctctctcacctcttcttcctcagctccgttccctacttccctccctctccggcgtccgccgccgccgccgccgccgccgcgccggcacaccatggcggcttcgccgtgagctcatcatgagcttcaagcacggctccgactccgatatctccctcccgcaccaatgccagcctcctccctccgcctccgcgccctcctcgcgtcgccggcaccgctccccgcgcgcgcgctcctcgccgcccacgccctcctgctcacgtccggcctcgccgcggactccgCccCTCCTCGCGCACTTCGCCAGGCACCTCGCCTCCGCGGCCGCGCGCTCCTCCTCCTCCGCCGCCGCCGCCTCCGCCTTCCGCGCGCTGCTCCTCCTCCGCCCGCGCTGCGCACACCCGTTCAACGCTCTCATCTCCAGCCTCACCCATGCGGGCGACCCCTCCGCGGCGTTCCGCGCCTTCGCGCTCCTCCTCGTCGCGTCCGGCGCGGGCGCGGGCGCGCGGCCGGACGGGTACACGCTCCCCGCGGCGCTCAAGGCGTGCGCGCGGCTGGGCGGCGGCCTCCGGGAGGGCTGCCAGGCGCACGCGGTCGCGGAGAAGGCCGGGTTCCTGGGGCGCGTCCCTGTGCAGAACGCGCTGGTCACGTTCTACGGTGCCTGCGGCCAGTGTGGCGACGCGAGGAAGGTGTTCGACGAAATGGCAGAGCGGGACGTTGGtgtcatggaccgcgctgttgtctgcgttcaccaggggaggtatgttcatggaggctctcggggtccttgctgagatggacgttacaccgaacgaggtaacactggcaagcgtgcttgtcgcttgtggaaatctggggacggcacgggctgggaaggccgtgcatggatggtacttcaggcgggagaaggagctgaacctaattgttggcaatgctctgttagatatgtatgtcaagtgcgagaaactggatcttgcaaggagggtatttgacatgcttttggcgagggacattgtttcatggacggttatgataagtggcttggtgcagtgcaagcgtcctagtgaagcattggaggtgttcaatgcgatgcagatatcgggagtgaagccagacaaggttgttctttccactgtcctctcagcttgtgcaagcttgggcgcactggagtctggtaggtgggttcatgagtacatagaacggaagggcatcgagtgggatgtgcatgtggggacttcagttgttgatatgtacgtcaagtgtggatgcttggacaccgctgtttccatcttccaagagatgcccctcaagaatgtatcttcctggaatgcgttgatcaatgggTttgcattgcatggtcgtggcagggaggctcttgactgctttgacaggatggttgcatcaggtttgcaccccaatgaggtcacttttataactgtccttggtgcatgttgccactctggtttagtgcaagaaggccgtcagttgtttgagttgatgacaaagtcctacaagctctcaccatgggaagatcattatggttgcatggttgatcttcttggaagagctgggctcatccaggaagcatatgatgtaattaaagccatgcctatgagacccggtgtgttcacatgggtaaccctactaagtgcatgccaagctcatggacgaatggatttctcgcagcagattcttatgcatatccatgagttggagtcctctgggaatgggatttaTGtccttctctccaacatgtatgcagtgagtgatagatGggcagatgtagggaaggcgagagggttcatgaatgagaaaggcatgcagaaggaaccaggatccagtgtgattgaggtgaatgggaagacctgtgaattcttagttgggcaacagaaccatctgtatatggatgatgtacgtgcaatgctttccatacttatgaagcaaatacatctggatggtctctag
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| CDS seq | atgcttcagatggcacgagaatcactcgcctctctctcacctcttcttcctcagctccgttccctacttccctccctctccggcgtccgccgccgccgccgccgccgccgcgccggcacaccatggcggcttcgccgtgagctcatcatgagcttcaagcacggctccgactccgatatctccctcccgcaccaatgccagcctcctccctccgcctccgcgccctcctcgcgtcgccggcaccgctccccgcgcgcgcgctcctcgccgcccacgccctcctgctcacgtccggcctcgccgcggactccgCccCTCCTCGCGCACTTCGCCAGGCACCTCGCCTCCGCGGCCGCGCGCTCCTCCTCCTCCGCCGCCGCCGCCTCCGCCTTCCGCGCGCTGCTCCTCCTCCGCCCGCGCTGCGCACACCCGTTCAACGCTCTCATCTCCAGCCTCACCCATGCGGGCGACCCCTCCGCGGCGTTCCGCGCCTTCGCGCTCCTCCTCGTCGCGTCCGGCGCGGGCGCGGGCGCGCGGCCGGACGGGTACACGCTCCCCGCGGCGCTCAAGGCGTGCGCGCGGCTGGGCGGCGGCCTCCGGGAGGGCTGCCAGGCGCACGCGGTCGCGGAGAAGGCCGGGTTCCTGGGGCGCGTCCCTGTGCAGAACGCGCTGGTCACGTTCTACGGTGCCTGCGGCCAGTGTGGCGACGCGAGGAAGGTGTTCGACGAAATGGCAGAGCGGGACGTTGGtgtcatggaccgcgctgttgtctgcgttcaccaggggagcgtgcttgtcgcttgtggaaatctggggacggcacgggctgggaaggccgtgcatggatggtacttcaggcgggagaaggagctgaacctaattgttggcaatgctctgttagatatgtatgtcaagtgcgagaaactggatcttgcaaggagggtatttgacatgcttttggcgagggacattgtttcatggacggttatgataagtggcttggtgcagtgcaagcgtcctagtgaagcattggaggtgttcaatgcgatgcagatatcgggagtgaagccagacaaggttgttctttccactgtcctctcagcttgtgcaagcttgggcgcactggagtctggtaggtgggttcatgagtacatagaacggaagggcatcgagtgggatgtgcatgtggggacttcagttgttgatatgtacgtcaagtgtggatgcttggacaccgctgtttccatcttccaagagatgcccctcaagaatgtatcttcctggaatgcgttgatcaatgggTttgcattgcatggtcgtggcagggaggctcttgactgctttgacaggatggttgcatcaggtttgcaccccaatgaggtcacttttataactgtccttggtgcatgttgccactctggtttagtgcaagaaggccgtcagttgtttgagttgatgacaaagtcctacaagctctcaccatgggaagatcattatggttgcatggttgatcttcttggaagagctgggctcatccaggaagcatatgatgtaattaaagccatgcctatgagacccggtgtgttcacatgggtaaccctactaagtgcatgccaagctcatggacgaatggatttctcgcagcagattcttatgcatatccatgagttggagtcctctgggaatgggatttaTGtccttctctccaacatgtatgcagtgagtgatagatGggcagatgtagggaaggcgagagggttcatgaatgagaaaggcatgcagaaggaaccaggatccagtgtgattgaggtgaatgggaagacctgtgaattcttagttgggcaacagaaccatctgtatatggatgatgtacgtgcaatgctttccatacttatgaagcaaatacatctggatggtctctag
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| Protein seq | MLQMARESLASLSPLLPQLRSLLPSLSGVRRRRRRRRAGTPWRLRRELIMSFKHGSDSDISLPHQCQPPPSASAPSSRRRHRSPRARSSPPTPSCSRPASPRTPPLLAHFARHLASAAARSSSSAAAASAFRALLLLRPRCAHPFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVGVMDRAVVCVHQGSVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWADVGKARGFMNEKGMQKEPGSSVIEVNGKTCEFLVGQQNHLYMDDVRAMLSILMKQIHLDGL |
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| Function | Pentatricopeptide repeat-containing protein At4g38010 [UniProtKB/Swiss-Prot:Q9SZK1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0018340 | OsPr106_04g0018340.01 | Chr04 | 25562995 | 25564987 | + | NAM | ||
| CDS seq | atgcttcagatggcacgagaatcactcgcctctctctcacctcttcttcctcagctccgttccctacttccctccctctccggcgtccgccgccgccgccgccgccgccgcgccggcacaccatggcggcttcgccgtgagctcatcatgagcttcaagcacggctccgactccgatatctccctcccgcaccaatgccagcctcctccctccgcctccgcgccctcctcgcgtcgccggcaccgctccccgcgcgcgcgctcctcgccgcccacgccctcctgctcacgtccggcctcgccgcggactccgCccCTCCTCGCGCACTTCGCCAGGCACCTCGCCTCCGCGGCCGCGCGCTCCTCCTCCTCCGCCGCCGCCGCCTCCGCCTTCCGCGCGCTGCTCCTCCTCCGCCCGCGCTGCGCACACCCGTTCAACGCTCTCATCTCCAGCCTCACCCATGCGGGCGACCCCTCCGCGGCGTTCCGCGCCTTCGCGCTCCTCCTCGTCGCGTCCGGCGCGGGCGCGGGCGCGCGGCCGGACGGGTACACGCTCCCCGCGGCGCTCAAGGCGTGCGCGCGGCTGGGCGGCGGCCTCCGGGAGGGCTGCCAGGCGCACGCGGTCGCGGAGAAGGCCGGGTTCCTGGGGCGCGTCCCTGTGCAGAACGCGCTGGTCACGTTCTACGGTGCCTGCGGCCAGTGTGGCGACGCGAGGAAGGTGTTCGACGAAATGGCAGAGCGGGACGTTGGtgtcatggaccgcgctgttgtctgcgttcaccaggggagcgtgcttgtcgcttgtggaaatctggggacggcacgggctgggaaggccgtgcatggatggtacttcaggcgggagaaggagctgaacctaattgttggcaatgctctgttagatatgtatgtcaagtgcgagaaactggatcttgcaaggagggtatttgacatgcttttggcgagggacattgtttcatggacggttatgataagtggcttggtgcagtgcaagcgtcctagtgaagcattggaggtgttcaatgcgatgcagatatcgggagtgaagccagacaaggttgttctttccactgtcctctcagcttgtgcaagcttgggcgcactggagtctggtaggtgggttcatgagtacatagaacggaagggcatcgagtgggatgtgcatgtggggacttcagttgttgatatgtacgtcaagtgtggatgcttggacaccgctgtttccatcttccaagagatgcccctcaagaatgtatcttcctggaatgcgttgatcaatgggTttgcattgcatggtcgtggcagggaggctcttgactgctttgacaggatggttgcatcaggtttgcaccccaatgaggtcacttttataactgtccttggtgcatgttgccactctggtttagtgcaagaaggccgtcagttgtttgagttgatgacaaagtcctacaagctctcaccatgggaagatcattatggttgcatggttgatcttcttggaagagctgggctcatccaggaagcatatgatgtaattaaagccatgcctatgagacccggtgtgttcacatgggtaaccctactaagtgcatgccaagctcatggacgaatggatttctcgcagcagattcttatgcatatccatgagttggagtcctctgggaatgggatttaTGtccttctctccaacatgtatgcagtgagtgatagatGggcagatgtagggaaggcgagagggttcatgaatgagaaaggcatgcagaaggaaccaggatccagtgtgattgaggtgaatgggaagacctgtgaattcttagttgggcaacagaaccatctgtatatggatgatgtacgtgcaatgctttccatacttatgaagcaaatacatctggatggtctctag
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| Protein seq | MLQMARESLASLSPLLPQLRSLLPSLSGVRRRRRRRRAGTPWRLRRELIMSFKHGSDSDISLPHQCQPPPSASAPSSRRRHRSPRARSSPPTPSCSRPASPRTPPLLAHFARHLASAAARSSSSAAAASAFRALLLLRPRCAHPFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVGVMDRAVVCVHQGSVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWADVGKARGFMNEKGMQKEPGSSVIEVNGKTCEFLVGQQNHLYMDDVRAMLSILMKQIHLDGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.387551 | 0.000000 | 1.172142 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0488200 | RBH | 0.579914 | 0.951808 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41120 | RBH | 0.275631 | 0.453660 | 0.006227 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0488200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017920 | RBH | 0.156574 | 0.000000 | 0.383794 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018720 | RBH | 0.071489 | 0.0 | 0.413870 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018410 | RBH | 0.0 | 0.0 | 1.085818 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018140 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022380 | SBH | 0.394882 | 4.895392 | 5.179493 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0312500 | SBH | 0.185483 | 0.3481335 | 0.1390275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017130 | RBH | 0.053843 | 0.089259 | 0.104693 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0381000 | RBH | 0.721219 | 1.007399 | 3.1794305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017630 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017470 | RBH | 0.012099 | 1.486321 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017520 | RBH | 1.310925 | 3.502128 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017980 | RBH | 0.148427 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018130 | RBH | 0.177315 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017420 | RBH | 0.026578 | 0.0 | 0.197464 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017360 | RBH | 0.000000 | 0.0 | 1.310282 |
