Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0016600 | OGI:04070640 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:24272592-24277450 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gggacgtgagtacatgacatgaagacaccaaagaatcccaaattatatgaggtccataaattttatttcccacacccattccaggcgaatgcattgcaaaaacagttggtgcgcacatccaaaaGaagagagggtgcacacctgcatatgcggctactatcatttgctccagtgaagtgctaccagcgccactagctcggatcgttgtgggtatgtggcaccaaaagcatgtggagattttggtatgataacccactctacctcatagctctggtacgagatacgtccttccacatgggaagttcctgtgcagacgtaacaagggagttagagcaagataagcatcatgctaacattatccacacattcatgttgcacaaaccagaatttagtgatgaagaaccaaacctacagctagataaaagttgggtcttctgttaggttgctcctcaggaatccaagaatgaatgattgctgctacatacataccagccaatggaaaatttgtatgagcagatgagaaaaaggttatgtatatgtgcatgagttaaaacatttaacctgagcataataaagattaaaaggaaaagttgtattggttgcagaagaaaaggaagtcatcgcaagtaaTGtgggagtgggcaattggatttgttgaacctgtgaaagtcctcgctacaaaaagatcatgaacctgcccacagaagaacccgttcatgatatgacataatgaaagtggaagcactaaaatgtgcctctacgaaaagaatacttggttccacattgcatttacaaatgcctgatcaagtgcagagtgagctacgtatcaaatttttacgtgcgaggtaccgtaccatgaactgtgggttatgcatcttcaaatatgtgtagttcttttagaatcaacaattgtggcgatataacagtacttatatgaaaagctgcctagttcactacagtcattgccaaataatgtccagtgtagctacagtaccaatatagtaattcagtaagcaccaaacagaaaactaccaaggatgatctcctcaatgttcctttctagcttggttccccatgatgttgacttttcagtacacaagtgaacaattttctcttccatggtatagatggaacttggaagagtgggtcagtaaaaactaagcataagctccaagaaacagagtgatccgaccttacatggttacaccacagattgggtacaaggtatctagagtgcccttggtatgggggtttcagtgcttcgacacaagaaggaaacgagaacaagatgaatagcatgtcaatatcaagttatcaaccacaatttcaggtatgccagaatagtgtgatgaacaaacaaatcataaagcaaaaatcagaaacgttgttaagttactcttcaagaacacaactgatggccactacatacctgttggtggaaaataaactcaacgtgagcagacgagatcgtgataataatatgttttgattctcaagagcactttgcacctgtgtgttcctagcagcataggctgctaaaacaccagctatccagctcccttaatattttatcacAaGaactcttcaaatgaagatttCcctgaacattttaagatatcaaaggcaaaattgcattagtagtagatataaagggaagcagtgatgcactagagtgaaaggaaatataggaaattgaatttgctgaacctgtacaggtctttactccaccacagcacgtccatttctaatctgtccagagagcaaacattgaaaggtatataagatattgaaggttgaagcagaaaatggaagtaatgatgattaacaaaaatgtcatatcatcaaatatgccagtcaagtggttcagtgagttaacataccacgagccataggacacaatttcagtattttgttgctgtaaaagccaacacaatagtccttttagaatactgcacataatgttcctatgcccatagtcaagcagtattctgcacagttataattaccaagatgatgtaaccatcagcacaaaacagaaattcactgccataatgctgcaactgccatgtcccagttcacctggctcagtgctatgacgtaagaacataagcatggcagccaccttaagctgaatcatgacaattttctctttttatgatatggttgcacattatattactgagaatattctccagtctacacgcaatagagtaaccctcttttatggtggaaaccatgacacatcaggaagcatacattacatccaactccaatttcatatttaccctttgggctttgttcctaaattctgatgaatctactacctcattcccccattctgtcaatccattgaccattgactcactccagattccagagacaaaagaaatgcacatatcctctgaacttctaaattcagattgttcaaagaaagaatgctgccattgggtcagttgatttttcataaacctgtaagacaaccatttctgacatagagaagatgaactagatcacaactgctcacaaggacctaggaaaaggcatagctccaattaaacttacccacaaatatcaattgtgctccaacctatactcttttccactccatgattcttcatcatgtctcttagtttctctatttcattccatttctcagcactaccatacgaatttgacattaaaatgtagtacccatcattttctgggtcagaagcaaacgccttctttgcaacccgtaaacccatttcaaaattgtcatgcattttgcaggcaccaagtaaagttccccatattccaccatcaggttctattggcattgcagaaaccacatcttctgcttcttgaagatgcccagatttccctagaagatccaccatacaggcatagtgcttcaggttaggctcaagggagtattcctccattctagtgaacaactccctgcccttgtcaacaagtcctgcatggcagcaagcagacagaatggcaagaaaagtgaggctattaggcttaacatttcctctttccatcatactaaaaagttttaatgcttgtattgcttcaccatgcatcccatagcctgatatcatcacattccaagtaacaacatccctttcgagcatggaatcaaacatttttcttgcgatgccaagttgtccgcatttcatatacatgtcaacaagtgctgtgctaattgacaaatcacactccagccccacatctttcacatgagaatgtatgagctctccatgttccaatgcagccaaatttgcacaagatgaaatgacagagaccaaggttgctgagttgggtttaacaccttcagtgagcatctgatcatacagtaacaaagcatcctttgaatgccccaggtgagaatagctggaaattaatgcactccatgtgacaacatcctttgttttgaccagaccaaatattttccgtgcaacgtcaaaattaccacaccttccatacatgctaattagtgcatttgcaactgatgaattttcaccggctaagtgtttgattgaatagcaatgtgctgattgacctaatcgtagtctaccaagccttgaacaagaagaaataatggaaatcaaactgttggtgtcatattcaaactcatccttgtctctgaactgcatttctcgatacaactccaagcatttcaaatcaagtccagctttgcaatatgctacaaccattgaactccatgagtctgtgtctcgttgatgcaacattctgaaaaccatggctgcaatatcaacctgtttgcactttgcatacatcgagatcaaagcattcccaatcagaacactatctccaaagtttctcctcactatagctgcatgaaacgtcttccctccacgcaccttagcatcattacccaaccctgcaagtaaacaactaataacaacctcgtctggttgcagaccagactcctccatgcccaggaacaactccacagccttctcagcatggcctgccctacagtatgctccaatcaagctggtccaggaaaccaaatctttctccggcaactccgggaacaaaatccgtgcatcctcagtgctatcgcacttagtgtacatagaaaaaagcgatgaaaccaccgacgggcagtgtccaaccccggccttgaccccaaacccatgcaagcatgtcccaacagagagctcccctagcaccccgcaggcctccaacccactctccatcgtccgtgagttcggcctcgcaccgccatcacctgcagaccgaaccattcgcaccaagtagctcagcccttccccgcactgcccgttacacacgcacccggagatcacggcagtccacgcgaccacgtccctctcgggcatttcgtcgaacagcctcacggcgtcgcggacgctgccgcacctggcgtacatgtagaccagcgacgacgcgaccgcgactgaaccatcgccctccaggaggccgaacctgacggagtaggcgtggacggcggcgcctacggggagggcgccgagctccgcggcggcggaggcgacgaggggcgcggtgaagcgggagggccgcgcccccgaggcgcgcatgcggcggtgcgcggagagcgcggaggcgaagtcggaggcgcggtggcgggagcggagcagggagttccagaggaaggcgtccgggcagggggaggcggcgaaggcgagcgcggcgagggcggggaggccggcggaggagtaggcggagacgagcttggcggcgaagtcggggcgcggggagaggccggatgtgacggcgaGCgcgtggagggtgagcagcgaggggagcggcggcggggacggcgaggcgaggaagcggtggagggcggcgagcggaggagttggcgg
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| CDS seq | atgcgcgcctcgggggcgcggccctcccgcttcaccgcgcccctcgtcgcctccgccgccgcggagctcggcgccctccccgtaggcgccgccgtccacgcctactccgtcaggttcggcctcctggagggcgatggttcagtcgcggtcgcgtcgtcgctggtctacatgtacgccaggtgcggcagcgtccgcgacgccgtgaggctgttcgacgaaatgcccgagagggacgtggtcgcgtggactgccgtgatctccgggtgcgtgtgtaacgggcagtgcggggaagggctgagctacttggtgcgaatggttcggtctgcaggtgatggcggtgcgaggccgaactcacggacgatggagagtgggttggaggcctgcggggtgctaggggagctctctgttgggacatgcttgcatgggtttggggtcaaggccggggttggacactgcccgtcggtggtttcatcgcttttttctatgtacactaagtgcgatagcactgaggatgcacggattttgttcccggagttgccggagaaagatttggtttcctggaccagcttgattggagcatactgtagggcaggccatgctgagaaggctgtggagttgttcctgggcatggaggagtctggtctgcaaccagacgaggttgttattagttgtttacttgcagggttgggtaatgatgctaaggtgcgtggagggaagacgtttcatgcagctatagtgaggagaaactttggagatagtgttctgattgggaatgctttgatctcgatgtatgcaaagtgcaaacaggttgatattgcagccatggttttcagaatgttgcatcaacgagacacagactcatggagttcaatggttgtagcatattgcaaagctggacttgatttgaaatgcttggagttgtatcgagaaatgcagttcagagacaaggatgagtttgaatatgacaccaacagtttgatttccattatttcttcttgttcaaggcttggtagactacgattaggtcaatcagcacattgctattcaatcaaacacttagccggtgaaaattcatcagttgcaaatgcactaattagcatgtatggaaggtgtggtaattttgacgttgcacggaaaatatttggtctggtcaaaacaaaggatgttgtcacatggagtgcattaatttccagctattctcacctggggcattcaaaggatgctttgttactgtatgatcagatgctcactgaaggtgttaaacccaactcagcaaccttggtctctgtcatttcatcttgtgcaaatttggctgcattggaacatggagagctcatacattctcatgtgaaagatgtggggctggagtgtgatttgtcaattagcacagcacttgttgacatgtatatgaaatgcggacaacttggcatcgcaagaaaaatgtttgattccatgctcgaaagggatgttgttacttggaatgtgatgatatcaggctatgggatgcatggtgaagcaatacaagcattaaaactttttagtatgatggaaagaggaaatgttaagcctaatagcctcacttttcttgccattctgtctgcttgctgccatgcaggacttgttgacaagggcagggagttgttcactagaatggaggaatactcccttgagcctaacctgaagcactatgcctgtatggtggatcttctagggaaatctgggcatcttcaagaagcagaagatgtggtttctgcaatgccaatagaacctgatggtggaatatggggaactttacttggtgcctgcaaaatgcatgacaattttgaaatgggtttacgggttgcaaagaaggcgtttgcttctgacccagaaaatgatgggtactacattttaatgtcaaattcgtatggtagtgctgagaaatggaatgaaatagagaaactaagagacatgatgaagaatcatggagtggaaaagagtataggttggagcacaattgatatttgtgggtttatgaaaaatcaactgacccaatggcagcattctttctttgaacaatctgaatttagaagttcagaggatatgtgcatttcttttgtctctggaatctggagtgagtcaatggtcaatggattgacagaatgggggaatgaggtagtagattcatcagaatttaggaacaaagcccaaaggcttaaggtggctgccatgcttatgttcttacgtcatagcactgagccaggaacttcccatgtggaaggacgtatctcgtaccagagctatgaggtagagtgggttatcataccaaaatctccacatgcttttggtgccacatacccacaacgatccgagctagtggcgctggtagcacttcactggagcaaatga
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| Protein seq | MRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAAMVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGLVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSISTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICGFMKNQLTQWQHSFFEQSEFRSSEDMCISFVSGIWSESMVNGLTEWGNEVVDSSEFRNKAQRLKVAAMLMFLRHSTEPGTSHVEGRISYQSYEVEWVIIPKSPHAFGATYPQRSELVALVALHWSK |
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| Function | Pentatricopeptide repeat-containing protein At4g39952, mitochondrial [UniProtKB/Swiss-Prot:Q3E9N1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0016600 | OsPr106_04g0016600.01 | Chr04 | 24272592 | 24277450 | - | NAM | ||
| CDS seq | atgcgcgcctcgggggcgcggccctcccgcttcaccgcgcccctcgtcgcctccgccgccgcggagctcggcgccctccccgtaggcgccgccgtccacgcctactccgtcaggttcggcctcctggagggcgatggttcagtcgcggtcgcgtcgtcgctggtctacatgtacgccaggtgcggcagcgtccgcgacgccgtgaggctgttcgacgaaatgcccgagagggacgtggtcgcgtggactgccgtgatctccgggtgcgtgtgtaacgggcagtgcggggaagggctgagctacttggtgcgaatggttcggtctgcaggtgatggcggtgcgaggccgaactcacggacgatggagagtgggttggaggcctgcggggtgctaggggagctctctgttgggacatgcttgcatgggtttggggtcaaggccggggttggacactgcccgtcggtggtttcatcgcttttttctatgtacactaagtgcgatagcactgaggatgcacggattttgttcccggagttgccggagaaagatttggtttcctggaccagcttgattggagcatactgtagggcaggccatgctgagaaggctgtggagttgttcctgggcatggaggagtctggtctgcaaccagacgaggttgttattagttgtttacttgcagggttgggtaatgatgctaaggtgcgtggagggaagacgtttcatgcagctatagtgaggagaaactttggagatagtgttctgattgggaatgctttgatctcgatgtatgcaaagtgcaaacaggttgatattgcagccatggttttcagaatgttgcatcaacgagacacagactcatggagttcaatggttgtagcatattgcaaagctggacttgatttgaaatgcttggagttgtatcgagaaatgcagttcagagacaaggatgagtttgaatatgacaccaacagtttgatttccattatttcttcttgttcaaggcttggtagactacgattaggtcaatcagcacattgctattcaatcaaacacttagccggtgaaaattcatcagttgcaaatgcactaattagcatgtatggaaggtgtggtaattttgacgttgcacggaaaatatttggtctggtcaaaacaaaggatgttgtcacatggagtgcattaatttccagctattctcacctggggcattcaaaggatgctttgttactgtatgatcagatgctcactgaaggtgttaaacccaactcagcaaccttggtctctgtcatttcatcttgtgcaaatttggctgcattggaacatggagagctcatacattctcatgtgaaagatgtggggctggagtgtgatttgtcaattagcacagcacttgttgacatgtatatgaaatgcggacaacttggcatcgcaagaaaaatgtttgattccatgctcgaaagggatgttgttacttggaatgtgatgatatcaggctatgggatgcatggtgaagcaatacaagcattaaaactttttagtatgatggaaagaggaaatgttaagcctaatagcctcacttttcttgccattctgtctgcttgctgccatgcaggacttgttgacaagggcagggagttgttcactagaatggaggaatactcccttgagcctaacctgaagcactatgcctgtatggtggatcttctagggaaatctgggcatcttcaagaagcagaagatgtggtttctgcaatgccaatagaacctgatggtggaatatggggaactttacttggtgcctgcaaaatgcatgacaattttgaaatgggtttacgggttgcaaagaaggcgtttgcttctgacccagaaaatgatgggtactacattttaatgtcaaattcgtatggtagtgctgagaaatggaatgaaatagagaaactaagagacatgatgaagaatcatggagtggaaaagagtataggttggagcacaattgatatttgtgggtttatgaaaaatcaactgacccaatggcagcattctttctttgaacaatctgaatttagaagttcagaggatatgtgcatttcttttgtctctggaatctggagtgagtcaatggtcaatggattgacagaatgggggaatgaggtagtagattcatcagaatttaggaacaaagcccaaaggcttaaggtggctgccatgcttatgttcttacgtcatagcactgagccaggaacttcccatgtggaaggacgtatctcgtaccagagctatgaggtagagtgggttatcataccaaaatctccacatgcttttggtgccacatacccacaacgatccgagctagtggcgctggtagcacttcactggagcaaatga
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| Protein seq | MRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAAMVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGLVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSISTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICGFMKNQLTQWQHSFFEQSEFRSSEDMCISFVSGIWSESMVNGLTEWGNEVVDSSEFRNKAQRLKVAAMLMFLRHSTEPGTSHVEGRISYQSYEVEWVIIPKSPHAFGATYPQRSELVALVALHWSK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 1.788248 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0463800 | RBH | 0.266788 | 0.185774 | 0.148733 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g38980 | RBH | 0.231665 | 0.178091 | 0.055115 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0463800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016170 | RBH | 0.287018 | 0.0 | 0.798744 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016910 | RBH | 0.0 | 0.000000 | 0.441118 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0016640 | RBH | 0.187343 | 0.661168 | 0.790913 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016370 | RBH | 0.060285 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0023560 | SBH | 1.894350 | 2.085201 | 0.682824 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0361300 | RBH | 6.5122355 | 13.135874 | 21.585671 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015400 | RBH | 0.088887 | 0.000000 | 0.180333 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0359700 | RBH | 7.2252345 | 17.2668915 | 13.6457415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015950 | RBH | 0.049137 | 0.108104 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0015840 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0015810 | RBH | 0.0 | 5.371668 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016330 | RBH | 0.099311 | 0.070797 | 0.092360 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016440 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G015630 | RBH | 0.105715 | 0.911298 | 0.240104 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0015700 | RBH | 0.785659 | 2.527531 | 1.192343 |
