Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0013570 | OGI:04064640 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:21892495-21894293 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgttccagcttaatctctattcttgcgtatgttctttatagtattattaggcagacaatagatggtgctgcttgtggccccccgatccccagaaaacccactgagatgcagcccacttgccacaagcaaagaagcttccaattgtgcaccttctggcctttgccaaaagcatttgtctcaactggttgtcaggaccaatgggatagcccgtcgtactaaaccaaataaataaatgaaaccatattaTttgttgtgtcgaagagtctataaatacttcatcacaaaccagcttatggttctatcttaggaagaacagggcagacccacgcaactaggtgagcccaagatcttcagttgcaggattctgaagaaggcttttgtccatacaccaagggtagagatgtactcaagaaggatactgctgcacaccccattctctgggcaaccctctggccctagtcagccggtgtctggagccaccatcgTtgaaggtggttctcccgggagcaactttgatgcaaacatcgtcatgatcctagctgttcttctctgtgcactgatctgtgcgcttgggctcaactcaattgtccggtgcgcgctaaggtgttcaagccggatggtggtggatcctgagccgagtcgggtcacgcggctggctcagagcgggctgaggaggaaggccctccgatccatgcctatccttctctactcaactgggttgaagctcaatactgtgagtcctatgtgtgcaatctgcctctccgactttgaggacggggagcatgtcagggtcctcccaaagtgcaaccatgggttccatgtcagatgcattgaccggtggctcttggcgcggtcgacgtgcccaacatgccggcagtccctgtttggggcaccacagaaggcctctggctgctccgagtccgagggaagccaggccgagccagcgccagctcgccctgtgctggcgccacttagacctgaaggtttggttactccatatgatttttagagccttccattgcttctagttgttgcatcaagcataagggagtgtggtgaaatagaactaggttgtgaacgtgtgatttttaggtgttactgccaaactggcttgtactgctgtacattgtgtggtagatctgtagtaaaaaaaaattgctgtacagattgatttggaattctattagtgtgttaatacctgatgttgctcgagaatgaggcgtggaaagaaaaaaaaaaggtgctattggcttctgtgaatcacattttctatgccattttgtagggaaaaaataggagtgaagatttcagatctaatcatatggcagtgctgcaccaccaatcaaccattatgttggttggaaatcaagcattagttgctaaggttcaagtcagtgggacaagcatattctcctgcaattatcgagagatcagggctttgttatctgaatgcattgtggtcatctatgtCccagaattgacaggtgggtccacggccgactatgccctgtgcactttggctattttgtgctgtctgctccaaaagcttgaaaggtaagtggccaatgcacacacaatcttttctgcagcttcctggaaagctaatgcctttaaagaatctgctagcttagcaactgtgtggttcatatgaatttgaaagaaaaataacaaggagatcacttaactgtgcacactgaaaacgaaaactgcttggatgcccactgaatgggaagataaactctttttctgaacttgcagtggttatgagaatgttgtagcagtgttacatataacttga
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| CDS seq | atgttccagcttaatctctattcttgcgaagaacagggcagacccacgcaactaggtgagcccaagatcttcagttgcaggattctgaagaaggcttttgtccatacaccaagggtagagatgtactcaagaaggatactgctgcacaccccattctctgggcaaccctctggccctagtcagccggtgtctggagccaccatcgTtgaaggtggttctcccgggagcaactttgatgcaaacatcgtcatgatcctagctgttcttctctgtgcactgatctgtgcgcttgggctcaactcaattgtccggtgcgcgctaaggtgttcaagccggatggtggtggatcctgagccgagtcgggtcacgcggctggctcagagcgggctgaggaggaaggccctccgatccatgcctatccttctctactcaactgggttgaagctcaatactgtgagtcctatgtgtgcaatctgcctctccgactttgaggacggggagcatgtcagggtcctcccaaagtgcaaccatgggttccatgtcagatgcattgaccggtggctcttggcgcggtcgacgtgcccaacatgccggcagtccctgtttggggcaccacagaaggcctctggctgctccgagtccgagggaagccaggccgagccagcgccagctcgccctgtgctggcgccacttagacctgaaggtgttactgccaaactggcttgtactgctgtacattgtgtgggaaaaaataggagtgaagatttcagatctaatcatatggcagtgctgcaccaccaatcaaccattatgttggttggaaatcaagcattagttgctaaggttcaagtcagtgggacaagcatattctcctgcaattatcgagagatcagggctttgttatctgaatgcattgtggtcatctatgtCccagaattgacaggtgggtccacggccgactatgccctgtgcactttggctattttgtgctgtctgctccaaaagcttgaaagtggttatgagaatgttgtagcagtgttacatataacttga
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| Protein seq | MFQLNLYSCEEQGRPTQLGEPKIFSCRILKKAFVHTPRVEMYSRRILLHTPFSGQPSGPSQPVSGATIVEGGSPGSNFDANIVMILAVLLCALICALGLNSIVRCALRCSSRMVVDPEPSRVTRLAQSGLRRKALRSMPILLYSTGLKLNTVSPMCAICLSDFEDGEHVRVLPKCNHGFHVRCIDRWLLARSTCPTCRQSLFGAPQKASGCSESEGSQAEPAPARPVLAPLRPEGVTAKLACTAVHCVGKNRSEDFRSNHMAVLHHQSTIMLVGNQALVAKVQVSGTSIFSCNYREIRALLSECIVVIYVPELTGGSTADYALCTLAILCCLLQKLESGYENVVAVLHIT |
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| Function | RING-H2 finger protein ATL78 [UniProtKB/Swiss-Prot:Q6NQG7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0013570 | OsPr106_04g0013570.01 | Chr04 | 21892495 | 21894293 | + | NAM | ||
| CDS seq | atgttccagcttaatctctattcttgcgaagaacagggcagacccacgcaactaggtgagcccaagatcttcagttgcaggattctgaagaaggcttttgtccatacaccaagggtagagatgtactcaagaaggatactgctgcacaccccattctctgggcaaccctctggccctagtcagccggtgtctggagccaccatcgTtgaaggtggttctcccgggagcaactttgatgcaaacatcgtcatgatcctagctgttcttctctgtgcactgatctgtgcgcttgggctcaactcaattgtccggtgcgcgctaaggtgttcaagccggatggtggtggatcctgagccgagtcgggtcacgcggctggctcagagcgggctgaggaggaaggccctccgatccatgcctatccttctctactcaactgggttgaagctcaatactgtgagtcctatgtgtgcaatctgcctctccgactttgaggacggggagcatgtcagggtcctcccaaagtgcaaccatgggttccatgtcagatgcattgaccggtggctcttggcgcggtcgacgtgcccaacatgccggcagtccctgtttggggcaccacagaaggcctctggctgctccgagtccgagggaagccaggccgagccagcgccagctcgccctgtgctggcgccacttagacctgaaggtgttactgccaaactggcttgtactgctgtacattgtgtgggaaaaaataggagtgaagatttcagatctaatcatatggcagtgctgcaccaccaatcaaccattatgttggttggaaatcaagcattagttgctaaggttcaagtcagtgggacaagcatattctcctgcaattatcgagagatcagggctttgttatctgaatgcattgtggtcatctatgtCccagaattgacaggtgggtccacggccgactatgccctgtgcactttggctattttgtgctgtctgctccaaaagcttgaaagtggttatgagaatgttgtagcagtgttacatataacttga
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| Protein seq | MFQLNLYSCEEQGRPTQLGEPKIFSCRILKKAFVHTPRVEMYSRRILLHTPFSGQPSGPSQPVSGATIVEGGSPGSNFDANIVMILAVLLCALICALGLNSIVRCALRCSSRMVVDPEPSRVTRLAQSGLRRKALRSMPILLYSTGLKLNTVSPMCAICLSDFEDGEHVRVLPKCNHGFHVRCIDRWLLARSTCPTCRQSLFGAPQKASGCSESEGSQAEPAPARPVLAPLRPEGVTAKLACTAVHCVGKNRSEDFRSNHMAVLHHQSTIMLVGNQALVAKVQVSGTSIFSCNYREIRALLSECIVVIYVPELTGGSTADYALCTLAILCCLLQKLESGYENVVAVLHIT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0013570 | OsPr106_04g0013570.02 | Chr04 | 21892796 | 21893694 | + | IsoSeq | ||
| CDS seq | atgtcagggtcctcccaaagtgcaaccatgggttccatgtcagatgcattgaccggtggctcttggcgcggtcgacgtgcccaacatgccggcagtccctgtttggggcaccacagaaggcctctggctgctccgagtccgagggaagccaggccgagccagcgccagctcgccctgtgctggcgccacttagacctgaaggtttggttactccatatgatttttagagccttccattgc
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| Protein seq | MSGSSQSATMGSMSDALTGGSWRGRRAQHAGSPCLGHHRRPLAAPSPREARPSQRQLALCWRHLDLKVWLLHMIFRAFHC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.293422 | 7.682087 | 3.610953 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0419550 | RBH | 0.0 | 0.0 | 0.663756 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34230 | RBH | 0.000000 | 0.0 | 0.118524 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0419550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013060 | RBH | 0.212739 | 5.877121 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013900 | RBH | 0.164145 | 0.0 | 0.909571 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013600 | RBH | 1.661325 | 8.452540 | 0.652955 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013240 | RBH | 0.0 | 0.056018 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020130 | RBH | 0.0 | 0.0 | 1.621333 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0328100 | RBH | 1.676335 | 11.826581 | 0.8398505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012480 | RBH | 0.107629 | 0.346367 | 0.892255 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0325600 | RBH | 3.556204 | 11.199288 | 0.1207785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012670 | RBH | 0.000000 | 1.538439 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012670 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013250 | RBH | 0.0 | 0.497781 | 0.789290 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013460 | RBH | 0.062464 | 2.101785 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012620 | RBH | 0.164862 | 0.0 | 0.846329 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012620 | RBH | 0.0 | 24.774136 | 2.579128 |
