Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0012240 | OGI:04061900 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:20738932-20743271 | ||||||||
| Gene Symbol | ERF101, OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113 | ||||||||||
| DNA seq | TATATATGCAACTGGTTAGACTTTTTTTTCCCTTTGCCCATAATAAAGCCATCTCTCATAAAGCCATCGACCTCATCTCCTCCTCCTCCTCTCTCTGTCTCTCTGGCTGTTCTTATCAGTTTACGTTGTCCTCATCGTCGCCGGCGCCGCCCTCCAAAGCTTCATAGATAGCTCGATCGATCGATCCCGTCGTCGTCGATCGTCGTCGACGCAGCAGCCTCGCCGGCGGCCGGAGACTGGGgagatcgatcgagagggagggaggttgagtaaggtggatccacgggtcaggcatggcaagaggcccctaccggccggcgaggaggaggaagaagaccagccaccgcctccgacaccaccagcaaagcaggagcagcaggacgaggaggagctcgccgcggtcgtcgtcagcggcggcggagcaggagcagctccggcgccggagacgtacgcgcagtactactacgcggcgcgcgccgaccacgacgcctccgccatggtcaccgcgctagcccacgtcatccgcgccgcccccgacctgcacctcccccaccacccatcctcctccgcctccgccgccgcccacccgcagcaggcttcttccttctacccgaccgccgccgccgccgcctcctcgccgtccgaccagctcgccgccgccgccgccgctgccgaagagcaaggtaccagctgatccattcaccgcacaagtaaattcctctctctcaccgcgccgcgtgccacgccccgattgcgaaagcatggcacgcgcgagcgcgccataatttggaagcttcgcatccgccaacgccaacgcccacgccgccgtcgtcctcgtcctacgttaatccccatggctctagctagctaattaccgggttaagtagcttcgaagcttgcaatgcatgcttaattagcggtaattgatccataattaattaattagttgaaccaaacgagggttaataagttaattaactcccaaatcgttgcctatttcgtgccggaagatacgctaaattaatagcgccatgtgagtattttatgcacacaccgtattacgttatccctgacgatcgaagggggagtccgaattagtcacggattaattagcaagttgcagTATtattattattattattatgggattaattagtgggaattaattagcttagtgtgttttggtgggtgcagggaggaggcggcactacagaggtgttcgacagcggccatgggggaagtgggcggcggagataagggacccgaagaaggcggcgagggtgtggctggggacgttcgacacggcggaggacgccgccatcgcctacgacgaggcggcgctccggttcaaggggaccaaggccaagctcaacttccccgagcgcgtccagggccgcaccgacctcggcttcctcgtcacccgtggcatcccccccgccgccacccacGgtggcggctactacccctcgtcgtcgccggcggcgggggcatgccccccgccgcggcagcagcagacggtcgtgccgtacccggacctcatgcggtacgcgcagctgctgcagggcggcgtcggcggcagttacatgccgttcggcggcgccgcgacgatgtcgtcgtcgacggtgtcgtcctcgtcggcgccgcagatactcgacttctcgacgcagcagctcatccgggccggcccgccgtcgccaatgccatcgtcgggctccggctcggcgaccgcggcggcgtcgtccacgacgtcggcgtcgtcgcccggtgcatggccgtacggcggctcggagcgcaagaagaaggattcgtcgtcgtgacgtcactggatggatcgatcgatgcatgaatatgccatgcatttgagaggaagaggtcaagttttttttaagcaatggaaatggattacatcttcggcctcggcgcgtggacagaaagagatcaagtgatatggatcgagaagaatgtttagctgatctgctctttgatcgaggagatgaaaatgcatgcaatatgcatggaggggtaagtgttaagtggttaattggtgatttttgcgggttaattaattacatggacattaatttttcttttgatcaccttttgtttattttttctctgaaaactatcttcttttgttcatttttattttcttggaggtacttaattaattagctaggttaattagctggtgatttttagtttgttgtttccctCcttttgttcaagtgtgaactaattgtgcaaaattagtccaagtaaagcaaagagagaggattcttatttaattattggttaaacattacccttttttaagatgaaacatgatgtcttttttttaaaaaaaaatctgaatgattaccacctctttgtctacatctttggattgtagtggaagcttcttcttcactggtgatctctttggcagacattggaaatgtccaaaggataccataaatggatttcagtatacctttaggaataacattttgttgtttggtagcatgcatgatgggtatcaatcaaatttaacaacctttggaaaaaaataaGggggaatcttctccatcagcttctcttcttattaaaagatttgactcttttgtttagatacTtttatcatggttgcaatattggcatctgttctatcgatttatcatctacttaatcctccaatctcattctccgctgtaatgatatttaagcatgtgtcatagtggtatggatgcctttaatgcatgtagcatatttcaaactcagaacaagatgtacttttagaaaaattaaagttggaaccgtaacaagaatctagagaaaaccagaaaaaagctgcagtttggtgaggacattttacttttgcaatgatgctttgaggtgatgaagattatccacatacctaataattattcagttgtaagaaattaaaatagcatgaagtcatccatttcttttttttttcaaacgcttttgtacataagcaacatacatattccacccccaaagcactatagctagccacatatatatatatctacatatgtcttatatcatAaaaatgcttatagctagcttcaggtttttaatgacatgaacatgcatatgccacgtagatcttgagttaattatagtcagaggtgtggcgtaatgatctcaatgtttctagtgtaaatcataaaatacgtagatttgtgatttggtgccatgtgtcgagatttattcgatcaacttgccggcatgtgatgatacgaaataaggagagaacctctatcatgcaagtatcatccccatcccgtgcatctagaagctaatatatatgggcgatgcatgcaccaattcaatgccaaatcaaatgcattcaactgcatttttttgtatttgcgcatttttatataccagtacatctgtccacccatctatccagctacATatatgaGtgacaaaaattacaaccacactagcatttgtagatacatgtgtgtctttttctctatagctagcttgtgatgagaaccaaagagacagatccatgtacaagtgtcttgatgtaacagagatcatcattatacatgatttgtttccattaggtacgtatctctttcttaattttctctaccattggttgcatgaaacttattatatatataactattccaattaactaggtttatttaatttatacctgtcttttagtttgttcacactgggtgtgattgatggtgctgtggtgtgtttgccctttttctctcctttactttcatgatgggaacaagtatcaaaatttgacacgcacatttttttttctttttgccaaatgctactgctacctggcagctagcggccgatcgaactcgagcagaaagtgccagcagcaagcaagctagctttcgtgttaggcatgactcatgcctgttttgattttcaacacatatcatttatcgaaacagagaaaaaaaaattaaagaaaacgagtaccatgcatgcctaattatctctagtactagctttttaggcgcactattgtatattgtgtactatgaaagtatcgtgttgttgagatggatggtcttacacgtgtgcgccatgcttgattacttgtgcgtgattggcacctaacttgtgtgtgatcgatcgtgtcatcgtcctttgatagagaggataagacgcttctctcatcatcatctcagctggtctagctctctgcctaactagccaagattacctaacttaattggagaatgttctctcttaattgtattggcatgtttcaaagtcacttgagaattaggttAGagtgattttcaagtgaaatttagaaacatatcgaagtatatatgtatgcaaca
More
|
||||||||||
| CDS seq | atggtcaccgcgctagcccacgtcatccgcgccgcccccgacctgcacctcccccaccacccatcctcctccgcctccgccgccgcccacccgcagcaggcttcttccttctacccgaccgccgccgccgccgcctcctcgccgtccgaccagctcgccgccgccgccgccgctgccgaagagcaagggaggaggcggcactacagaggtgttcgacagcggccatgggggaagtgggcggcggagataagggacccgaagaaggcggcgagggtgtggctggggacgttcgacacggcggaggacgccgccatcgcctacgacgaggcggcgctccggttcaaggggaccaaggccaagctcaacttccccgagcgcgtccagggccgcaccgacctcggcttcctcgtcacccgtggcatcccccccgccgccacccacGgtggcggctactacccctcgtcgtcgccggcggcgggggcatgccccccgccgcggcagcagcagacggtcgtgccgtacccggacctcatgcggtacgcgcagctgctgcagggcggcgtcggcggcagttacatgccgttcggcggcgccgcgacgatgtcgtcgtcgacggtgtcgtcctcgtcggcgccgcagatactcgacttctcgacgcagcagctcatccgggccggcccgccgtcgccaatgccatcgtcgggctccggctcggcgaccgcggcggcgtcgtccacgacgtcggcgtcgtcgcccggtgcatggccgtacggcggctcggagcgcaagaagaaggattcgtcgtcgtga
More
|
||||||||||
| Protein seq | MVTALAHVIRAAPDLHLPHHPSSSASAAAHPQQASSFYPTAAAAASSPSDQLAAAAAAAEEQGRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLNFPERVQGRTDLGFLVTRGIPPAATHGGGYYPSSSPAAGACPPPRQQQTVVPYPDLMRYAQLLQGGVGGSYMPFGGAATMSSSTVSSSSAPQILDFSTQQLIRAGPPSPMPSSGSGSATAAASSTTSASSPGAWPYGGSERKKKDSSS |
||||||||||
| Function | Ethylene-responsive transcription factor ERF113 [UniProtKB/Swiss-Prot:Q9LYU3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0012240 | OsPr106_04g0012240.01 | Chr04 | 20738932 | 20743271 | + | NAM | ||
| CDS seq | atggtcaccgcgctagcccacgtcatccgcgccgcccccgacctgcacctcccccaccacccatcctcctccgcctccgccgccgcccacccgcagcaggcttcttccttctacccgaccgccgccgccgccgcctcctcgccgtccgaccagctcgccgccgccgccgccgctgccgaagagcaagggaggaggcggcactacagaggtgttcgacagcggccatgggggaagtgggcggcggagataagggacccgaagaaggcggcgagggtgtggctggggacgttcgacacggcggaggacgccgccatcgcctacgacgaggcggcgctccggttcaaggggaccaaggccaagctcaacttccccgagcgcgtccagggccgcaccgacctcggcttcctcgtcacccgtggcatcccccccgccgccacccacGgtggcggctactacccctcgtcgtcgccggcggcgggggcatgccccccgccgcggcagcagcagacggtcgtgccgtacccggacctcatgcggtacgcgcagctgctgcagggcggcgtcggcggcagttacatgccgttcggcggcgccgcgacgatgtcgtcgtcgacggtgtcgtcctcgtcggcgccgcagatactcgacttctcgacgcagcagctcatccgggccggcccgccgtcgccaatgccatcgtcgggctccggctcggcgaccgcggcggcgtcgtccacgacgtcggcgtcgtcgcccggtgcatggccgtacggcggctcggagcgcaagaagaaggattcgtcgtcgtga
More
|
|||||||
| Protein seq | MVTALAHVIRAAPDLHLPHHPSSSASAAAHPQQASSFYPTAAAAASSPSDQLAAAAAAAEEQGRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLNFPERVQGRTDLGFLVTRGIPPAATHGGGYYPSSSPAAGACPPPRQQQTVVPYPDLMRYAQLLQGGVGGSYMPFGGAATMSSSTVSSSSAPQILDFSTQQLIRAGPPSPMPSSGSGSATAAASSTTSASSPGAWPYGGSERKKKDSSS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.718798 | 7.713416 | 1.564560 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0398000 | RBH | 1.579731 | 0.773406 | 0.750630 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32620 | RBH | 0.984688 | 0.507236 | 0.164929 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0398000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011830 | RBH | 0.428556 | 3.566372 | 2.589877 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012630 | RBH | 0.000000 | 1.962192 | 0.166558 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012320 | RBH | 0.526723 | 2.258570 | 2.475079 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011980 | RBH | 0.027429 | 0.030794 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019020 | RBH | 0.0 | 4.444135 | 1.091465 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0310800 | RBH | 0.7564485 | 12.7838615 | 4.5048545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0011160 | RBH | 0.075724 | 0.279262 | 0.128749 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0308000 | RBH | 2.7568105 | 36.1270215 | 0.306124 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011820 | RBH | 0.0 | 0.332995 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011430 | RBH | 0.000000 | 5.146789 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011430 | RBH | 0.0 | 12.985542 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011930 | RBH | 0.144418 | 0.719263 | 0.120246 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0012180 | RBH | 0.091868 | 0.724107 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011350 | RBH | 0.163522 | 1.084439 | 0.463000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011340 | RBH | 0.248041 | 20.331194 | 1.611524 |
