Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_03g0034240 | OGI:03086160 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr03:33183928-33190521 | ||||||||
| Gene Symbol | MSL16, OsMSL16, - | ||||||||||
| DNA seq | cagcagaagcaacctgtaatgtaaatttacttacacgacagaagaacacaaggataaacgacgctgacagtagaacgatcactttaagtacggtaaaactggtactgctaaacggtaaaactggtattagggagagcgaaggttcctaaaggcatgtccacggattaccgcgagtttcacggtattactggtttagtccaaaccagatgggttggtaacaaactcatacgacagtacaacaaagcaggcactctcagttggcagtatcagcaggtagcccgaaatgctcctgaatgactcctgatggcgttttcccaaatccatcagcgattcccagcatgaccttgagcttctcctcttcactcttcacttgatcCAcacgcttcataacattggtgattagtgtactatatagtgaaccatcatcatcagctaagggcatagggtctgcaaggacggatctttcagaatcaagctgacgataaagactcaggacatgatccttctgggaataaagcttctgctctgccagcttgtactctgcttcctgagatctcttcagttctttaagagcatgatctatcgaatcttcgaacctgacagacagtgtgtgttgatcctcggtaatgtaagctggaagattttcaacagccctctgcaaatcattgtcagccaaatcaacataatatggaaaccctggaggagcatcctcttctggagcttgctggatcccaagcactgttacaccaccggtagcaggggaaacttctgcatgagacatatggaactcaattatgcacaattatagcagcaaagcaatacataaagcaacaacagaagtaaatctgagatccaaattgttgtcagtcctctatggttttaattgtgcaaaattacagacaacatgattagcagcagtatatctatagcaatgaagccatgggcatgacaggggagctagactccacatgttacaaaaactaccaaaacatcacttacatttttcaaaataaatggtctgtatggaacaaatcgcagatggttttgactagtatgatccaaatatcagcataatctatagagtttccgttctgtctaataacataagagggcaccaaatatctgggccattgcagctaggctgggcgctgtttgagcaatggattgtcctctggatatctagagcaatatatttgcctaatatagttctctatgatcagttgcattcaaaattaagttacctgcacttggagttgagttgataccattatcttccattttccaaacttcagcaagatcaaccccacactttagctgcatatagttgtaaaccatcagtgcatagccacaaactacttataagagatcaaaaagaagataaatggtgaccaaaatggaagtttccacaagtggctaaaaaaatAAaactgaccatacctttgccattgctgatctcataatgctctccaagctttttgctcttGtttgtcttgaaccacgcactaggcataagccagTattcaggataggttcaatgtcatcccttgattgaagagattggcatatttccaagaatttttctacgtgcagcatcaagttcgttttgttatcacaacgtctgcaacaatactgcatgtccaagtcaatacatcctccaactgttccagccataaaagtacggagagcacaatcaaggtgcccaatatgcccacatattttgttctcttctaggactgcctcacacttaatgtagctataacctccaaaggaatagtcaacaaccctgcggcagaaaacacagcagcactctcggcagaaatcaggcattttgcagcagaggtcacaatcctgtgccggagatgattcaatgaatccctctctctcaagtttacacaagttattcctggccttgcatggtccagctggatcagcttgccttgcataaggacaaaagaccctcctcacttctccaCCTcctgaagacatttttggtgttaaagAacagcaaaaatacaagggaaaatcaacaaagtagcagaaaacatgcaaaggcagtatataggatgcattttctaacccgttaacacacaaaggaaagaacacacatctcaagtgaagaaaaaaatccctttggctacatgttacaaccaaggtattggatcaaacctcacatcaataccaggttagatatgaataaaagtaagacaaaatcagtttatatgctacatatgaattccgaatgaggcaaatgatctattttcctttatcggtgttacgatttggggaaaaacaccacttgaatcaatggaaaacaccacttgatagaaaagaatggagcttactgtaacttgactccagaatatagacgtaaaaaccagcgtcagtgttactctccgaagggggaaggagatagcgttcatggatccgcctcaatgagttggttcgcgcaaatggatccatcggcaccacgatgaggtagaggcagaagcaaggatcagattggcggctagggtttaggagcagagagtgcaagAGGTAAGCTGTGTAGAACAACCTATATATACAGTGGCGGAGCCAGAAATGGGCTTTACCCAGGCTGGGCAAACAAACCATCCTGGTATGGGCCCTCTATACCTGTAAATTTTACTTTCTATAAAGGGTTACAAGGGTCTTTCAGGACCAGGCCTGGCTGAAGCCCGAGCAGCCCACCCAggGcccgttgtcgctaatttatggataaaatatgtgtgttatacacaggataaacattaaaatgttcaaagcgcatccaccaaaaataacaaccaagtcttgaagcacttcccagattacacatgaacaaaagtattttgtaaatagataggatatcattctggctaaacaatattgagaacatagtttattggctacactatagaggcactgtaacaggagatttatcacatgataacagatatcgacattgatggtgcataggcacaagaaaaatcaaaagtgtggttagtacactgagaatctattgcattctgagaagcactgttgcctatcgactttattatttccaatgtatactttttccatttttatttccagtgtaacatggcaggtaacctgtgatgttttcacatttctacactagattatcctgttagttaggaggtatgctaagtggtagagctgaataaagttattgaagaaggtgcatcaaagtacaaaaccaatcaaagtgTttataacgataaggaatcgatggcacagactgtgtcaaaagaaagtctaaaaatgtggatcggggatacatagggtagagttccagtgatatgttagctacttaaaacAtaaaagattcaaaatatggaagtttatacaaaataacagtgaaaaaggtaagccatacaaaaatcagattttgattacacgagaaggtcactattagatagaggaaaggaacacagaaaggtcctcaggcaggtaggcatttttagtaagtaatgttgtatattaattacttcaagagaatcaaatagtaagtcacaaaaaaatatagtctcctatatgaaatgaatgtttttccAaaaagaaggtctaatcctacataagaagcgcccaatacacacaatgaaatgaatggtgtatggcactggctacttggtgaatatctctacaaataagcacctggtattatatgtagtccaagccgctagtcactacagcgtctgtaatggtctgctatagtattctaaaccgcacagaatccaatagtcaccacaactgccagtgagctgatgtcagagcccagtctctggtccggtggttgtacagcaccgctaggaaatactgtaaaagacaatcttacatggaaacagcaactaaaagaacataaaaggcaacagaaaggtttaacctctttggatacagtgtcctttagcagggatcttccaaataaacatagaaaagaatgtgttcggatccatatctggaaactctgtcttgataaattcttcaacctttagtctacttgtgaatgatgtctttttaccagtagcatcacgaaaacgtgagggcggtgtaaggtacctgttcacagatgtatccataacacaagttaatagtactgctaaaattcattttctagaccgaacaaccatagataactcaaacaattttggtggggaaggccagcggcctgttggtgggaggctgtttaaccttgccatcgacccagttcaagtcctaccactagcatgagtgtcccttctccttaatggaatgatagagctactggcccagttctaaaaataataatgaataatagcatacgagccttccaACacactagaagaattcacctaccaaacttggtctgattctaattaagaatcagtgtcctgtgtttattttcttctccttatagcaaaagtaaaaaacttcagatggaagctatttaggcctagaaaacagcattacctatcaagccagtggccagttgcagaagccctgtttcccactttccagctccattgatctccaggacatggccagttttcgggagcatagggcatacctgtaccacatgaattaccttcaactggcatagcaccattctcacttgtgaacttttctgatagatcctgctcctcagctatgttaatttctgttaccgcctcgctagggacctgaaagaaacaggaatctcatcagtcaagaacatatagccgaaattttactcatgtactgaactcagagactattgcgcagacttgcattcattctttgatttggtcaagtgaaagagaccaaaagaacagttagaacaatggattatctcaatgcagagaagcaattgtgtacagtgaagttttggcgagatgcaatggattacatacaaccttgcatgaatgaaatgatagacaatttgatgacagcagatgcacaaaataacaaacagaaattgtacagcggtatgagaacatgcagcacgcaggtaataacaaaaagctcaaggtacaatttatcttatttgcatttttttttaaaaaaatgcatatgcacctactgaacaaaaggatctggttaccctattttatcatagactactttgcatagattactgttgggccaagtgtagcttgcagctgcgaccaaatagtccacggaataattctgaccaagctagtaaaatactgtgtttatcacatgtaggtttatagggctaaagaaacactgcatgccacaattttggtgacgaaacaaacacttgcataagaaagcataacaaatagttagaggtggaaaaataaggattcaaccaatcaccctaccaattttactaatgctaaaccctcattcaacgaaatgaaaacaaatcatgtcagcaaaataattaattatatgtctcatatttattcagtttcagagatagatacctcgttttcattcaccatttctttcgaacttttgataataatgggtgacaccaaaacatttgttggtgtccgttgagattccatgtctttcaaacttttgacaatgggtgacaccaaaccatttgttggtgtccgttgaggtttctcctttggtgggtctcttcgcgccttttttgccggtggactctttgggctgccagaagctagacatctttctctatccttaccgaatagctctagtaacctatcgtaatgatcaatgggcttgttgatccatttcctggcttccggtttcctctacaagatcaaagcaaagagttcaaaacagcttgagaaatttcagcaatgctgattgattgacaacaaaaAATaaacagacctcgatgtactccctccaaacagttgggtcagcataaaacttcttgttcatcgcgctccacttaaagccactctggttctggaagaggttctcgcattcatggaagttctccttgatggacttgagacggttcttgatgtttgacctgtcgatggccaccccgaacctctcggcgaccccggagatgatgctatcgaaggccgcggagtgaaacctcccctcgcccctgttcccgatcgcctgctggtgcagcaacgcgtcgatgagataCTcgttcatcttctcggaccacaccaccgtctccctgccgcccggcctGgggcctcctcccgcattgccgccgccgctgccgctgccgctgccgctcgcgccggggctatacttgcctttcttcttcaccatctccccagccacaacgccgctcccccgcgagcgctccgccgccgccgcctacaccgcacgggccgcagcgggcgccgcgcaaacgaattgacgaaattgaattgaaccctccacccaatcccctctcctcgcccccccccccccccccccccccgcctttgctccgagcgattgcgcgatcaagccatctaGggtttacctaacgaacggatccgagatcagcaatcggcgagacgaggggggatgaggaggaaggattcaggattgggttggtgcgaTCctaccagcgaagaagcgtagcgagaggtggagcagcgtggaggaggaggaggaggggaacgaacgagccaacgaacgcgacgcgagagagagagaatgggagtagcc
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| CDS seq | atggtgaagaagaaaggcaagtatagccccggcgcgagcggcagcggcagcggcagcggcggcggcaatgcgggaggaggcccCaggccgggcggcagggagacggtggtgtggtccgagaagatgaacgAGtatctcatcgacgcgttgctgcaccagcaggcgatcgggaacaggggcgaggggaggtttcactccgcggccttcgatagcatcatctccggggtcgccgagaggttcggggtggccatcgacaggtcaaacatcaagaaccgtctcaagtccatcaaggagaacttccatgaatgcgagaacctcttccagaaccagagtggctttaagtggagcgcgatgaacaagaagttttatgctgacccaactgtttggagggagtacatcgagaggaaaccggaagccaggaaatggatcaacaagcccattgatcattacgataggttactagagctattcggtaaggatagagaaagatgtctagcttctggcagcccaaagagtccaccggcaaaaaaggcgcgaagagacccaccaaaggagaaacctcaacggacaccaacaaatggtttggtgtcacccattgtcaaaagtttgaaagacatggaatctcaacggacaccaacaaatgttttggtgtcacccattattatcaaaagttcgaaagaaatggtgaatgaaaacgaggtccctagcgaggcggtaacagaaattaacatagctgaggagcaggatctatcagaaaagttcacaagtgagaatggtgctatgccagttgaaggtaattcatgtggtacaggtatgccctatgctcccgaaaactggccatgtcctggagatcaatggagctggaaagtgggaaacagggcttctgcaactggccactggcttgataggtaccttacaccgccctcacgttttcgtgatgctactggtaaaaagacatcattcacaagtagactaaaggttgaagaatttatcaagacagagtttccagatatggatccgaacacattcttttctatgtttatttggaagatccctgctaaaggacactgtatccaaagaggAGGtggagaagtgaggagggtcttttgtccttatgcaaggcaagctgatccagctggaccatgcaaggccaggaataacttgtgtaaacttgagagagagggattcattgaatcatctccggcacaggattgtgacctctgctgcaaaatgcctgatttctgccgagagtgctgctgtgttttctgccgcagggttgttgactattcctttggaggttatagctacattaagtgtgaggcagtcctagaagagaacaaaatatgtgggcatattgggcaccttgattgtgctctccgtacttttatggctggaacagttggaggatgtattgacttggacatgcagtattgttgcagacgttgtgataacaaaacgaacttgatgctgcacgtagaaaaattcttggaaatatgccaatctcttcaatcaagggatgacattgaacctatcctgaatActggcttatgcctagtgcgtggttcaagacaaaCaagagcaaaaagcttggagagcattatgagatcagcaatggcaaagctaaagtgtggggttgatcttgctgaagtttggaaaatggaagataatggtatcaactcaactccaagtgcagaagtttcccctgctaccggtggtgtaacagtgcttgggatccagcaagctccagaagaggatgctcctccagggtttccatattatgttgatttggctgacaatgatttgcagagggctgttgaaaatcttccagcttacattaccgaggatcaacacacactgtctgtcaggttcgaagattcgatagatcatgctcttaaagaactgaagagatctcaggaagcagagtacaagctggcagagcagaagctttattcccagaaggatcatgtcctgagtctttatcgtcagcttgattctgaaagatccgtccttgcagaccctatgcccttagctgatgatgatggttcactatatagtacactaatcaccaatgttatgaagcgtgTGgatcaagtgaagagtgaagaggagaagctcaaggtcatgctgggaatcgctgatggatttgggaaaacgccatcaggagtcattcaggagcatttcgggctacctgctgatactgccaactga
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| Protein seq | MVKKKGKYSPGASGSGSGSGGGNAGGGPRPGGRETVVWSEKMNEYLIDALLHQQAIGNRGEGRFHSAAFDSIISGVAERFGVAIDRSNIKNRLKSIKENFHECENLFQNQSGFKWSAMNKKFYADPTVWREYIERKPEARKWINKPIDHYDRLLELFGKDRERCLASGSPKSPPAKKARRDPPKEKPQRTPTNGLVSPIVKSLKDMESQRTPTNVLVSPIIIKSSKEMVNENEVPSEAVTEINIAEEQDLSEKFTSENGAMPVEGNSCGTGMPYAPENWPCPGDQWSWKVGNRASATGHWLDRYLTPPSRFRDATGKKTSFTSRLKVEEFIKTEFPDMDPNTFFSMFIWKIPAKGHCIQRGGGEVRRVFCPYARQADPAGPCKARNNLCKLEREGFIESSPAQDCDLCCKMPDFCRECCCVFCRRVVDYSFGGYSYIKCEAVLEENKICGHIGHLDCALRTFMAGTVGGCIDLDMQYCCRRCDNKTNLMLHVEKFLEICQSLQSRDDIEPILNTGLCLVRGSRQTRAKSLESIMRSAMAKLKCGVDLAEVWKMEDNGINSTPSAEVSPATGGVTVLGIQQAPEEDAPPGFPYYVDLADNDLQRAVENLPAYITEDQHTLSVRFEDSIDHALKELKRSQEAEYKLAEQKLYSQKDHVLSLYRQLDSERSVLADPMPLADDDGSLYSTLITNVMKRVDQVKSEEEKLKVMLGIADGFGKTPSGVIQEHFGLPADTAN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_03g0034240 | OsPr106_03g0034240.01 | Chr03 | 33183928 | 33190521 | - | NAM | ||
| CDS seq | atggtgaagaagaaaggcaagtatagccccggcgcgagcggcagcggcagcggcagcggcggcggcaatgcgggaggaggcccCaggccgggcggcagggagacggtggtgtggtccgagaagatgaacgAGtatctcatcgacgcgttgctgcaccagcaggcgatcgggaacaggggcgaggggaggtttcactccgcggccttcgatagcatcatctccggggtcgccgagaggttcggggtggccatcgacaggtcaaacatcaagaaccgtctcaagtccatcaaggagaacttccatgaatgcgagaacctcttccagaaccagagtggctttaagtggagcgcgatgaacaagaagttttatgctgacccaactgtttggagggagtacatcgagaggaaaccggaagccaggaaatggatcaacaagcccattgatcattacgataggttactagagctattcggtaaggatagagaaagatgtctagcttctggcagcccaaagagtccaccggcaaaaaaggcgcgaagagacccaccaaaggagaaacctcaacggacaccaacaaatggtttggtgtcacccattgtcaaaagtttgaaagacatggaatctcaacggacaccaacaaatgttttggtgtcacccattattatcaaaagttcgaaagaaatggtgaatgaaaacgaggtccctagcgaggcggtaacagaaattaacatagctgaggagcaggatctatcagaaaagttcacaagtgagaatggtgctatgccagttgaaggtaattcatgtggtacaggtatgccctatgctcccgaaaactggccatgtcctggagatcaatggagctggaaagtgggaaacagggcttctgcaactggccactggcttgataggtaccttacaccgccctcacgttttcgtgatgctactggtaaaaagacatcattcacaagtagactaaaggttgaagaatttatcaagacagagtttccagatatggatccgaacacattcttttctatgtttatttggaagatccctgctaaaggacactgtatccaaagaggAGGtggagaagtgaggagggtcttttgtccttatgcaaggcaagctgatccagctggaccatgcaaggccaggaataacttgtgtaaacttgagagagagggattcattgaatcatctccggcacaggattgtgacctctgctgcaaaatgcctgatttctgccgagagtgctgctgtgttttctgccgcagggttgttgactattcctttggaggttatagctacattaagtgtgaggcagtcctagaagagaacaaaatatgtgggcatattgggcaccttgattgtgctctccgtacttttatggctggaacagttggaggatgtattgacttggacatgcagtattgttgcagacgttgtgataacaaaacgaacttgatgctgcacgtagaaaaattcttggaaatatgccaatctcttcaatcaagggatgacattgaacctatcctgaatActggcttatgcctagtgcgtggttcaagacaaaCaagagcaaaaagcttggagagcattatgagatcagcaatggcaaagctaaagtgtggggttgatcttgctgaagtttggaaaatggaagataatggtatcaactcaactccaagtgcagaagtttcccctgctaccggtggtgtaacagtgcttgggatccagcaagctccagaagaggatgctcctccagggtttccatattatgttgatttggctgacaatgatttgcagagggctgttgaaaatcttccagcttacattaccgaggatcaacacacactgtctgtcaggttcgaagattcgatagatcatgctcttaaagaactgaagagatctcaggaagcagagtacaagctggcagagcagaagctttattcccagaaggatcatgtcctgagtctttatcgtcagcttgattctgaaagatccgtccttgcagaccctatgcccttagctgatgatgatggttcactatatagtacactaatcaccaatgttatgaagcgtgTGgatcaagtgaagagtgaagaggagaagctcaaggtcatgctgggaatcgctgatggatttgggaaaacgccatcaggagtcattcaggagcatttcgggctacctgctgatactgccaactga
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| Protein seq | MVKKKGKYSPGASGSGSGSGGGNAGGGPRPGGRETVVWSEKMNEYLIDALLHQQAIGNRGEGRFHSAAFDSIISGVAERFGVAIDRSNIKNRLKSIKENFHECENLFQNQSGFKWSAMNKKFYADPTVWREYIERKPEARKWINKPIDHYDRLLELFGKDRERCLASGSPKSPPAKKARRDPPKEKPQRTPTNGLVSPIVKSLKDMESQRTPTNVLVSPIIIKSSKEMVNENEVPSEAVTEINIAEEQDLSEKFTSENGAMPVEGNSCGTGMPYAPENWPCPGDQWSWKVGNRASATGHWLDRYLTPPSRFRDATGKKTSFTSRLKVEEFIKTEFPDMDPNTFFSMFIWKIPAKGHCIQRGGGEVRRVFCPYARQADPAGPCKARNNLCKLEREGFIESSPAQDCDLCCKMPDFCRECCCVFCRRVVDYSFGGYSYIKCEAVLEENKICGHIGHLDCALRTFMAGTVGGCIDLDMQYCCRRCDNKTNLMLHVEKFLEICQSLQSRDDIEPILNTGLCLVRGSRQTRAKSLESIMRSAMAKLKCGVDLAEVWKMEDNGINSTPSAEVSPATGGVTVLGIQQAPEEDAPPGFPYYVDLADNDLQRAVENLPAYITEDQHTLSVRFEDSIDHALKELKRSQEAEYKLAEQKLYSQKDHVLSLYRQLDSERSVLADPMPLADDDGSLYSTLITNVMKRVDQVKSEEEKLKVMLGIADGFGKTPSGVIQEHFGLPADTAN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.087667 | 36.069328 | 39.450596 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0747200 | RBH | 4.548196 | 4.818633 | 22.282125 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g53590 | RBH | 2.814728 | 2.658958 | 4.499669 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0747200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0034590 | RBH | 1.576345 | 33.740494 | 18.813753 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034270 | RBH | 0.636938 | 8.786455 | 7.398976 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0034360 | RBH | 3.723734 | 18.089882 | 21.215691 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0034670 | RBH | 0.496083 | 0.639538 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0526200 | RBH | 12.1977445 | 26.1159175 | 20.8010385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034030 | RBH | 0.995665 | 2.241816 | 3.810370 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0525300 | RBH | 15.033669 | 23.8373645 | 30.019661 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0034460 | RBH | 0.643059 | 0.659822 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0034490 | RBH | 1.244252 | 21.455603 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034190 | RBH | 9.369873 | 40.333553 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0034280 | RBH | 1.680965 | 1.569724 | 2.903516 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034230 | RBH | 0.866523 | 14.877980 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034020 | RBH | 2.113064 | 8.422512 | 12.052545 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0033860 | RBH | 2.802232 | 35.782753 | 18.074835 |
