Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsPr106_03g0029690		OGI:03076650 \| 16/16			PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)			Chr03:29194241-29199643		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		atggtggaggagctcggcttcgacatcaatgtcggcagagagctgggtacgcgcgatgttcatacgtagagctctgctctgctctgccctgctcgcatatttgctcatcttgtgtattgcgtcatctgggagataatcatgtgccgatgatctctaatgtggattttttgcttctgatgttatccggtCcccccaggcataacagctttggcttctgctgcgttggatggaaggctggctactgcaaggtaccttcttgaccatggggctgatccaaataaaaagtgcaatgcaggctctgttcctcttcactgcgctgcaaaaaatggttacctttctactttcattcagatctacgttgaccggttaaTttcttgataaaagaaagaggaaaatacgtagcacggttctagaaggaatgattgatttgactaattttctaggagatggtataacctgtacatattccagTtttacttattttcattatgaatgtttgtacattctggaatttgtatttgccttgttataattaagtgggaataaatatattgtgttctttcagttacccatatcatcatattgcgtcacatcataaataatttactccatcaggtaaaagatgcattctttggtgtctaggtaggacatgaaaaatattattattacgaatcatgaatctttgaagaatatatactcgtctgttgtttagccatttatttgataattccttatttttcatgtcaatattgtcatgttacttttgtgcattttgtttagggcatgatgaagtagaacgactgttgctatctagaggagctagcgttgatatagcttattttcatgggacaccactacatattgctgctgcatatgggaaggccagcgtcatgaaagttttattggagcacgatgcagatgtaagaaatagattatatctcttttcaagtgagcttttagtgctaactttgtataatgcacatgcatgtagtactttggatctcggatccactgtgatctttctcttgtcctttttattgtaattgttactccctccgtttcatgttataagtcaccttgaCttttttctagtcaaacttagtttatagaaaaaattagcaacattttaaacaccaaatcagttccattaaatctagcattgaatatattttgataacatatttgttttgtgttaaaaatacatatatatttttctataaccttagtcaaacgtaaagaagtttgactaggaaaaaagacaaaacgacttataatatgaaacggagagagtattattcatctcctatagtaTtttggattactatgaattcaaatattgaagacttaaatgccttgcatgttttattgttgatgttgtgtaccatagcccttgctctatgatcttccataattcacacgtaattgacagatattaggtgctaatagtgttatggatttgcatCccccctatcttagtgcaggaacacggtagatttcttagatactctgtggggtgcaatggtgggcacacaaggttgtgaaccttgccactcaagcttgagtctcctttttaccttaacttttaagtgtggagtgataaatcttactccatgcatgaaaaaactgtgtttttggtccaattgatcgacacactcccatacacaattggattgaaaaactgttgttgcagttgacacttagccatgtattgtaaattgcatagggcttataattgaataaagtatggaggttcatgagaagagcaaatgccttttagggaatgcacaaaaggattgctcatctttctattaagaagaataacagcatttaatttgcatctatatttatatcccagcatttaatatctggcatattctctaacaaatgccattcagtaTGttttcactaaaagcaatattttttcccaatgtagccaaacaaggtttcagaagagttaggtacaccgttggttgcaactcttcatgctacttctcaaggattagctgaatctgtttcactgaagtgtaaaactactcgtcgaggtaacttgaatcccctttatgtgatcaatctatttgtatgaacagtggcattgacaattttgtctgtttcatacaaataggcaggtgctgacgttaacttcagtgatcgtgacactccgttggtggtagcaattactaatggcttgactaactgcattaaatacttgctaaaggctggtgcagaccctaatatcccaacttgtcatgtgagtttttgtactcatttttacttgctcgtttctttttcttatccaaaagttgagatcagtactagctatacccccattatataattgtgacttgtcaccgtgaccctttgggccttgactattgagagttggatctgactactaatatgagtaactaaaatgttggaatgaattgtgcacgtgtagaaacaattaagttttttgctagtatgtaattggtttttgggttgactgatgttgagacttctataagatgtagctcacaagacatttaaagtgaagctcagatgacatttaaattcacctgaaatggcataatagatccatctatttatgcacgtttctatttattaattgcctaatatactacttatgttatttgtataatgaatgcttgtgatattcctgccttggtctaaattgcttttgaggtagtagttatataattgttattctgttactttgcagtgtggtgccttgccaatacaacttgctgcaagctatggaagaagaaaggatgtggaattactgtttcccttaacttgccccattcgagctgtgtcaaactggactgttgaaggaattcttgcccatgccaaatcaaagcatgccagatcaaaatgttcaaagcccaaggtgtgaatgtgaataattcattgtgattgctctgtatttccttatgtatctgtcaattttttatagcataaaaaatttgcactgacatgctgggttacatgagtttattgacaatcttcttttCtctagttcatactatttacttccaaagaaacacaacagttttccagctgagtttgtaccaacaaacttctaacatagtgctgtttattttactgtttagagcaggaaacatatatagttgttgagaagcaatatcaagtagttgaaaaatctacttgtttatttttatatcaatataaaatgttaaacaactttgttgagaaaaattataggagggtgattattctattgttgcaattaggaacttaacccatgctttgaggcacctaccccctacacgagggcctgcccttcataggtcgattcttaacacatatttttacgaggggccagcgagtttaactagagctgaaattcgctcctgtggggagtcaaacgtaagacctagaggttttacttgagtactataaccgctaggccctttcacttggattggtttatgttgcacctatgtactaattagtaccattattttccaacaatgcgagtgggatatcagataagagattgtatcacccttgtgcggtgttctgttctgaaacatacaagaatgcaggtcattgtttcagtttgcaccttatattgtggtttcatttttaaatcaaaatccaatatattttaaaaatgcctatgacttttgttgctatataaaaTTGtttcatcgaaatatttttatcttcaaaagaTtttggacatttggtatcggtatatgcctaaattggtttttcttcgtgatgtaggacaagcaggatgatcataataaaaaggctcagttcaaactacgtggtgagaaagctattaaggacaagcatgatgagcaggataaaaaggctcagctcaaactacagggtgagaaagctgttaagagaaaggactaccatggcgcctcaattttctacactgaggtacgatgacatgagcaagccacatttttttccatgaaagaaaatccgatttgttggcttggatatatcttctttgcaacatatatggaattatggatagacatagaaaaatactctctctagtaaagaatatgtcatttgactttttccagttgatcaagaaattataaaatacttagtttcaaaacataaaattggtatgtttgtatttgttttgaaaagaagtttcataatatcattaacttttaagattttatgatcttattcaaagttgtacctctgcttgtgagtgcatttattatgaaaCataaatacataaatatataagtatattttcgactgaatggagtagcctctgcttgtgagtgtatttattataagcctatcttattataggtctgtctaaaattatttcacacatttattatgaTtttgtattactatagcatgcctaattatttagccaaacagcacagtgattgtgagtgcatttattgttggaaacaattcatgcaagcttcagcaaaccttttagaacaatgtccagaatgtttcgagaagtgtactcatgtttctgttcaaaactatcacgggcatgaatatacccctgtcatcattgatagacatgggaaccggtgttttctgtaatgtggactgttgctatcttccagcgcatcaaaaataggatgttgtctgccttttatgatacgatagaagttctgcctattttctcaaacaaacttcgctctcttgggtaattgagcatcttgatcctgtgttttgatgcaggcaattgagctggatcctactgatgcaacattgtattccaataggagcctttgccatctttaaatgaccgaagctttgtttgatgctgattattgcataaaatcgcggcctgaatggttaaaaggttactacaggaaaggggctgctctcatgttgctgaaggtcagataaaatctttgtttcttcaccttgcactattttttttcttgtcacttcctttgtgtaatctCcccaattttttattcataggagtatgaaaaggcatgtgacgcattcttggctggactgaagttggatccttcgaatgctgagatggagaaagtattccggtattctgtcttaaaccgagttccatttctatcatgttggacagtttattgaataagattgaacatgtttgtgtattatgctctcgattcaactaattactttataatggtgtatgcatttgaaatatctctcaagctgcacctttttttccgtttagtctaaacacgtggaaccaagttgaacttgtggctaacttgatttcacacttgcagggaggcggtcgaggcgatgaagaagcatcatgttactacaaaaagcttcaagccatcaggttagataagtttaccagcactggctttggctgcacgttttgtgtaatatatttattgtccagaaaacggccgtgatgctcttgagctagagcactaa More
CDS seq		atggtggaggagctcggcttcgacatcaatgtcggcagagagctggggcatgatgaagtagaacgactgttgctatctagaggagctagcgttgatatagcttattttcatgggacaccactacatattgctgctgcatatgggaaggccagcgtcatgaaagttttattggagcacgatgcagatccaaacaaggtttcagaagagttaggtacaccgttggttgcaactcttcatgctacttctcaaggattagctgaatctgtttcactgaagtgtaaaactactcgtcgaggtaacttgaatcccctttatgtgatcaatctatttgcaggtgctgacgttaacttcagtgatcgtgacactccgttggtggtagcaattactaatggcttgactaactgcattaaatacttgctaaaggctggtgcagaccctaatatcccaacttgtcattgtggtgccttgccaatacaacttgctgcaagctatggaagaagaaaggatgtggaattactgtttcccttaacttgccccattcgagctgtgtcaaactggactgttgaaggaattcttgcccatgccaaatcaaagcatgccagatcaaaatgttcaaagcccaaggacaagcaggatgatcataataaaaaggctcagttcaaactacgtggtgagaaagctattaaggacaagcatgatgagcaggataaaaaggctcagctcaaactacagggtgagaaagctgttaagagaaaggactaccatggcgcctcaattttctacactgaggcaattgagctggatcctactgatgcaacattgtattccaataggagcctttgccatctttaa More
Protein seq		MVEELGFDINVGRELGHDEVERLLLSRGASVDIAYFHGTPLHIAAAYGKASVMKVLLEHDADPNKVSEELGTPLVATLHATSQGLAESVSLKCKTTRRGNLNPLYVINLFAGADVNFSDRDTPLVVAITNGLTNCIKYLLKAGADPNIPTCHCGALPIQLAASYGRRKDVELLFPLTCPIRAVSNWTVEGILAHAKSKHARSKCSKPKDKQDDHNKKAQFKLRGEKAIKDKHDEQDKKAQLKLQGEKAVKRKDYHGASIFYTEAIELDPTDATLYSNRSLCHL
Function		Ankyrin repeat and SOCS box protein 3 [UniProtKB/Swiss-Prot:Q9WV72]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsPr106_03g0029690	OsPr106_03g0029690.01	Chr03	29194241	29199007	+	NAM
CDS seq	atggtggaggagctcggcttcgacatcaatgtcggcagagagctggggcatgatgaagtagaacgactgttgctatctagaggagctagcgttgatatagcttattttcatgggacaccactacatattgctgctgcatatgggaaggccagcgtcatgaaagttttattggagcacgatgcagatccaaacaaggtttcagaagagttaggtacaccgttggttgcaactcttcatgctacttctcaaggattagctgaatctgtttcactgaagtgtaaaactactcgtcgaggtaacttgaatcccctttatgtgatcaatctatttgcaggtgctgacgttaacttcagtgatcgtgacactccgttggtggtagcaattactaatggcttgactaactgcattaaatacttgctaaaggctggtgcagaccctaatatcccaacttgtcattgtggtgccttgccaatacaacttgctgcaagctatggaagaagaaaggatgtggaattactgtttcccttaacttgccccattcgagctgtgtcaaactggactgttgaaggaattcttgcccatgccaaatcaaagcatgccagatcaaaatgttcaaagcccaaggacaagcaggatgatcataataaaaaggctcagttcaaactacgtggtgagaaagctattaaggacaagcatgatgagcaggataaaaaggctcagctcaaactacagggtgagaaagctgttaagagaaaggactaccatggcgcctcaattttctacactgaggcaattgagctggatcctactgatgcaacattgtattccaataggagcctttgccatctttaa More
Protein seq	MVEELGFDINVGRELGHDEVERLLLSRGASVDIAYFHGTPLHIAAAYGKASVMKVLLEHDADPNKVSEELGTPLVATLHATSQGLAESVSLKCKTTRRGNLNPLYVINLFAGADVNFSDRDTPLVVAITNGLTNCIKYLLKAGADPNIPTCHCGALPIQLAASYGRRKDVELLFPLTCPIRAVSNWTVEGILAHAKSKHARSKCSKPKDKQDDHNKKAQFKLRGEKAIKDKHDEQDKKAQLKLQGEKAVKRKDYHGASIFYTEAIELDPTDATLYSNRSLCHL More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsPr106_03g0029690	OsPr106_03g0029690.02	Chr03	29199008	29199643	+	NAM
CDS seq	atgaccgaagctttgtttgatgctgattattgcataaaatcgcggcctgaatggttaaaaggttactacaggaaaggggctgctctcatgttgctgaaggagtatgaaaaggcatgtgacgcattcttggctggactgaagttggatccttcgaatgctgagatggagaaagtattccgggaggcggtcgaggcgatgaagaagcatcatgttactacaaaaagcttcaagccatcagaaaacggccgtgatgctcttgagctagagcactaa More
Protein seq	MTEALFDADYCIKSRPEWLKGYYRKGAALMLLKEYEKACDAFLAGLKLDPSNAEMEKVFREAVEAMKKHHVTTKSFKPSENGRDALELEH

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.000000	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_03g0680600	SBH	0.0	0.0	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os03g47720	RBH	0.0	0.0	0.000000
Nipponbare \| IRGSP 1.0 \| RAP-db	Os03g0680600	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_03g0030090	RBH	0.0	0.0	0.399815
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_03g0029820	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_03g0029880	RBH	0.0	0.0	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_03g0029950	SBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_03G0467600	RBH	0.055224	0.030247	0.7244175
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_03g0029400	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_03G0468700	RBH	0.012549	0	2.1404165
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_03g0029720	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_03g0029790	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_03g0029750	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_03g0029570	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_03g0029530	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_03G029540	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_03g0029480	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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