Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_03g0022800 | OGI:03051640 | 4/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr03:20200189-20201502 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaTCtCTTGTCCCTCATCCCAGTTCCCCAACCCTGGGCAGGTGCATTATCATTCTGCTGCTGCAGGTTACCAAATTGCCAGGCAGGAGCATCCTCAAGATTAATATTGGGATCAACAGGACATTCACCAGGTGGAATATCATCATCAGGTGGAAGCACATCTGCAAACTCACCATTCATAGTGTAAACATATATTGTCCAAGATTGACCATTGGGCACATTAGGCTGCTCCCAAACAACAAACTGAGGAACAGAGTCCAAGTCCCTATACCAAACTCTAGCCAGCACTCTTCCTTTAAGAGGAGgatcatcatcaaaccaccaatcaagttccccaaaagtagagataacctgattcacattatgaaaggtgatgtagtccatgggaaaatcaagcaacataatccaacccctgtgattgtacggagcattacgccaattgggaccttgatcatgcctaacaaaccggacttgatgaacaccatcataatctagaggaagacccaaaacaagagcatcccgatgcaaaggcgaactaatctgaaacaGggcaaccacattcggatgtggataagActccaaaacctcaacatgcctgacttgctccaaaaaacctctaatttcattgcgatggtcatcccactgatcaacaggcaactgtggatgaaccaaggcaagaacaaactgctcatggcgcatggtagaaggagtgaagtttaccgtatcaactcggcggcgacgatgagggccagctggatgcaagtgcaatccctgagggtctggctgaagattcgccattgaagtgaccaagatcgtctCcgggtgagaggattttcctgcagcgtcaagcgaaggaagacgaggagactgaggagccgattttttaacccaacatttccgaaccctaagggttttctgtttaatgccaccacgggccttgaggccaatattaggtcggcccatctttgcatgatcagaaacttttgagcccaggaacgcagatttaggatcatagctcaaatttgaatccgaaaaaagccttaacttcggatcaagatgaacagaaggtttcttagcggcggaaggttccttagcggcggaaagtttcttagcggcggaggtcgccgacttaggatcattagaacgaagaacatgaaaccgattgaaaacacgcgcaataggaacattggccttaacagaggtggatttaccctttcggctaacaacaatccattccttactctgttctagctcccaactcctaagctcaaattcccaattagggctaccattacgCcagaggaagaatctcat
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| CDS seq | atgagattcttcctctgGcgtaatggtagccctaattgggaatttgagcttaggagttgggagctagaacagagtaaggaatggattgttgttagccgaaagggtaaatccacctctgttaaggccaatgttcctattgcgcgtgttttcaatcggtttcatgttcttcgttctaatgatcctaagtcggcgacctccgccgctaagaaactttccgccgctaaggaaccttccgccgctaagaaaccttctgttcatcttgatccgaagttaaggcttttttcggattcaaatttgagctatgatcctaaatctgcgttcctgggctcaaaagtttctgatcatgcaaagatgggccgacctaatattggcctcaaggcccgtggtggcattaaacagaaaacccttagggttcggaaatgttgggttaaaaaatcggctcctcagtctcctcgtcttccttcgcttgacgctgcaggaaaatcctctcacccgGagacgatcttggtcacttcaatggcgaatcttcagccagaccctcagggattgcacttgcatccagctggccctcatcgtcgccgccgagttgatacggtaaacttcactccttctaccatgcgccatgagcagtttgttcttgccttggttcatccacagttgcctgttgatcagtgggatgaccatcgcaatgaaattagaggttttttggagcaagtcaggcatgttgaggttttggagTcttatccacatccgaatgtggttgccCtGGACTTGGACTCTGTTCCTCAGTTTGTTGTTTGGGAGCAGCCTAATGTGCCCAATGGTCAATCTTGGACAATATATGTTTACACTATGAATGGTGAGTTTGCAGATGTGCTTCCACCTGATGATGATATTCCACCTGGTGAATGTCCTGTTGATCCCAATATTAATCTTGAGGATGCTCCTGCCTGGCAATTTGGTAACCTGCAGCAGCAGAATGATAATGCACCTGCCCAGGGTTGGGGAACTGGGATGAGGGACAAGaGAtaa
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| Protein seq | MRFFLWRNGSPNWEFELRSWELEQSKEWIVVSRKGKSTSVKANVPIARVFNRFHVLRSNDPKSATSAAKKLSAAKEPSAAKKPSVHLDPKLRLFSDSNLSYDPKSAFLGSKVSDHAKMGRPNIGLKARGGIKQKTLRVRKCWVKKSAPQSPRLPSLDAAGKSSHPETILVTSMANLQPDPQGLHLHPAGPHRRRRVDTVNFTPSTMRHEQFVLALVHPQLPVDQWDDHRNEIRGFLEQVRHVEVLESYPHPNVVALDLDSVPQFVVWEQPNVPNGQSWTIYVYTMNGEFADVLPPDDDIPPGECPVDPNINLEDAPAWQFGNLQQQNDNAPAQGWGTGMRDKR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_03g0022800 | OsPr106_03g0022800.01 | Chr03 | 20200189 | 20201502 | - | NAM | ||
| CDS seq | atgagattcttcctctgGcgtaatggtagccctaattgggaatttgagcttaggagttgggagctagaacagagtaaggaatggattgttgttagccgaaagggtaaatccacctctgttaaggccaatgttcctattgcgcgtgttttcaatcggtttcatgttcttcgttctaatgatcctaagtcggcgacctccgccgctaagaaactttccgccgctaaggaaccttccgccgctaagaaaccttctgttcatcttgatccgaagttaaggcttttttcggattcaaatttgagctatgatcctaaatctgcgttcctgggctcaaaagtttctgatcatgcaaagatgggccgacctaatattggcctcaaggcccgtggtggcattaaacagaaaacccttagggttcggaaatgttgggttaaaaaatcggctcctcagtctcctcgtcttccttcgcttgacgctgcaggaaaatcctctcacccgGagacgatcttggtcacttcaatggcgaatcttcagccagaccctcagggattgcacttgcatccagctggccctcatcgtcgccgccgagttgatacggtaaacttcactccttctaccatgcgccatgagcagtttgttcttgccttggttcatccacagttgcctgttgatcagtgggatgaccatcgcaatgaaattagaggttttttggagcaagtcaggcatgttgaggttttggagTcttatccacatccgaatgtggttgccCtGGACTTGGACTCTGTTCCTCAGTTTGTTGTTTGGGAGCAGCCTAATGTGCCCAATGGTCAATCTTGGACAATATATGTTTACACTATGAATGGTGAGTTTGCAGATGTGCTTCCACCTGATGATGATATTCCACCTGGTGAATGTCCTGTTGATCCCAATATTAATCTTGAGGATGCTCCTGCCTGGCAATTTGGTAACCTGCAGCAGCAGAATGATAATGCACCTGCCCAGGGTTGGGGAACTGGGATGAGGGACAAGaGAtaa
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| Protein seq | MRFFLWRNGSPNWEFELRSWELEQSKEWIVVSRKGKSTSVKANVPIARVFNRFHVLRSNDPKSATSAAKKLSAAKEPSAAKKPSVHLDPKLRLFSDSNLSYDPKSAFLGSKVSDHAKMGRPNIGLKARGGIKQKTLRVRKCWVKKSAPQSPRLPSLDAAGKSSHPETILVTSMANLQPDPQGLHLHPAGPHRRRRVDTVNFTPSTMRHEQFVLALVHPQLPVDQWDDHRNEIRGFLEQVRHVEVLESYPHPNVVALDLDSVPQFVVWEQPNVPNGQSWTIYVYTMNGEFADVLPPDDDIPPGECPVDPNINLEDAPAWQFGNLQQQNDNAPAQGWGTGMRDKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024980 | SBH | 0.255960 | 0.076444 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0315200 | RBH | 0 | 0.0111705 | 0.087837 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0316600 | RBH | 0.019123 | 0.0894425 | 0.8487715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024790 | SBH | 0.612962 | 5.274023 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
