Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_03g0015820 | OGI:03031790 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr03:12167535-12169837 | ||||||||
| Gene Symbol | DLN85, OsDLN85, OsDLN85a, OsDLN85b, DLN85a, DLN85b | ||||||||||
| DNA seq | acatgagtagccatagttagttagagcagctaaaggccatctgactcccaaagaatagaactgcaacgtaccatgaactacccctgattaccagaaacagagggctgataaaacatcaccaggcggttcctcacaggggggttgtgcagtctacaagcaaattgtacatgagaggaattgaaagaggtatgagttatgtgtttatgtgttgcaagtaagtttggtttgttcaaacatagaaaaagagatatcttgtcatagatcctaacatgagatatattcttgccagatgtatcatcatcaacaacagctccaaagccacaaccaactcttgccatctaggcagagtttcccttcagaacggcacttgcttatgcaaggaggaagtgtttcaggggaatcagggcttgttctctcaactgatgcaaagcctaggttaaaatggacccctgagctacatgagcgatttgtggaggcagtaaatcaacttggtggtccagaaagtgagcattcgattaaacctttctgccataagagcaagcacataaaaatcatcaTCtaaacacttcaatcttgcagaagctaccccaaaaacaatcatgaggctcatgggcgtccctggattaacactgtatcatctcaagagtcatcttcaggtatacatggaacttagtatcacagttctttcatctctttgttttaatgggacaccactcggtttcttttcattttacatgccttcaagcaatatactgattgttttttctcttttgcactagaaatacagactaagcaaaaatctccacgctcaagccaatgcgggaaatgtgaaaaatggtaaatttcagttctcaaatgatcagcttaccataaagctcaatactgaacttcctttccattttgtcagcgctagtctgcaccacagCAAcagagaaaccatctgaagcaaatggatcaccagttagtcacctaaaccttggaacccagacaaacaagtaagagacaagtgtacttttgctcaagcgcgttcgcagaaggttaacacccttttgtatttctatcagatctgtgcacataggtgaagcccttcaaatgcaaattgaagttcagagacgggtacatgagcaactagaggtacaaaaacagcacgagtttataacataaatttatatttattgtaataaacacttttgacatccctttgaattcattgaaatattacattttggttgaaaaattaatgcaaagaggcgcacataatataggttggattttatgattaaatatccaataaatacaaagagctaacaatggcttttgaacaggtacagagacacctgcaactccgaattgaagcacaaggaaagtatctacaatcggtgctggaaaaggcacaggagacacttgcaaagcagaatgcaggttcggttggtcttgaaactgcaaagatggaactgtcagaattggtctccaaagtatcaaccgaatgcctccagcatgctttttcaggctttgagattgaaagttcacaaatgctacaagggcacaccatgcatctcggtgatggatcggttgacagctgtttaactgcatgtgatggttcccagaaggatcaagatatcctatcaattagcctttcagcccaaaaaggaaaagagattggttgcatgtcatttgatatgcatgtgaaagaaagaggaagtgaggatttgtttctcgacaagctaaacagaaggccttcaaatcatccagaaaggtgtgagaggagaggtggctttagtatgtcatgccagacagcaaacttggatctgaacatgaacgacacttatgacgggcctaaacactgcaagaaatttgatttaaacgggttcagctgggcctaggaaatgagcactaacaattgccatgtcctttagcactatcagtgagaacaagtgaaaacagattttttcttccgatgatcaatggtattgccatgccttcgattgaaagatcaacgccacttcacaatttgaccatctctgctgttataaaatggtaattcactgaaataagtgatggaattagcgataagatgcttcttgtgcaccacacaagttaccaatttggccatgtagatcccattcccggagtcggtagcatttgagaacttggcactctccattattctgccttaccgtgattgtagtttgtaccatagaaatataacaaattttgttaaaaattccatttgagctaatgattactagttactactgtcaattggccgtgccattgaactgatcttttgctctctttgttcc
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| CDS seq | atgtatcatcatcaacaacagctccaaagccacaaccaactcttgccatctaggcagagtttcccttcagaacggcacttgcttatgcaaggaggaagtgtttcaggggaatcagggcttgttctctcaactgatgcaaagcctaggttaaaatggacccctgagctacatgagcgatttgtggaggcagtaaatcaacttggtggtccagaaacgctagtctgcaccacagCAAcagagaaaccatctgaagcaaatggatcaccagttagtcacctaaaccttggaacccagacaaacaaatctgtgcacataggtgaagcccttcaaatgcaaattgaagttcagagacgggtacatgagcaactagaggtacagagacacctgcaactccgaattgaagcacaaggaaagtatctacaatcggtgctggaaaaggcacaggagacacttgcaaagcagaatgcaggttcggttggtcttgaaactgcaaagatggaactgtcagaattggtctccaaagtatcaaccgaatgcctccagcatgctttttcaggctttgagattgaaagttcacaaatgctacaagggcacaccatgcatctcggtgatggatcggttgacagctgtttaactgcatgtgatggttcccagaaggatcaagatatcctatcaattagcctttcagcccaaaaaggaaaagagattggttgcatgtcatttgatatgcatgtgaaagaaagaggaagtgaggatttgtttctcgacaagctaaacagaaggccttcaaatcatccagaaaggtgtgagaggagaggtggctttagtatgtcatgccagacagcaaacttggatctgaacatgaacgacacttatgacgggcctaaacactgcaagaaatttgatttaaacgggttcagctgggcctag
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| Protein seq | MYHHQQQLQSHNQLLPSRQSFPSERHLLMQGGSVSGESGLVLSTDAKPRLKWTPELHERFVEAVNQLGGPETLVCTTATEKPSEANGSPVSHLNLGTQTNKSVHIGEALQMQIEVQRRVHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLAKQNAGSVGLETAKMELSELVSKVSTECLQHAFSGFEIESSQMLQGHTMHLGDGSVDSCLTACDGSQKDQDILSISLSAQKGKEIGCMSFDMHVKERGSEDLFLDKLNRRPSNHPERCERRGGFSMSCQTANLDLNMNDTYDGPKHCKKFDLNGFSWA |
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| Function | Myb-related protein 2 [UniProtKB/Swiss-Prot:Q9SQQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_03g0015820 | OsPr106_03g0015820.01 | Chr03 | 12167541 | 12169837 | + | NAM | ||
| CDS seq | atgtatcatcatcaacaacagctccaaagccacaaccaactcttgccatctaggcagagtttcccttcagaacggcacttgcttatgcaaggaggaagtgtttcaggggaatcagggcttgttctctcaactgatgcaaagcctaggttaaaatggacccctgagctacatgagcgatttgtggaggcagtaaatcaacttggtggtccagaaacgctagtctgcaccacagCAAcagagaaaccatctgaagcaaatggatcaccagttagtcacctaaaccttggaacccagacaaacaaatctgtgcacataggtgaagcccttcaaatgcaaattgaagttcagagacgggtacatgagcaactagaggtacagagacacctgcaactccgaattgaagcacaaggaaagtatctacaatcggtgctggaaaaggcacaggagacacttgcaaagcagaatgcaggttcggttggtcttgaaactgcaaagatggaactgtcagaattggtctccaaagtatcaaccgaatgcctccagcatgctttttcaggctttgagattgaaagttcacaaatgctacaagggcacaccatgcatctcggtgatggatcggttgacagctgtttaactgcatgtgatggttcccagaaggatcaagatatcctatcaattagcctttcagcccaaaaaggaaaagagattggttgcatgtcatttgatatgcatgtgaaagaaagaggaagtgaggatttgtttctcgacaagctaaacagaaggccttcaaatcatccagaaaggtgtgagaggagaggtggctttagtatgtcatgccagacagcaaacttggatctgaacatgaacgacacttatgacgggcctaaacactgcaagaaatttgatttaaacgggttcagctgggcctag
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| Protein seq | MYHHQQQLQSHNQLLPSRQSFPSERHLLMQGGSVSGESGLVLSTDAKPRLKWTPELHERFVEAVNQLGGPETLVCTTATEKPSEANGSPVSHLNLGTQTNKSVHIGEALQMQIEVQRRVHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLAKQNAGSVGLETAKMELSELVSKVSTECLQHAFSGFEIESSQMLQGHTMHLGDGSVDSCLTACDGSQKDQDILSISLSAQKGKEIGCMSFDMHVKERGSEDLFLDKLNRRPSNHPERCERRGGFSMSCQTANLDLNMNDTYDGPKHCKKFDLNGFSWA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_03g0015820 | OsPr106_03g0015820.02 | Chr03 | 12167535 | 12169815 | + | IsoSeq | ||
| CDS seq | atgcaggttcggttggtcttgaaactgcaaagatggaactgtcagaattggtctccaaagtatcaaccgaatgcctccagcatgctttttcaggctttgagattgaaagttcacaaatgctacaagggcacaccatgcatctcggtgatggatcggttgacagct |
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| Protein seq | MQVRLVLKLQRWNCQNWSPKYQPNASSMLFQALRLKVHKCYKGTPCISVMDRLTA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 11.927920 | 4.132636 | 15.253930 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0325500 | RBH | 3.592712 | 7.256366 | 2.119022 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g20900 | RBH | 2.104901 | 2.560866 | 0.276105 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0325500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016160 | RBH | 1.559988 | 11.186162 | 3.670522 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016000 | RBH | 0.751831 | 1.046961 | 1.169826 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016020 | RBH | 2.495392 | 11.121840 | 4.870854 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016010 | RBH | 0.327485 | 0.289496 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0028030 | RBH | 2.323400 | 0.000000 | 5.005016 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0197200 | RBH | 12.273699 | 42.926634 | 1.831911 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0015700 | RBH | 0.726175 | 0.893569 | 1.609322 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0201300 | RBH | 12.4875365 | 18.350837 | 5.2938435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0015960 | RBH | 0.372043 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0015970 | RBH | 1.182419 | 11.169178 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016000 | RBH | 5.802290 | 15.552325 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0015880 | RBH | 2.684809 | 2.196326 | 2.024620 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0015820 | RBH | 1.068716 | 7.532969 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G015770 | RBH | 1.546989 | 1.354722 | 3.165333 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0015670 | RBH | 4.273053 | 30.582579 | 7.415687 |
