Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_02g0034230 | OGI:02090760 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr02:34256652-34258877 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactccaaccggttaatcttttgaaccattttaaaaaagatagatgcaatacatggtatacccacagagaaatactgtcaaccaggaccactttctacaaaaaaaatagagagcatcaattattccaagtgatcatttaatttaacagtacgttattacagtttttgacaatacaccaggaggggcagaagcagcactccatttatgcgccgaattctcgtacagacacacacacacacacacacacagattcacacagtcaattcagtccttgagatgagaataccatcagtatcggcgtagagccactccccgtcgcaaatcctggtccctgcaatggtcacaggcacatgcttctccccgatgcccttcttgtttgctttcatagggtgcgagttcagagctcggacaccaatgtcgcagccattgatctcatccacgtccctgatgcaaccattgacgacgatgccagcccacccattgttctgcgcctgctgcacagggttgccacccaaaatggcgcaccgcaggctcccaccaccatcgaccacgagaaccctgccttggcccttctcctccaggaactcgcgaacaagaacattgtcctcgtagaccttcagcgtcacgatagggccggcgaaaacctgccgccttccgtagacttggaagacgggctggagagcacgaagctcgccattcatgatcaaatgtgcatttgcatcacatacttcggctgtggctaatggcaaggcagccatattggattcggttctgctgtcattagaggaggggaaacattattgagcaagaagtggcttaagaagtaaggctgctcaataaatattcagcaatataagttttatactattaggcactaacaacaaaaacattttaaggaagcacacattgtacttgtaatacagcaaatgaggaatgctttaactgtaaccctgtttttcatgcgtgatctcaacgatgtactctaaacagaggaaaaatgttgagactccattcaacaaacaatgggagattctccatgactaaactttataaggagcgcaactagagaacTtttttcctttttatcaacgcaaggaacaaaatgttaagaaactcagctgtccatcttccacagaacacctaaaccgccaaaccaatcttgttgagaaatgctaacatgcttttaactgaacaaaaaaactaaaagcaaaagtaagtttaagaatgtgatctaacatgcaatttccatagcggtcatcttatatcatctatcacacacacacacacacacaaactatgtcatacaataagtaatcaaggtgtatcaagttacaaatgctctaagcagcaagcgcagaaaaaaaaaaagagcagctaatccagccagctatggaacaaaagataaactcagtatcataattgccatttcccctgtaataaaagcacttaacaaggagggataaaggtttgctgttgacaggtccaaccataccgacaacgcaacatgagacgataccatattggtaaggctataagatgatcaatattaaatctggttttctttattcgatactaaatctgatttggtttatcgcttagcacgacatggcactccaatagcataccaacaaatcaagaaccaccctatgttttatttccatccagtaagtataaaaatgccacaaatcaattagaacatgccaaagcaaggaacaaacaacagggaacggaacacgcggactcctgaacttccaccgatcacgcagaacgattaggcgaacgggcacggctaggacagcaggaacaggaagagggcggagcgagcggcaagaacgatttccttacctcgctcgcggccgcgggagagggttgcgcggggtcggatcggcggcgatctggccgggccaatcgggtgagggatccgattgggggtggtggttggctcgatctggatcactggttgggatggtatttgtgaagatggggaggagcggagcaggggaggtagccggcggcggagggcaccgaataacccaccacccgctgcgtccgcgtgggcgtgggcgtgggcgtgcgcgtgcgcaacacgtgattccaggcagcagcgtcagcgtgagcgtctcctcatgcccgcggcgtcgtgcgaatgtcggggaagaatcctctgagctttttgcgcataggcccctgcatttccctcgtatctcgcagcttccaaattccat
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| CDS seq | atggctgccttgccattagccacagccgaagtatgtgatgcaaatgcacatttgatcatgaatggcgagcttcgtgctctccagcccgtcttccaagtctacggaaggcggcaggttttcgccggccctatcgtgacgctgaaggtctacgaggacaatgttcttgttcgcgagttcctggaggagaagggccaaggcagggttctcgtggtcgatggtggtgggagcctgcggtgcgccattttgggtggcaaccctgtgcagcaggcgcagaacaatgggtgggctggcatcgtcgtcaatggttgcatcagggacgtggatgagatcaatggctgcgacattggtgtccgagctctgaactcgcaccctatgaaagcaaacaagaagggcatcggggagaagcatattaaccggttggagtga
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| Protein seq | MAALPLATAEVCDANAHLIMNGELRALQPVFQVYGRRQVFAGPIVTLKVYEDNVLVREFLEEKGQGRVLVVDGGGSLRCAILGGNPVQQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALNSHPMKANKKGIGEKHINRLE |
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| Function | Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 [UniProtKB/Swiss-Prot:Q9M8R9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0034230 | OsPr106_02g0034230.01 | Chr02 | 34256652 | 34258877 | - | NAM | ||
| CDS seq | atggctgccttgccattagccacagccgaagtatgtgatgcaaatgcacatttgatcatgaatggcgagcttcgtgctctccagcccgtcttccaagtctacggaaggcggcaggttttcgccggccctatcgtgacgctgaaggtctacgaggacaatgttcttgttcgcgagttcctggaggagaagggccaaggcagggttctcgtggtcgatggtggtgggagcctgcggtgcgccattttgggtggcaaccctgtgcagcaggcgcagaacaatgggtgggctggcatcgtcgtcaatggttgcatcagggacgtggatgagatcaatggctgcgacattggtgtccgagctctgaactcgcaccctatgaaagcaaacaagaagggcatcggggagaagcatattaaccggttggagtga
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| Protein seq | MAALPLATAEVCDANAHLIMNGELRALQPVFQVYGRRQVFAGPIVTLKVYEDNVLVREFLEEKGQGRVLVVDGGGSLRCAILGGNPVQQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALNSHPMKANKKGIGEKHINRLE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0034230 | OsPr106_02g0034230.02 | Chr02 | 34256726 | 34257125 | - | IsoSeq | ||
| CDS seq | ctggcatcgtcgtcaatggttgcatcagggacgtggatgagatcaatggctgcgacattggtgtccgag |
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| Protein seq | LASSSMVASGTWMRSMAATLVSE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.004232 | 38.610737 | 21.826639 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0761900 | RBH | 4.846031 | 5.608240 | 20.764362 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g52430 | RBH | 2.789509 | 3.190611 | 4.573567 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0761900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0034610 | RBH | 2.600784 | 57.274563 | 8.709567 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0034710 | RBH | 0.418729 | 10.700191 | 6.077903 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0034580 | RBH | 4.443933 | 46.958378 | 13.077217 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0034170 | RBH | 0.390007 | 1.123385 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030850 | SBH | 10.645543 | 20.742016 | 13.743395 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0524900 | RBH | 12.022865 | 38.0722565 | 4.917168 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0034050 | RBH | 0.525577 | 1.974816 | 3.104736 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0555000 | RBH | 21.989134 | 18.0455955 | 7.923763 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0034310 | RBH | 1.122505 | 0.158078 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0034140 | RBH | 2.539085 | 26.175514 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0034420 | RBH | 14.051419 | 40.265472 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0034340 | RBH | 1.928449 | 1.552180 | 3.660678 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0033930 | RBH | 0.511996 | 13.739008 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G034620 | RBH | 1.314647 | 12.551661 | 1.485996 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0034340 | RBH | 0.845172 | 31.619864 | 9.325480 |
