Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_02g0030860 | OGI:02083470 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr02:31782674-31786802 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacccaaccgtcggccccagtcacaatCccccctttcccctcctccgccgactcgcccaccttttcccccttccaaaatcccaccgccgattcgctcccactcgccaaccctctccaatcccaaggtcggagagggggacagcgaagctagcccacccgcaccaccgatcctcgaagggattccagccgatcgctgcgtagctcgccggatggcgcagcagcagcagcagcaggggtcggggtcggggtcggcgtcggcgtcgagctccagctcggggctgcacctgctggcgtcgccgttcggggacaccacctacaccaaggtgttcgtgggcgggctcgcgtgggagaccaccagcgagaggctccgccgcttctacgaccgcttcggggagatcctcgaggccgtcgtcatcaccgaccgccactctggccgctccaagggctacggcttcgtcagtgcccttcgatttttcgccgctgttgatcctgctttttccgggcgtttgtttgtttgttcgtggaattgctggctgtaaacagtggttggcttatacaagtgtcatgttgaccttgtgcaggtgacgttccgcgatcctgagtcggcgaggaaggcatgcgaggacccgacgccggtgatcgacggcaggcgtgccaattgtaacctggcgtcgcttggccgcgctcagcctgcagttcctctcggtattgatctccctgccttgacactgatttgcactaacttattcgagtagattatgagcacattttgataccaccgtgaggatttgcttgctagcaagttactgcagtggtatctgtggtatgattgtgttgccttctgcaaacttatttgatcggttctacattgtgtttgctctagaatttagttacccgcactcgtcctcctagaataagacaactatggaaagaagaaaaattgataatcaagtgaacatgggtacagtcaactatataccttctcaagtgggtttgggacttaaaataacaccacaggtgagctaaaatgatactgagcattcatttgaacagaagtactgatgatgttggtgtttggcatgtgcttgttttgttttgcaaacaaaaaactacaaattacagtatgccacccctaatggtgatacgatgactactaatataccattttggtaccttaaacagttcttggaagtgctcatgcggtgataatagttctatttctgtatgcatttgttctgaatacatgtacaatcttttcagggaggccaagatcagctgggtcctactttggcgttccagttccaaggggtgtttatgtagggggttatggtcagcaccggacacttcctcttgggtattaccaaggattcccggttcctcaatacaggtatgatgtgttaacttttccaatgcagcttcctgctcttagatggcccatttgtgacaatcttcaagtagttcttacttaggcgtccacatttggcatataatcttgtggcaattactttgtgtagattgtgcatagcctgcatcctattttttttcttctcctcttcgaaaattgccaaataaatatgttcattttcttcgtggaacataatatcgctgttttggaagtcaataaagtgtgttcggtcattcattttcctccttttgcagctacactacatatgggacagaatacatctatccacaggttgaagtgtgaaaaatattacgtttaattttccttgcgcaacataagggttttacaaagcatcgactgattctgatgagagatctctttgtagggtacattaaacccatacgttggtcagcaatatgttccaatttatggagtttcatccgcagcaaatactgctagccaaccatttagccagttcagcccgtccatttctggtgggggtaatggttatgtggctattcatggttacaatgtgccaggaaatccatttgtacagttaactggatcaaactttagcagtgcatcgcctacacctcggcccaccattcaggccccctttttagttggtaatgtggtcttctttgcctattttttttagtatttagtgattcctcttgtctttccagaaaacacaatactgtgttatgctatatgttctcacaccaaatttaccaggctaacatggatgctatcgttcattcgtcaccctgcatctttttatagtgtctgcttaagtgttctccttttgtgaataacttcatattacttggcctttgtagcagcaccggttcctactcacccgcacttggtcctcccaactcactcacctcagtttacacaggctagtggttcagaccaaagagcaagctgaactatgctgccaaacatttgtaccttgaggtttgttctgtctggactgctgttatcttttcttgtgattatctggtagtaactgttctttttctgtccctaataggtacccttagattgcagcaggacaaaagagcagtgctgctgtatttgtagtactggttcttacctggcaagtaatcccccttgcattcataaggtaccaattatgctgtactgagaagccatgcttacattcatagaatgccaatcttactcttatgggaaattagtccatcaatattctgcccttcagaagttcagatgcatttagtttcagaacaaaatgatggagttacctattggttctaacttgtcagaactcaaaagggacaaactttgatgttaatatgcttgtgttttgtctcttattctcattgttgtactccttaatctcgttatgttttttaggatctcctatcatgctccaatagtattgcattcgatactgggtgatgctttcccataatcaacttgaaaccaaaccaggaaattcattcttaacgttgatgttagattagttttgcatctaacagaagataagtacattgatggcatcatggcgttcatcattactctgaacatacagactaaacagccaactgaatcttaatcaatctgtttgcttgtgatatgatatggtcgacactaaatagcaaaaatttcccagagaaattctttctgtttgcttcaggctttctttgtttcttgtttcaaaacattgggaaatggtttatacgtgtttgtctgaagttattgtaagccaattggatcatgtgcccgcacgtgtatactaatgtgatcatgcatcttgttttttatcatatacaagttttcattttattgacctgagttctatttctgtaattttgattattatgataatcttcgctatgaaatttctgcaggttgtccttatcatggtcatcagatgtacctggaatcatgatgttgccccgatggatgggacaatgatccaagagcaacggttgctcttgtcagttttgcttggttacatcctatgtctcaatgggactgcgaccattgctgcagcttgaagctctagatacagcattattgatcctgtatctgacagctcattagcccatggagatatactggatgctggaatggagtccagcactctgtaagatgactaatccccttggattagtcatgatgcactcatatgattgttcacctaaactcctgaagaatcatcaagctactatgtggttgattatatcccagtgttgaagtctggcacaagtccaacaaatgtagcccgtcccgtcagtcttgtgtctgtctatggtcatcgtcgtgatctatgcttgatcggcctttggaggtataaatagttattgcgtccgcttcactcatcatgtccaaaatgttggaccaagatgatccttcctcctgtatctgtaacccaagtgtctaccggaactgctcagggtcgttactcgttaccaactggtagcgaggtcacgaggactatcttctatggtgttactcgtatcggtatcagaactgttgttatgtgttttaatttttcattgctatgtgctcagcagttcctcgacttccgagaacggcactttgttgtccgaccaaaataaatcagttcggatgagaaacccatgctttggggtcttatcggtattgtgtaagcctggatcgttaaaacttgtactatttgtacaaattgttttgctgttttgcagtgatgtgtattatgtgaaattgtttcag
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| CDS seq | atggcgcagcagcagcagcagcaggggtcggggtcggggtcggcgtcggcgtcgagctccagctcggggctgcacctgctggcgtcgccgttcggggacaccacctacaccaaggtgttcgtgggcgggctcgcgtgggagaccaccagcgagaggctccgccgcttctacgaccgcttcggggagatcctcgaggccgtcgtcatcaccgaccgccactctggccgctccaagggctacggcttcgtgacgttccgcgatcctgagtcggcgaggaaggcatgcgaggacccgacgccggtgatcgacggcaggcgtgccaattgtaacctggcgtcgcttggccgcgctcagcctgcagttcctctcgggaggccaagatcagctgggtcctactttggcgttccagttccaaggggtgtttatgtagggggttatggtcagcaccggacacttcctcttgggtattaccaaggattcccggttcctcaatacagctacactacatatgggacagaatacatctatccacagggtacattaaacccatacgttggtcagcaatatgttccaatttatggagtttcatccgcagcaaatactgctagccaaccatttagccagttcagcccgtccatttctggtgggggtaatggttatgtggctattcatggttacaatgtgccaggaaatccatttgtacagttaactggatcaaactttagcagtgcatcgcctacacctcggcccaccattcaggccccctttttagttgcaccggttcctactcacccgcacttggtcctcccaactcactcacctcagtttacacaggctagtggttcagaccaaagagcaagctga
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| Protein seq | MAQQQQQQGSGSGSASASSSSSGLHLLASPFGDTTYTKVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVTFRDPESARKACEDPTPVIDGRRANCNLASLGRAQPAVPLGRPRSAGSYFGVPVPRGVYVGGYGQHRTLPLGYYQGFPVPQYSYTTYGTEYIYPQGTLNPYVGQQYVPIYGVSSAANTASQPFSQFSPSISGGGNGYVAIHGYNVPGNPFVQLTGSNFSSASPTPRPTIQAPFLVAPVPTHPHLVLPTHSPQFTQASGSDQRAS |
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| Function | Probable RNA-binding protein ARP1 [UniProtKB/Swiss-Prot:Q9M1S3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0030860 | OsPr106_02g0030860.03 | Chr02 | 31782674 | 31784534 | + | NAM | ||
| CDS seq | atggcgcagcagcagcagcagcaggggtcggggtcggggtcggcgtcggcgtcgagctccagctcggggctgcacctgctggcgtcgccgttcggggacaccacctacaccaaggtgttcgtgggcgggctcgcgtgggagaccaccagcgagaggctccgccgcttctacgaccgcttcggggagatcctcgaggccgtcgtcatcaccgaccgccactctggccgctccaagggctacggcttcgtgacgttccgcgatcctgagtcggcgaggaaggcatgcgaggacccgacgccggtgatcgacggcaggcgtgccaattgtaacctggcgtcgcttggccgcgctcagcctgcagttcctctcgggaggccaagatcagctgggtcctactttggcgttccagttccaaggggtgtttatgtagggggttatggtcagcaccggacacttcctcttgggtattaccaaggattcccggttcctcaatacagctacactacatatgggacagaatacatctatccacaggttgaagtgtga
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| Protein seq | MAQQQQQQGSGSGSASASSSSSGLHLLASPFGDTTYTKVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVTFRDPESARKACEDPTPVIDGRRANCNLASLGRAQPAVPLGRPRSAGSYFGVPVPRGVYVGGYGQHRTLPLGYYQGFPVPQYSYTTYGTEYIYPQVEV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0030860 | OsPr106_02g0030860.02 | Chr02 | 31782674 | 31784534 | + | NAM | ||
| CDS seq | atggcgcagcagcagcagcagcaggggtcggggtcggggtcggcgtcggcgtcgagctccagctcggggctgcacctgctggcgtcgccgttcggggacaccacctacaccaaggtgttcgtgggcgggctcgcgtgggagaccaccagcgagaggctccgccgcttctacgaccgcttcggggagatcctcgaggccgtcgtcatcaccgaccgccactctggccgctccaagggctacggcttcgtcagtgcccttcgatttttcgccgctgtgacgttccgcgatcctgagtcggcgaggaaggcatgcgaggacccgacgccggtgatcgacggcaggcgtgccaattgtaacctggcgtcgcttggccgcgctcagcctgcagttcctctcgggaggccaagatcagctgggtcctactttggcgttccagttccaaggggtgtttatgtagggggttatggtcagcaccggacacttcctcttgggtattaccaaggattcccggttcctcaatacagctacactacatatgggacagaatacatctatccacaggttgaagtgtga
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| Protein seq | MAQQQQQQGSGSGSASASSSSSGLHLLASPFGDTTYTKVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVSALRFFAAVTFRDPESARKACEDPTPVIDGRRANCNLASLGRAQPAVPLGRPRSAGSYFGVPVPRGVYVGGYGQHRTLPLGYYQGFPVPQYSYTTYGTEYIYPQVEV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0030860 | OsPr106_02g0030860.01 | Chr02 | 31782674 | 31786802 | + | NAM | ||
| CDS seq | atggcgcagcagcagcagcagcaggggtcggggtcggggtcggcgtcggcgtcgagctccagctcggggctgcacctgctggcgtcgccgttcggggacaccacctacaccaaggtgttcgtgggcgggctcgcgtgggagaccaccagcgagaggctccgccgcttctacgaccgcttcggggagatcctcgaggccgtcgtcatcaccgaccgccactctggccgctccaagggctacggcttcgtgacgttccgcgatcctgagtcggcgaggaaggcatgcgaggacccgacgccggtgatcgacggcaggcgtgccaattgtaacctggcgtcgcttggccgcgctcagcctgcagttcctctcgggaggccaagatcagctgggtcctactttggcgttccagttccaaggggtgtttatgtagggggttatggtcagcaccggacacttcctcttgggtattaccaaggattcccggttcctcaatacagctacactacatatgggacagaatacatctatccacagggtacattaaacccatacgttggtcagcaatatgttccaatttatggagtttcatccgcagcaaatactgctagccaaccatttagccagttcagcccgtccatttctggtgggggtaatggttatgtggctattcatggttacaatgtgccaggaaatccatttgtacagttaactggatcaaactttagcagtgcatcgcctacacctcggcccaccattcaggccccctttttagttgcaccggttcctactcacccgcacttggtcctcccaactcactcacctcagtttacacaggctagtggttcagaccaaagagcaagctga
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| Protein seq | MAQQQQQQGSGSGSASASSSSSGLHLLASPFGDTTYTKVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVTFRDPESARKACEDPTPVIDGRRANCNLASLGRAQPAVPLGRPRSAGSYFGVPVPRGVYVGGYGQHRTLPLGYYQGFPVPQYSYTTYGTEYIYPQGTLNPYVGQQYVPIYGVSSAANTASQPFSQFSPSISGGGNGYVAIHGYNVPGNPFVQLTGSNFSSASPTPRPTIQAPFLVAPVPTHPHLVLPTHSPQFTQASGSDQRAS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0030860 | OsPr106_02g0030860.04 | Chr02 | 31782778 | 31786790 | + | IsoSeq | ||
| CDS seq | atggagatatactggatgctggaatggagtccagcactctgtaagatgactaatccccttggattagtcatgatgcactcatatgattgttcacctaaactcctgaagaatcatcaagctactatgtggttgattatatcccag |
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| Protein seq | MEIYWMLEWSPALCKMTNPLGLVMMHSYDCSPKLLKNHQATMWLIISQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 31784704 | 31784921 | + | OsPr106_02g0030860.04 | OsPr106_02g0030860.04,OsPr106_02g0030860.01 | All |
| A5 | Chr02 | 31783128 | 31783255 | + | OsPr106_02g0030860.02 | OsPr106_02g0030860.04,OsPr106_02g0030860.02,OsPr106_02g0030860.03,OsPr106_02g0030860.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.886688 | 9.308311 | 9.762928 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0714000 | RBH | 3.704246 | 3.950086 | 7.824247 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g48340 | RBH | 1.153259 | 1.028087 | 0.952993 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0714000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0031140 | RBH | 0.203801 | 19.150635 | 4.760122 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031250 | RBH | 0.252397 | 1.848776 | 2.637146 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0031120 | RBH | 1.149020 | 10.128348 | 8.381860 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0030710 | RBH | 0.212965 | 0.105589 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0481800 | RBH | 4.6537925 | 18.0430785 | 19.8347815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0030620 | RBH | 0.130322 | 0.697002 | 1.258749 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0510100 | RBH | 7.30053 | 23.1646445 | 10.8224845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0030910 | RBH | 0.154510 | 0.211105 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0030690 | RBH | 0.473191 | 10.067240 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0031060 | RBH | 2.484945 | 3.795448 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030890 | RBH | 0.638884 | 0.401548 | 0.900217 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030490 | RBH | 0.464859 | 4.111370 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G031170 | RBH | 0.438954 | 3.635344 | 3.038327 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030930 | RBH | 1.229194 | 14.888131 | 3.933150 |
