Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_02g0028600 | OGI:02078100 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr02:29798046-29798666 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggttgatgaggagcaacattttgaccaggcaagtttgccacaatatcgtcattggtttcaacagtatgggatgtacactgttttttggatgctcggtccgctcaaggtttgcgggatcccatcccttatccactggataacttcgattggaccggttacatgcccagtggtccacctctctcccgattggtatactaacatttctttacttgttcttttttacttgcaataattcacttaataacacttcttttttcttaaaatgctaatttaggctctacgttctatcaaacaagttacgtggggaattaaatgtgctatgagcagaggatggagaaagatgggcaagattcttatctgtacatgttacaataacgtccaggatatcaatatggaggctaagttaagcagcatgctaagcgagtcaggtctacctttatgtgtagatgacattcgatctgatgatagtgcatcaccattttctacccctaaaccaattaaacctgaggagataaacatggatgtgatggatgactggttgtactcaaacaggggatttacaagataccttagtttaggtacatattctgatgtgctggaatctcaggataaacattga
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| CDS seq | atggttgatgaggagcaacattttgaccaggcaagtttgccacaatatcgtcattggtttcaacagtatgggatgtacactgttttttggatgctcggtccgctcaaggtttgcgggatcccatcccttatccactggataacttcgattggaccggctctacgttctatcaaacaagttacgtggggaattaaatgtgctatgagcagaggatggagaaagatgggcaagattcttatctgtacatgttacaataacgtccaggatatcaatatggaggctaagttaagcagcatgctaagcgagtcaggtctacctttatgtgtagatgacattcgatctgatgatagtgcatcaccattttctacccctaaaccaattaaacctgaggagataaacatggatgtgatggatgactggttgtactcaaacaggggatttacaagataccttagtttaggtacatattctgatgtgctggaatctcaggataaacattga
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| Protein seq | MVDEEQHFDQASLPQYRHWFQQYGMYTVFWMLGPLKVCGIPSLIHWITSIGPALRSIKQVTWGIKCAMSRGWRKMGKILICTCYNNVQDINMEAKLSSMLSESGLPLCVDDIRSDDSASPFSTPKPIKPEEINMDVMDDWLYSNRGFTRYLSLGTYSDVLESQDKH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0028600 | OsPr106_02g0028600.01 | Chr02 | 29798046 | 29798666 | + | NAM | ||
| CDS seq | atggttgatgaggagcaacattttgaccaggcaagtttgccacaatatcgtcattggtttcaacagtatgggatgtacactgttttttggatgctcggtccgctcaaggtttgcgggatcccatcccttatccactggataacttcgattggaccggctctacgttctatcaaacaagttacgtggggaattaaatgtgctatgagcagaggatggagaaagatgggcaagattcttatctgtacatgttacaataacgtccaggatatcaatatggaggctaagttaagcagcatgctaagcgagtcaggtctacctttatgtgtagatgacattcgatctgatgatagtgcatcaccattttctacccctaaaccaattaaacctgaggagataaacatggatgtgatggatgactggttgtactcaaacaggggatttacaagataccttagtttaggtacatattctgatgtgctggaatctcaggataaacattga
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| Protein seq | MVDEEQHFDQASLPQYRHWFQQYGMYTVFWMLGPLKVCGIPSLIHWITSIGPALRSIKQVTWGIKCAMSRGWRKMGKILICTCYNNVQDINMEAKLSSMLSESGLPLCVDDIRSDDSASPFSTPKPIKPEEINMDVMDDWLYSNRGFTRYLSLGTYSDVLESQDKH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029340 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029400 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029270 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028860 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020610 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0456300 | RBH | 0.029055 | 0.285431 | 0.0048155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028400 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0484100 | SBH | 1.1391665 | 6.6148175 | 3.4884885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028750 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028740 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029070 | SBH | 0.000000 | 0.178822 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029080 | SBH | 0.0 | 0.0 | 0.0 |
